Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGACAATATTTCTTTTTGTAAAGATCCGTGGCATGATTGTGGTATTCTCTTTTGTGATTTTCCTCGTTTGTTTCGTCTCTTTTGTACTCTTAATATTTCTGTTGTTGAAGCACGGCTTCTGATTTTGAGACTTGGAACTTGCACTTTAGACGTAATTTTACTAATCATGAAATTCATGAATGGGTATCTTTGTATGCTATTTTTGTCTTCTAGCAGATTTCGTATGGTGTCTGATTCTTGGAGTTGGACTATTGACTCCTCATCTATGTTTACTATGAAATCTATGATTGATGACTTGACAGGTGTTCTTGAGCCTTTTGAAAGGGATTTTTATTCAATCATTTGGATGGATCACTTCCCGAAGAAAATCAAAATTTTTCTTTGGGAGCTTAGTCATGAAGCTATAAACACTACTGATCATCTTCAACATTGTATGCCTTATATGTCTCTTTCCCTTTCTTGGTGTATTATGTGTTGTGCTAATGCTAAATCCCATGCTCATCTTTTTATTCATTGTCCTTTTGCTCGACAATTTTGGGATCACATTTTGGAGGCTTTTGGTTGGTCTACTGCTTTGTCCAATGACATTTTAGACATCTTCAACTCTCTTATGGTGGGCCACCCGTTTATTGGTTGCAGTAAGGTTATTTGGTTCACCGTTCTTTGGGATTTCTTTTGGACTTTTTGGGGCGAGCTTAATAGACGTCCTTTTCATCTTTTAGTTCTTTTTTGA
mRNA sequence
ATGGGTGACAATATTTCTTTTTGTAAAGATCCGTGGCATGATTGTGGTATTCTCTTTTGTGATTTTCCTCGTTTGTTTCGTCTCTTTTGTACTCTTAATATTTCTGTTGTTGAAGCACGGCTTCTGATTTTGAGACTTGGAACTTGCACTTTAGACGTAATTTTACTAATCATGAAATTCATGAATGGGTATCTTTGTATGCTATTTTTGTCTTCTAGCAGATTTCGTATGGTGTCTGATTCTTGGAGTTGGACTATTGACTCCTCATCTATGTTTACTATGAAATCTATGATTGATGACTTGACAGGTGTTCTTGAGCCTTTTGAAAGGGATTTTTATTCAATCATTTGGATGGATCACTTCCCGAAGAAAATCAAAATTTTTCTTTGGGAGCTTAGTCATGAAGCTATAAACACTACTGATCATCTTCAACATTGTATGCCTTATATGTCTCTTTCCCTTTCTTGGTGTATTATGTGTTGTGCTAATGCTAAATCCCATGCTCATCTTTTTATTCATTGTCCTTTTGCTCGACAATTTTGGGATCACATTTTGGAGGCTTTTGGTTGGTCTACTGCTTTGTCCAATGACATTTTAGACATCTTCAACTCTCTTATGGTGGGCCACCCGTTTATTGGTTGCAGTAAGGTTATTTGGTTCACCGTTCTTTGGGATTTCTTTTGGACTTTTTGGGGCGAGCTTAATAGACGTCCTTTTCATCTTTTAGTTCTTTTTTGA
Coding sequence (CDS)
ATGGGTGACAATATTTCTTTTTGTAAAGATCCGTGGCATGATTGTGGTATTCTCTTTTGTGATTTTCCTCGTTTGTTTCGTCTCTTTTGTACTCTTAATATTTCTGTTGTTGAAGCACGGCTTCTGATTTTGAGACTTGGAACTTGCACTTTAGACGTAATTTTACTAATCATGAAATTCATGAATGGGTATCTTTGTATGCTATTTTTGTCTTCTAGCAGATTTCGTATGGTGTCTGATTCTTGGAGTTGGACTATTGACTCCTCATCTATGTTTACTATGAAATCTATGATTGATGACTTGACAGGTGTTCTTGAGCCTTTTGAAAGGGATTTTTATTCAATCATTTGGATGGATCACTTCCCGAAGAAAATCAAAATTTTTCTTTGGGAGCTTAGTCATGAAGCTATAAACACTACTGATCATCTTCAACATTGTATGCCTTATATGTCTCTTTCCCTTTCTTGGTGTATTATGTGTTGTGCTAATGCTAAATCCCATGCTCATCTTTTTATTCATTGTCCTTTTGCTCGACAATTTTGGGATCACATTTTGGAGGCTTTTGGTTGGTCTACTGCTTTGTCCAATGACATTTTAGACATCTTCAACTCTCTTATGGTGGGCCACCCGTTTATTGGTTGCAGTAAGGTTATTTGGTTCACCGTTCTTTGGGATTTCTTTTGGACTTTTTGGGGCGAGCTTAATAGACGTCCTTTTCATCTTTTAGTTCTTTTTTGA
Protein sequence
MGDNISFCKDPWHDCGILFCDFPRLFRLFCTLNISVVEARLLILRLGTCTLDVILLIMKFMNGYLCMLFLSSSRFRMVSDSWSWTIDSSSMFTMKSMIDDLTGVLEPFERDFYSIIWMDHFPKKIKIFLWELSHEAINTTDHLQHCMPYMSLSLSWCIMCCANAKSHAHLFIHCPFARQFWDHILEAFGWSTALSNDILDIFNSLMVGHPFIGCSKVIWFTVLWDFFWTFWGELNRRPFHLLVLF*
Homology
BLAST of CsGy6G020075 vs. NCBI nr
Match:
CAN73452.1 (hypothetical protein VITISV_028992 [Vitis vinifera])
HSP 1 Score: 104 bits (260), Expect = 1.18e-22
Identity = 59/175 (33.71%), Postives = 85/175 (48.57%), Query Frame = 0
Query: 70 LSSSRFR-MVSDSWSWTIDSSSMFTMKSMIDDLTGVLEPFERDFYSIIWMDHFPKKIKIF 129
LSS RF +++S +W++ SS +F++KS L+ V P +W P K+K
Sbjct: 80 LSSVRFSPSLANSRAWSLSSSGLFSVKSFFLALSKVSNPILFLPAKFLWSSKVPSKVKAL 139
Query: 130 LWELSHEAINTTDHLQHCMPYMSLSLSWCIMCCANAKSHAHLFIHCPFARQFWDHILEAF 189
W ++H +NT D LQ PY SL WCI+C N +S HLF+HCP W+ + +
Sbjct: 140 AWIVAHGKVNTNDKLQLRRPYKSLCPQWCILCKGNGESIDHLFLHCPVTIGLWNKLFKLA 199
Query: 190 GWSTALSNDILDIFNSLMVGHPFIGCS---KVIWFTVLWDFFWTFWGELNRRPFH 240
G LS D+ L++ +G S K +W F W W E N R F
Sbjct: 200 GLVWVLSRSFEDM---LVIAFKGLGNSLRGKTLWQVACLTFVWIVWQERNNRIFE 251
BLAST of CsGy6G020075 vs. NCBI nr
Match:
RVX19652.1 (hypothetical protein CK203_005129 [Vitis vinifera])
HSP 1 Score: 105 bits (261), Expect = 1.87e-22
Identity = 73/248 (29.44%), Postives = 107/248 (43.15%), Query Frame = 0
Query: 2 GDNISFCKDPWHDCGILFCDFPRLFRLFCTLNISVVEARLLILRLG-------TCTLDVI 61
G+ F +D W L F L+R+ N++V L L T I
Sbjct: 72 GERTRFWEDLWWGNQTLCSQFADLYRVISVKNLTVSNVLGNSLPLSWNFNFRRNLTDSEI 131
Query: 62 LLIMKFMNGYLCMLFLSSSRFRMVSDSWSWTIDSSSMFTMKSMIDDLTGVLEPFERDFYS 121
L+ + M+ +LF SS SDS +W++ SS +F++KS L+ V P
Sbjct: 132 DLLQRLMSSLNSVLFSPSS-----SDSRAWSLSSSGLFSVKSFFCALSKVSNPLMFLPAK 191
Query: 122 IIWMDHFPKKIKIFLWELSHEAINTTDHLQHCMPYMSLSLSWCIMCCANAKSHAHLFIHC 181
+W P K+K W ++H +NT D LQ PY +LS WCI+C N +S HLF+HC
Sbjct: 192 FLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKALSPQWCILCKGNGESIDHLFLHC 251
Query: 182 PFARQFWDHILEAFG--WSTALSNDILDIFNSLMVGHPFIGCSKVIWFTVLWDFFWTFWG 240
P W + G W S + + + + +G+ G K +W W W
Sbjct: 252 PVTIGLWHRLFNLVGLIWVPPRSLEDMLVISFKGLGNSLRG--KTLWQIACLTLIWMVWQ 311
BLAST of CsGy6G020075 vs. NCBI nr
Match:
RVW81108.1 (hypothetical protein CK203_044712 [Vitis vinifera])
HSP 1 Score: 101 bits (251), Expect = 2.20e-22
Identity = 57/175 (32.57%), Postives = 84/175 (48.00%), Query Frame = 0
Query: 70 LSSSRFR-MVSDSWSWTIDSSSMFTMKSMIDDLTGVLEPFERDFYSIIWMDHFPKKIKIF 129
LSS RF ++DS +W++ SS +FT+K L+ V P +W P K+K
Sbjct: 4 LSSVRFSPSLADSRAWSLSSSGLFTVKFFFLALSKVSNPILFLPAKFLWSSKVPSKVKAL 63
Query: 130 LWELSHEAINTTDHLQHCMPYMSLSLSWCIMCCANAKSHAHLFIHCPFARQFWDHILEAF 189
W ++H +NT D LQ PY SL WCI+C N +S HLF+HCP W+ + +
Sbjct: 64 AWIVAHGKVNTNDKLQLRRPYKSLCPQWCILCKGNGESIDHLFLHCPVTIGLWNKLFKMA 123
Query: 190 G--WSTALSNDILDIFNSLMVGHPFIGCSKVIWFTVLWDFFWTFWGELNRRPFHL 241
G W S + + + +G+ G K +W W W E N+R F +
Sbjct: 124 GLDWVPPRSFEDMLVIAFKGLGNSLRG--KTLWQVACLTLVWIVWQERNKRIFRI 176
BLAST of CsGy6G020075 vs. NCBI nr
Match:
CAN70431.1 (hypothetical protein VITISV_030910 [Vitis vinifera])
HSP 1 Score: 104 bits (260), Expect = 1.86e-21
Identity = 75/250 (30.00%), Postives = 112/250 (44.80%), Query Frame = 0
Query: 2 GDNISFCKDPWHDCGILFCDFPRLFRLFCTLNISVVE--------ARLLILRLGTCTLDV 61
G+ I F +D W L F L+R+ N++V A L R ++
Sbjct: 592 GERIRFXEDLWWGNQSLCSQFADLYRVISVKNLTVSNVLGNSFPLAWNLNFRRNLTDSEI 651
Query: 62 ILLIMKFMNGYLCMLFLSSSRFR-MVSDSWSWTIDSSSMFTMKSMIDDLTGVLEPFERDF 121
LL + M+ LSS RF ++DS +W++ SS +FT+KS L+ V P
Sbjct: 652 DLL-QRLMSS------LSSVRFSPSLADSRAWSLSSSGLFTVKSFFLALSKVSNPILFLP 711
Query: 122 YSIIWMDHFPKKIKIFLWELSHEAINTTDHLQHCMPYMSLSLSWCIMCCANAKSHAHLFI 181
+W P K+K W ++H +NT D LQ PY +L WCI+C AN +S HLF+
Sbjct: 712 AKFLWSSKVPSKVKALAWIVAHGKVNTNDKLQLRRPYKALCPQWCILCKANGESIDHLFL 771
Query: 182 HCPFARQFWDHILEAFG--WSTALSNDILDIFNSLMVGHPFIGCSKVIWFTVLWDFFWTF 240
HCP W+ + + G W S + + + +G+ G K +W W
Sbjct: 772 HCPVTIGLWNKLFKMAGLDWVPPRSFEDMLVIAFKGLGNSLRG--KTLWQVACLTLVWIV 831
BLAST of CsGy6G020075 vs. NCBI nr
Match:
RVW85366.1 (hypothetical protein CK203_045564 [Vitis vinifera])
HSP 1 Score: 100 bits (248), Expect = 1.98e-21
Identity = 53/164 (32.32%), Postives = 76/164 (46.34%), Query Frame = 0
Query: 79 SDSWSWTIDSSSMFTMKSMIDDLTGVLEPFERDFYSIIWMDHFPKKIKIFLWELSHEAIN 138
SDS +W++ SSS F++KS L+ V P +W P K+K W ++H +N
Sbjct: 29 SDSRAWSLSSSSSFSVKSFFYALSKVSNPLMFLPAKFLWSSKVPSKVKALAWLVAHGKVN 88
Query: 139 TTDHLQHCMPYMSLSLSWCIMCCANAKSHAHLFIHCPFARQFWDHILEAFG--WSTALSN 198
T D LQ PY +L WCI+C N +S HLF+HCP W + G W S
Sbjct: 89 TNDKLQLRRPYKALCPQWCILCKGNGESIDHLFLHCPVTIGLWHRLFNLVGVIWVPPRSL 148
Query: 199 DILDIFNSLMVGHPFIGCSKVIWFTVLWDFFWTFWGELNRRPFH 240
+ + + + +G+ G K +W W W E N R F
Sbjct: 149 EDMLVISFKGLGNSLRG--KTLWQIACLTLIWMVWQERNNRIFE 190
BLAST of CsGy6G020075 vs. ExPASy TrEMBL
Match:
A0A0A0KIZ8 (DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=Csa_6G400300 PE=3 SV=1)
HSP 1 Score: 208 bits (530), Expect = 7.61e-58
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0
Query: 1 MGDNISFCKDPWHDCGILFCDFPRLFRLFCTLNISVVEARLLILRLGTCTLDVILLIMKF 60
MGDNISFCKDPWHDCGILFCDFPRLFRLFCTLNISVVEARLLILRLGTCTLDVILLIMKF
Sbjct: 32 MGDNISFCKDPWHDCGILFCDFPRLFRLFCTLNISVVEARLLILRLGTCTLDVILLIMKF 91
Query: 61 MNGYLCMLFLSSSRFRMVSDSWSWTIDSSSMFTMKSMIDDLT 102
MNGYLCMLFLSSSRFRMVSDSWSWTIDSSSMFTMKSMIDDLT
Sbjct: 92 MNGYLCMLFLSSSRFRMVSDSWSWTIDSSSMFTMKSMIDDLT 133
BLAST of CsGy6G020075 vs. ExPASy TrEMBL
Match:
A5AIV6 (zf-RVT domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_028992 PE=4 SV=1)
HSP 1 Score: 104 bits (260), Expect = 5.73e-23
Identity = 59/175 (33.71%), Postives = 85/175 (48.57%), Query Frame = 0
Query: 70 LSSSRFR-MVSDSWSWTIDSSSMFTMKSMIDDLTGVLEPFERDFYSIIWMDHFPKKIKIF 129
LSS RF +++S +W++ SS +F++KS L+ V P +W P K+K
Sbjct: 80 LSSVRFSPSLANSRAWSLSSSGLFSVKSFFLALSKVSNPILFLPAKFLWSSKVPSKVKAL 139
Query: 130 LWELSHEAINTTDHLQHCMPYMSLSLSWCIMCCANAKSHAHLFIHCPFARQFWDHILEAF 189
W ++H +NT D LQ PY SL WCI+C N +S HLF+HCP W+ + +
Sbjct: 140 AWIVAHGKVNTNDKLQLRRPYKSLCPQWCILCKGNGESIDHLFLHCPVTIGLWNKLFKLA 199
Query: 190 GWSTALSNDILDIFNSLMVGHPFIGCS---KVIWFTVLWDFFWTFWGELNRRPFH 240
G LS D+ L++ +G S K +W F W W E N R F
Sbjct: 200 GLVWVLSRSFEDM---LVIAFKGLGNSLRGKTLWQVACLTFVWIVWQERNNRIFE 251
BLAST of CsGy6G020075 vs. ExPASy TrEMBL
Match:
A0A438KEN2 (zf-RVT domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_005129 PE=4 SV=1)
HSP 1 Score: 105 bits (261), Expect = 9.06e-23
Identity = 73/248 (29.44%), Postives = 107/248 (43.15%), Query Frame = 0
Query: 2 GDNISFCKDPWHDCGILFCDFPRLFRLFCTLNISVVEARLLILRLG-------TCTLDVI 61
G+ F +D W L F L+R+ N++V L L T I
Sbjct: 72 GERTRFWEDLWWGNQTLCSQFADLYRVISVKNLTVSNVLGNSLPLSWNFNFRRNLTDSEI 131
Query: 62 LLIMKFMNGYLCMLFLSSSRFRMVSDSWSWTIDSSSMFTMKSMIDDLTGVLEPFERDFYS 121
L+ + M+ +LF SS SDS +W++ SS +F++KS L+ V P
Sbjct: 132 DLLQRLMSSLNSVLFSPSS-----SDSRAWSLSSSGLFSVKSFFCALSKVSNPLMFLPAK 191
Query: 122 IIWMDHFPKKIKIFLWELSHEAINTTDHLQHCMPYMSLSLSWCIMCCANAKSHAHLFIHC 181
+W P K+K W ++H +NT D LQ PY +LS WCI+C N +S HLF+HC
Sbjct: 192 FLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKALSPQWCILCKGNGESIDHLFLHC 251
Query: 182 PFARQFWDHILEAFG--WSTALSNDILDIFNSLMVGHPFIGCSKVIWFTVLWDFFWTFWG 240
P W + G W S + + + + +G+ G K +W W W
Sbjct: 252 PVTIGLWHRLFNLVGLIWVPPRSLEDMLVISFKGLGNSLRG--KTLWQIACLTLIWMVWQ 311
BLAST of CsGy6G020075 vs. ExPASy TrEMBL
Match:
A0A438H996 (zf-RVT domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_044712 PE=4 SV=1)
HSP 1 Score: 101 bits (251), Expect = 1.07e-22
Identity = 57/175 (32.57%), Postives = 84/175 (48.00%), Query Frame = 0
Query: 70 LSSSRFR-MVSDSWSWTIDSSSMFTMKSMIDDLTGVLEPFERDFYSIIWMDHFPKKIKIF 129
LSS RF ++DS +W++ SS +FT+K L+ V P +W P K+K
Sbjct: 4 LSSVRFSPSLADSRAWSLSSSGLFTVKFFFLALSKVSNPILFLPAKFLWSSKVPSKVKAL 63
Query: 130 LWELSHEAINTTDHLQHCMPYMSLSLSWCIMCCANAKSHAHLFIHCPFARQFWDHILEAF 189
W ++H +NT D LQ PY SL WCI+C N +S HLF+HCP W+ + +
Sbjct: 64 AWIVAHGKVNTNDKLQLRRPYKSLCPQWCILCKGNGESIDHLFLHCPVTIGLWNKLFKMA 123
Query: 190 G--WSTALSNDILDIFNSLMVGHPFIGCSKVIWFTVLWDFFWTFWGELNRRPFHL 241
G W S + + + +G+ G K +W W W E N+R F +
Sbjct: 124 GLDWVPPRSFEDMLVIAFKGLGNSLRG--KTLWQVACLTLVWIVWQERNKRIFRI 176
BLAST of CsGy6G020075 vs. ExPASy TrEMBL
Match:
A5BQI4 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_030910 PE=4 SV=1)
HSP 1 Score: 104 bits (260), Expect = 8.99e-22
Identity = 75/250 (30.00%), Postives = 112/250 (44.80%), Query Frame = 0
Query: 2 GDNISFCKDPWHDCGILFCDFPRLFRLFCTLNISVVE--------ARLLILRLGTCTLDV 61
G+ I F +D W L F L+R+ N++V A L R ++
Sbjct: 592 GERIRFXEDLWWGNQSLCSQFADLYRVISVKNLTVSNVLGNSFPLAWNLNFRRNLTDSEI 651
Query: 62 ILLIMKFMNGYLCMLFLSSSRFR-MVSDSWSWTIDSSSMFTMKSMIDDLTGVLEPFERDF 121
LL + M+ LSS RF ++DS +W++ SS +FT+KS L+ V P
Sbjct: 652 DLL-QRLMSS------LSSVRFSPSLADSRAWSLSSSGLFTVKSFFLALSKVSNPILFLP 711
Query: 122 YSIIWMDHFPKKIKIFLWELSHEAINTTDHLQHCMPYMSLSLSWCIMCCANAKSHAHLFI 181
+W P K+K W ++H +NT D LQ PY +L WCI+C AN +S HLF+
Sbjct: 712 AKFLWSSKVPSKVKALAWIVAHGKVNTNDKLQLRRPYKALCPQWCILCKANGESIDHLFL 771
Query: 182 HCPFARQFWDHILEAFG--WSTALSNDILDIFNSLMVGHPFIGCSKVIWFTVLWDFFWTF 240
HCP W+ + + G W S + + + +G+ G K +W W
Sbjct: 772 HCPVTIGLWNKLFKMAGLDWVPPRSFEDMLVIAFKGLGNSLRG--KTLWQVACLTLVWIV 831
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
CAN73452.1 | 1.18e-22 | 33.71 | hypothetical protein VITISV_028992 [Vitis vinifera] | [more] |
RVX19652.1 | 1.87e-22 | 29.44 | hypothetical protein CK203_005129 [Vitis vinifera] | [more] |
RVW81108.1 | 2.20e-22 | 32.57 | hypothetical protein CK203_044712 [Vitis vinifera] | [more] |
CAN70431.1 | 1.86e-21 | 30.00 | hypothetical protein VITISV_030910 [Vitis vinifera] | [more] |
RVW85366.1 | 1.98e-21 | 32.32 | hypothetical protein CK203_045564 [Vitis vinifera] | [more] |
Match Name | E-value | Identity | Description | |
A0A0A0KIZ8 | 7.61e-58 | 100.00 | DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=Csa_6G400... | [more] |
A5AIV6 | 5.73e-23 | 33.71 | zf-RVT domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_028992 PE=... | [more] |
A0A438KEN2 | 9.06e-23 | 29.44 | zf-RVT domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_005129 PE=4... | [more] |
A0A438H996 | 1.07e-22 | 32.57 | zf-RVT domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_044712 PE=4... | [more] |
A5BQI4 | 8.99e-22 | 30.00 | Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI... | [more] |
Match Name | E-value | Identity | Description | |