CsGy6G019780 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G019780
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Formin-like protein 4 isoform X2
Location	Gy14Chr6: 20375379 .. 20376220 (-)
RNA-Seq Expression	CsGy6G019780
Synteny	CsGy6G019780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCAAATACTAAGGCTCGAGCTACTCTTCCATTCACTCACAGGGGTTACACTACGACATTTTTATTCCATAAGAAGACAAAGGTATGTATGTCATTTTTATATTATAATAGATATTGTGCATCCTATAACTTTGATCATAACATGCAGGAATCAGAAGATGGTAAGAAGTTGAATGATATGGAGTTTTTTCAACTCACTCATTCTAGTGCTAAGAAAGGATGGGTGGTCGAGGCAGAAGAGAAATATGTAACCAAAATTTGGTGTTTATTTGTAATTTCCTTCCTTTTTTTTTTACAATATATCAATACATTATGTCATTATTATATGGGATGAAATAATGGCACTAAAAACTGATTCACAAGAAACGGGAGAATCTATTGAAGATAGAGAGATTGTGACCGAATGTTGGGTAAGCGGTCGGGTCATGCGAAGGGTCTTGGTTGGGGACAAAAACCAAAACATGCTAGGAATGGAGCAAGGTACAATCACACTAAAGAAACATAGGTTCAAGTTGCACACTTGCAAAGTATAGTTGAATCACAACAAATCATCATTGAAGAGATCCTACGAAGGCTAGCAACTCAAGAAGCTACCTCTAACATAGAAAGAAGTTCAGAACAATAGTTAACAGGTAATGTTTATTGGAAGTTCTTCTTACAACTCTAGTTTGTTGAAGTTAGTGGACTTGATTAGTTTGTGTTGAAGTGCTATGATTATCCCACGACTATGGTAATCTATTTTTTAAATTTTATTTTATATGTGCTTCAATGATCATTTGTTCCTAAGTGTGTTTTGATTAGGATGTGGCTAACTTATTAGCTCTATCTCTTGTTTAA

mRNA sequence

ATGGAAGCAAATACTAAGGCTCGAGCTACTCTTCCATTCACTCACAGGGGTTACACTACGACATTTTTATTCCATAAGAAGACAAAGGAATCAGAAGATGGTAAGAAGTTGAATGATATGGAGTTTTTTCAACTCACTCATTCTAGTGCTAAGAAAGGATGGGTGGTCGAGGCAGAAGAGAAATATGATGTGGCTAACTTATTAGCTCTATCTCTTGTTTAA

Coding sequence (CDS)

ATGGAAGCAAATACTAAGGCTCGAGCTACTCTTCCATTCACTCACAGGGGTTACACTACGACATTTTTATTCCATAAGAAGACAAAGGAATCAGAAGATGGTAAGAAGTTGAATGATATGGAGTTTTTTCAACTCACTCATTCTAGTGCTAAGAAAGGATGGGTGGTCGAGGCAGAAGAGAAATATGATGTGGCTAACTTATTAGCTCTATCTCTTGTTTAA

Protein sequence

MEANTKARATLPFTHRGYTTTFLFHKKTKESEDGKKLNDMEFFQLTHSSAKKGWVVEAEEKYDVANLLALSLV*

Homology

[Close]

BLAST of CsGy6G019780 vs. NCBI nr
Match: KAE8647269.1 (hypothetical protein Csa_018247 [Cucumis sativus])

HSP 1 Score: 149 bits (375), Expect = 4.25e-45
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MEANTKARATLPFTHRGYTTTFLFHKKTKESEDGKKLNDMEFFQLTHSSAKKGWVVEAEE 60
          MEANTKARATLPFTHRGYTTTFLFHKKTKESEDGKKLNDMEFFQLTHSSAKKGWVVEAEE
Sbjct: 1  MEANTKARATLPFTHRGYTTTFLFHKKTKESEDGKKLNDMEFFQLTHSSAKKGWVVEAEE 60

Query: 61 KYDVANLLALSLV 73
          KYDVANLLALSLV
Sbjct: 61 KYDVANLLALSLV 73

[Close]

BLAST of CsGy6G019780 vs. NCBI nr
Match: KAE8651942.1 (hypothetical protein Csa_006405 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 1.61e-15
Identity = 39/62 (62.90%), Postives = 48/62 (77.42%), Query Frame = 0


Query: 2   EANTKARATLPFTHRGYTTTFLFHKKTKESEDGKKLNDMEFFQLTHSSAKKGWVVEAEEK 61
           EANTKAR+ LPFTHRG T TFL HK+ K  E+GK+++++E FQ THS  KK WV EA+ K
Sbjct: 95  EANTKARSKLPFTHRGGTVTFLRHKQ-KMKEEGKEISNIELFQPTHSDEKKRWVDEAKAK 154

Query: 62  YD 63
           YD
Sbjct: 155 YD 155

[Close]

BLAST of CsGy6G019780 vs. NCBI nr
Match: KAA0067296.1 (formin-like protein 4 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 53.1 bits (126), Expect = 3.27e-06
Identity = 22/34 (64.71%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 30 ESEDGKKLNDMEFFQLTHSSAKKGWVVEAEEKYD 63
          E EDGK+++++E FQLTHS+ K GWV EA+EKYD
Sbjct: 52 EKEDGKEVSEIELFQLTHSNEKNGWVNEAKEKYD 85

[Close]

BLAST of CsGy6G019780 vs. NCBI nr
Match: KAA0060322.1 (formin-like protein 4 isoform X2 [Cucumis melo var. makuwa] >TYK22072.1 formin-like protein 4 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 51.6 bits (122), Expect = 4.11e-06
Identity = 21/34 (61.76%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 30 ESEDGKKLNDMEFFQLTHSSAKKGWVVEAEEKYD 63
          E E+GK+++++E FQLTHS+ K GWV EA+EKYD
Sbjct: 52 EKEEGKEVSEIELFQLTHSNEKNGWVNEAKEKYD 85

[Close]

BLAST of CsGy6G019780 vs. NCBI nr
Match: KAA0068182.1 (formin-like protein 4 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 51.6 bits (122), Expect = 1.24e-05
Identity = 21/34 (61.76%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 30 ESEDGKKLNDMEFFQLTHSSAKKGWVVEAEEKYD 63
          E E+GK+++++E FQLTHS+ K GWV EA+EKYD
Sbjct: 52 EKEEGKEVSEIELFQLTHSNEKNGWVNEAKEKYD 85

[Close]

BLAST of CsGy6G019780 vs. ExPASy TrEMBL
Match: A0A0A0KDT8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G383550 PE=4 SV=1)

HSP 1 Score: 149 bits (375), Expect = 9.61e-45
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1   MEANTKARATLPFTHRGYTTTFLFHKKTKESEDGKKLNDMEFFQLTHSSAKKGWVVEAEE 60
           MEANTKARATLPFTHRGYTTTFLFHKKTKESEDGKKLNDMEFFQLTHSSAKKGWVVEAEE
Sbjct: 52  MEANTKARATLPFTHRGYTTTFLFHKKTKESEDGKKLNDMEFFQLTHSSAKKGWVVEAEE 111

Query: 61  KYDVANLLALSLV 73
           KYDVANLLALSLV
Sbjct: 112 KYDVANLLALSLV 124

[Close]

BLAST of CsGy6G019780 vs. ExPASy TrEMBL
Match: A0A5A7VLG0 (Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G001230 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.59e-06
Identity = 22/34 (64.71%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 30 ESEDGKKLNDMEFFQLTHSSAKKGWVVEAEEKYD 63
          E EDGK+++++E FQLTHS+ K GWV EA+EKYD
Sbjct: 52 EKEDGKEVSEIELFQLTHSNEKNGWVNEAKEKYD 85

[Close]

BLAST of CsGy6G019780 vs. ExPASy TrEMBL
Match: A0A5A7UWU9 (Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G00550 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.99e-06
Identity = 21/34 (61.76%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 30 ESEDGKKLNDMEFFQLTHSSAKKGWVVEAEEKYD 63
          E E+GK+++++E FQLTHS+ K GWV EA+EKYD
Sbjct: 52 EKEEGKEVSEIELFQLTHSNEKNGWVNEAKEKYD 85

[Close]

BLAST of CsGy6G019780 vs. ExPASy TrEMBL
Match: A0A5A7VIL7 (Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G001560 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 6.00e-06
Identity = 21/34 (61.76%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 30 ESEDGKKLNDMEFFQLTHSSAKKGWVVEAEEKYD 63
          E E+GK+++++E FQLTHS+ K GWV EA+EKYD
Sbjct: 52 EKEEGKEVSEIELFQLTHSNEKNGWVNEAKEKYD 85

[Close]

BLAST of CsGy6G019780 vs. ExPASy TrEMBL
Match: A0A5D3DBZ5 (Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00730 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 6.00e-06
Identity = 21/34 (61.76%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 30 ESEDGKKLNDMEFFQLTHSSAKKGWVVEAEEKYD 63
          E E+GK+++++E FQLTHS+ K GWV EA+EKYD
Sbjct: 52 EKEEGKEVSEIELFQLTHSNEKNGWVNEAKEKYD 85

The following BLAST results are available for this feature:

BLAST of CsGy6G019780 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy6G019780 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647269.1	4.25e-45	100.00	hypothetical protein Csa_018247 [Cucumis sativus]	[more]
KAE8651942.1	1.61e-15	62.90	hypothetical protein Csa_006405 [Cucumis sativus]	[more]
KAA0067296.1	3.27e-06	64.71	formin-like protein 4 isoform X2 [Cucumis melo var. makuwa]	[more]
KAA0060322.1	4.11e-06	61.76	formin-like protein 4 isoform X2 [Cucumis melo var. makuwa] >TYK22072.1 formin-l...	[more]
KAA0068182.1	1.24e-05	61.76	formin-like protein 4 isoform X2 [Cucumis melo var. makuwa]	[more]

BLAST of CsGy6G019780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDT8	9.61e-45	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G383550 PE=4 SV=1	[more]
A0A5A7VLG0	1.59e-06	64.71	Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A5A7UWU9	1.99e-06	61.76	Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5A7VIL7	6.00e-06	61.76	Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A5D3DBZ5	6.00e-06	61.76	Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]

BLAST of CsGy6G019780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004252	Probable transposase, Ptta/En/Spm, plant	PFAM	PF03004	Transposase_24	coord: 2..59 e-value: 5.3E-7 score: 29.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G019780.2	CsGy6G019780.2	mRNA