CsGy6G018820 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G018820
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	60S ribosomal protein L17
Location	Gy14Chr6: 19474571 .. 19476690 (+)
RNA-Seq Expression	CsGy6G018820
Synteny	CsGy6G018820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGGAAATAAAAAATGGACCAAGCCCAAAGTGAGCCCAAACCCAAAATTAGGATTAGTCTTTCGGCCCACATTGACTTCTTTTAGGGTTTTGTAGAGTTTGTCCGCTCTCTTCTTATAAACCTAATTCAAGCATTTCTCTTCCTCCGTTCACGGCCAAATCCAACTTTGTTTCTTCACAACCCCAAGTTGCAGCCGTCGCCATGGTTCTTCTTCTTCTTCTTTTTCTCTCTTCTTGATTTCACCTTCCAAACAATGCCTATCTCCGTTTCAAGTTAGCGACTAATCTTATATTACTGTTTTTGTTCATTGTTGCAGGTGAAGTATTCCAGGGAACCAGACAATCCCACCAAGTGTATTTTTCTTTTTCCACACTTTTCTTTTATGGATCTTCTTTGATTTCTATTCAAAACGTTGCATTTGATGTGATTGTTGCATACTAGTTTGAGTTTTTTTTTTTTACTTCAGAGATGTTTTCGCCCTGTACTGACACCCAGTTGTTCTTCCTTTCAGCCTGCAAAGCCCGTGGCTCGGACCTCAGAGTCCACTTTAAGGTAGGTTTTATTCCACTTCGTTGCTCTGTTGTCGTTTGGATTAACAATCACCTAGGGTATTTTTATGCTCCAATTTTGGTTATGGATCCTAATTTTTTTTTTCTGGAGCATAATTGTCTGTTTCCTTTGATGTGCTCCTTTGTGTTATTGAATGTCTACCAAATGTATAAATATACTCGATCCAATACCATATTCTCTCTTTGACTCAAGTAATCGTTTGGTCTAAGTGAAAATATAATAGTGTTTGTTCTTGACGCCATCTTAAGACATTCCTTTCTCGTAACAATCGGTTTCCGTATAGGAGCTTCTTATTTTTCCAGGCTTGAGAGAGCTAATGTTGGTATTATTCTTGTGATGACTTATTCTGATGAGATTAGTATAAGTTTCTTAGGTGAAGAAATAACTTATCTTAGACTTGTGTAACCTGATGATAAAAGCAGGGCTCTGTTGCCTTTAGTGAACAGGGCTCTCGTAAACTTCAGGGAAATTATATGCATTGTTATTGGGTGAACCTCTGTAAACAATAATTTCTGAAGGTTCAGTAAATGATGCTACATTACATATCTAAGCTTGTACTTTGATTTGCATATTTTAGCACCGAATTTCCGTTGCTCGGACTCATCACAATTTTTCCATTTCACATATTATAGAACACAAGGGAGACTGCACATGCCATTAGAAAGTTGCCACTGGCCAAGGCCAAGAGGTACCTAGAGGATGTACTTGCCCACAAACAAGCCATTCCTTTCCGTCGCTTCTGTGGTGGTGTTGGACGAACTGCTCAGGCAAAGAACAGGCACTCCAATGGCCAAGGACGCTGGCCCGTCAAATCTGCCAAGTTCATTCTTGATTTGCTTAAGAATGCTGAGAGCAATGCTGAAGTATGTCTTTCTTTTTCTGTTGCACTTTACCATTAACTGTTGTTTATCTTTAACTCCTCTTGCTCATAATTATTTCTCCTCTTTCAGGTGAAGGGTCTCGATGTTGATTTGCTCCACGTATCTCACGTCCAGGTAAACCAAGCTCAGAAACAAAGGCGTCGTACCTACCGTGCTCATGGAAGAATCAACCGTATGTTCTGATTACAATTTACTTATATTTGTATGAATTCACTTCAAACTATTCTGTCTAATCTCCAACTTTTTGCTATCTGCTTTTCAGCTTACATGTCTTCTCCTTGCCATATTGAGCTGATTTTGTCTGAAAAGGAAGAACCTGTGAAGAAGGAGGTATCATATATATCAATATTTACTTTTTTCACCGTTGTGTTGTAAAGGATAGTTTTGTTTAGACCTATTTCTTATTTTGTTGTAATTCATGATGTTGTTACAGCCCGAGACTCAGCTGGCGACTGGCAAACCTAAGAAAGGTCAAGCTATCCGTAGCGGCGCTTCCTCTTGAATGGCCTAAGTAGAAATTCTGTTGTGGGTTTTTGCTGTGCCATTTCTTTTTCTTTTTGAAGTGAGTTTAATTATTGATCAGATCACTATATAGAACGAGGGATTATTATTTAGATGTTTTGTGTGACAATGTTATATTTGGAACCTTTCGTAGTTCAATTTTCTTCA

mRNA sequence

CCGGAAATAAAAAATGGACCAAGCCCAAAGTGAGCCCAAACCCAAAATTAGGATTAGTCTTTCGGCCCACATTGACTTCTTTTAGGGTTTTGTAGAGTTTGTCCGCTCTCTTCTTATAAACCTAATTCAAGCATTTCTCTTCCTCCGTTCACGGCCAAATCCAACTTTGTTTCTTCACAACCCCAAGTTGCAGCCGTCGCCATGGTGAAGTATTCCAGGGAACCAGACAATCCCACCAAGTAGATGTTTTCGCCCTGTACTGACACCCAGTTGTTCTTCCTTTCAGCCTGCAAAGCCCGTGGCTCGGACCTCAGAGTCCACTTTAAGAACACAAGGGAGACTGCACATGCCATTAGAAAGTTGCCACTGGCCAAGGCCAAGAGGTACCTAGAGGATGTACTTGCCCACAAACAAGCCATTCCTTTCCGTCGCTTCTGTGGTGGTGTTGGACGAACTGCTCAGGCAAAGAACAGGCACTCCAATGGCCAAGGACGCTGGCCCGTCAAATCTGCCAAGTTCATTCTTGATTTGCTTAAGAATGCTGAGAGCAATGCTGAAGTGAAGGGTCTCGATGTTGATTTGCTCCACGTATCTCACGTCCAGGTAAACCAAGCTCAGAAACAAAGGCGTCGTACCTACCGTGCTCATGGAAGAATCAACCCTTACATGTCTTCTCCTTGCCATATTGAGCTGATTTTGTCTGAAAAGGAAGAACCTGTGAAGAAGGAGCCCGAGACTCAGCTGGCGACTGGCAAACCTAAGAAAGGTCAAGCTATCCGTAGCGGCGCTTCCTCTTGAATGGCCTAAGTAGAAATTCTGTTGTGGGTTTTTGCTGTGCCATTTCTTTTTCTTTTTGAAGTGAGTTTAATTATTGATCAGATCACTATATAGAACGAGGGATTATTATTTAGATGTTTTGTGTGACAATGTTATATTTGGAACCTTTCGTAGTTCAATTTTCTTCA

Coding sequence (CDS)

ATGTTTTCGCCCTGTACTGACACCCAGTTGTTCTTCCTTTCAGCCTGCAAAGCCCGTGGCTCGGACCTCAGAGTCCACTTTAAGAACACAAGGGAGACTGCACATGCCATTAGAAAGTTGCCACTGGCCAAGGCCAAGAGGTACCTAGAGGATGTACTTGCCCACAAACAAGCCATTCCTTTCCGTCGCTTCTGTGGTGGTGTTGGACGAACTGCTCAGGCAAAGAACAGGCACTCCAATGGCCAAGGACGCTGGCCCGTCAAATCTGCCAAGTTCATTCTTGATTTGCTTAAGAATGCTGAGAGCAATGCTGAAGTGAAGGGTCTCGATGTTGATTTGCTCCACGTATCTCACGTCCAGGTAAACCAAGCTCAGAAACAAAGGCGTCGTACCTACCGTGCTCATGGAAGAATCAACCCTTACATGTCTTCTCCTTGCCATATTGAGCTGATTTTGTCTGAAAAGGAAGAACCTGTGAAGAAGGAGCCCGAGACTCAGCTGGCGACTGGCAAACCTAAGAAAGGTCAAGCTATCCGTAGCGGCGCTTCCTCTTGA

Protein sequence

MFSPCTDTQLFFLSACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSGASS*

Homology

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BLAST of CsGy6G018820 vs. ExPASy Swiss-Prot
Match: P51413 (60S ribosomal protein L17-2 OS=Arabidopsis thaliana OX=3702 GN=RPL17B PE=2 SV=2)

HSP 1 Score: 289.7 bits (740), Expect = 2.4e-77
Identity = 144/163 (88.34%), Postives = 151/163 (92.64%), Query Frame = 0


Query: 15  ACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA 74
           +CKARGSDLRVHFKNTRETAHAIRKLPL KAKRYLEDV+AHKQAIPF RFC GVGRTAQA
Sbjct: 14  SCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQA 73

Query: 75  KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRA 134
           KNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD L +SH+QVNQA KQRRRTYRA
Sbjct: 74  KNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRA 133

Query: 135 HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQA 178
           HGRINPYMS+PCHIELILSEKEEPVKKEPETQLA  K KK  A
Sbjct: 134 HGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKSAA 175

[Close]

BLAST of CsGy6G018820 vs. ExPASy Swiss-Prot
Match: Q93VI3 (60S ribosomal protein L17-1 OS=Arabidopsis thaliana OX=3702 GN=RPL17A PE=2 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 3.1e-77
Identity = 143/161 (88.82%), Postives = 151/161 (93.79%), Query Frame = 0


Query: 15  ACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA 74
           +CKARG+DLRVHFKNTRETAHAIRKLPL KAKRYLEDV+AHKQAIPF RFC GVGRTAQA
Sbjct: 14  SCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQA 73

Query: 75  KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRA 134
           KNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD L +SH+QVNQA KQRRRTYRA
Sbjct: 74  KNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRA 133

Query: 135 HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKG 176
           HGRINPYMS+PCHIELILSEKEEPVKKEPETQLA  K KKG
Sbjct: 134 HGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKG 173

[Close]

BLAST of CsGy6G018820 vs. ExPASy Swiss-Prot
Match: O48557 (60S ribosomal protein L17 OS=Zea mays OX=4577 GN=RPL17 PE=2 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 3.6e-73
Identity = 135/157 (85.99%), Postives = 146/157 (92.99%), Query Frame = 0


Query: 15  ACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA 74
           + KA G DLRVHFKNTRETA A+RKLPL KAKRYLEDV+AHKQAIPFRR+CGGVGRTAQA
Sbjct: 14  SAKAMGRDLRVHFKNTRETAFALRKLPLTKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQA 73

Query: 75  KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRA 134
           K+RHSNGQGRWPVKSA+FILDLLKNAESNA+VKGLDVD L+VSH+QVNQAQKQRRRTYRA
Sbjct: 74  KSRHSNGQGRWPVKSARFILDLLKNAESNADVKGLDVDNLYVSHIQVNQAQKQRRRTYRA 133

Query: 135 HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGK 172
           HGRINPYMSSPCHIELILSEKEEPVKKE +  +A  K
Sbjct: 134 HGRINPYMSSPCHIELILSEKEEPVKKEADNIVAARK 170

[Close]

BLAST of CsGy6G018820 vs. ExPASy Swiss-Prot
Match: P35266 (60S ribosomal protein L17-1 OS=Hordeum vulgare OX=4513 PE=2 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 3.4e-71
Identity = 130/154 (84.42%), Postives = 141/154 (91.56%), Query Frame = 0


Query: 15  ACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA 74
           + KA G DLRVHFKNTRETA A+RK+PL KAKRYLEDVLAHKQAIPFRR+C GVGRTAQ 
Sbjct: 14  SAKAMGRDLRVHFKNTRETAFALRKMPLNKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQV 73

Query: 75  KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRA 134
           KNR  NGQGRWP KSAKF+LDLLKNAESNAEVKGLDVD L++SH+QVNQAQKQRRRTYRA
Sbjct: 74  KNRQPNGQGRWPAKSAKFVLDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRA 133

Query: 135 HGRINPYMSSPCHIELILSEKEEPVKKEPETQLA 169
           HGRINPYMS+PCHIELILSEKEEPVKKE E+ +A
Sbjct: 134 HGRINPYMSNPCHIELILSEKEEPVKKEAESHIA 167

[Close]

BLAST of CsGy6G018820 vs. ExPASy Swiss-Prot
Match: P35267 (60S ribosomal protein L17-2 OS=Hordeum vulgare OX=4513 PE=2 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.4e-69
Identity = 128/157 (81.53%), Postives = 141/157 (89.81%), Query Frame = 0


Query: 15  ACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA 74
           + KA G DLRVHFKNTRETA A+R++PL KAKRYLEDVLAHKQAIPFRR+C GVGRTAQ 
Sbjct: 14  SAKACGKDLRVHFKNTRETAFALRRMPLGKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQV 73

Query: 75  KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRA 134
           KNR  NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD L++SH+QVNQAQKQRRRTYRA
Sbjct: 74  KNRQPNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDNLYISHIQVNQAQKQRRRTYRA 133

Query: 135 HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGK 172
           HGRINPYMS+PCHIELILSEKEEPVKKE +  +A  K
Sbjct: 134 HGRINPYMSNPCHIELILSEKEEPVKKEADNVVAPRK 170

[Close]

BLAST of CsGy6G018820 vs. NCBI nr
Match: KGN47616.1 (hypothetical protein Csa_019028 [Cucumis sativus])

HSP 1 Score: 369 bits (946), Expect = 1.27e-128
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MFSPCTDTQLFFLSACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIP 60
           MFSPCTDTQLFFLSACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIP
Sbjct: 1   MFSPCTDTQLFFLSACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIP 60

Query: 61  FRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQ 120
           FRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQ
Sbjct: 61  FRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQ 120

Query: 121 VNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRS 180
           VNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRS
Sbjct: 121 VNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRS 180

Query: 181 GASS 184
           GASS
Sbjct: 181 GASS 184

[Close]

BLAST of CsGy6G018820 vs. NCBI nr
Match: KAA0064735.1 (60S ribosomal protein L17-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 357 bits (917), Expect = 4.29e-124
Identity = 179/184 (97.28%), Postives = 180/184 (97.83%), Query Frame = 0


Query: 1   MFSPCTDTQLFFLSACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIP 60
           MFSP TDTQ FF SACKARGSDLRVHFKNTRETA AIRKLPLAKAKRYLEDVLAHKQAIP
Sbjct: 8   MFSPFTDTQFFFFSACKARGSDLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIP 67

Query: 61  FRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQ 120
           FRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSH+Q
Sbjct: 68  FRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQ 127

Query: 121 VNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRS 180
           VNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRS
Sbjct: 128 VNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRS 187

Query: 181 GASS 184
           GASS
Sbjct: 188 GASS 191

[Close]

BLAST of CsGy6G018820 vs. NCBI nr
Match: KAG7029553.1 (60S ribosomal protein L17-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 342 bits (877), Expect = 7.13e-118
Identity = 173/182 (95.05%), Postives = 175/182 (96.15%), Query Frame = 0


Query: 3   SPCTDTQLFFLSACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFR 62
           SP     + F S+CKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFR
Sbjct: 18  SPLFFLWILFDSSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFR 77

Query: 63  RFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVN 122
           RFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVN
Sbjct: 78  RFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVN 137

Query: 123 QAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSGA 182
           QAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSGA
Sbjct: 138 QAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSGA 197

Query: 183 SS 184
           SS
Sbjct: 198 SS 199

[Close]

BLAST of CsGy6G018820 vs. NCBI nr
Match: XP_004144196.1 (60S ribosomal protein L17-2 [Cucumis sativus] >XP_022132326.1 60S ribosomal protein L17-2-like [Momordica charantia] >XP_022962539.1 60S ribosomal protein L17-2-like [Cucurbita moschata] >KAG6598615.1 60S ribosomal protein L17-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 338 bits (866), Expect = 1.93e-116
Identity = 169/170 (99.41%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 15  ACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA 74
           +CKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA
Sbjct: 14  SCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA 73

Query: 75  KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRA 134
           KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRA
Sbjct: 74  KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRA 133

Query: 135 HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSGASS 184
           HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSGASS
Sbjct: 134 HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSGASS 183

[Close]

BLAST of CsGy6G018820 vs. NCBI nr
Match: XP_038885177.1 (60S ribosomal protein L17-2-like [Benincasa hispida])

HSP 1 Score: 337 bits (865), Expect = 2.74e-116
Identity = 168/170 (98.82%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 15  ACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA 74
           +CKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA
Sbjct: 14  SCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA 73

Query: 75  KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRA 134
           KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSH+QVNQAQKQRRRTYRA
Sbjct: 74  KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQVNQAQKQRRRTYRA 133

Query: 135 HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSGASS 184
           HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSGASS
Sbjct: 134 HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSGASS 183

[Close]

BLAST of CsGy6G018820 vs. ExPASy TrEMBL
Match: A0A0A0KIM9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G365170 PE=3 SV=1)

HSP 1 Score: 369 bits (946), Expect = 6.13e-129
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MFSPCTDTQLFFLSACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIP 60
           MFSPCTDTQLFFLSACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIP
Sbjct: 1   MFSPCTDTQLFFLSACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIP 60

Query: 61  FRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQ 120
           FRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQ
Sbjct: 61  FRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQ 120

Query: 121 VNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRS 180
           VNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRS
Sbjct: 121 VNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRS 180

Query: 181 GASS 184
           GASS
Sbjct: 181 GASS 184

[Close]

BLAST of CsGy6G018820 vs. ExPASy TrEMBL
Match: A0A5A7VFR9 (60S ribosomal protein L17-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G00390 PE=3 SV=1)

HSP 1 Score: 357 bits (917), Expect = 2.08e-124
Identity = 179/184 (97.28%), Postives = 180/184 (97.83%), Query Frame = 0


Query: 1   MFSPCTDTQLFFLSACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIP 60
           MFSP TDTQ FF SACKARGSDLRVHFKNTRETA AIRKLPLAKAKRYLEDVLAHKQAIP
Sbjct: 8   MFSPFTDTQFFFFSACKARGSDLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIP 67

Query: 61  FRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQ 120
           FRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSH+Q
Sbjct: 68  FRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQ 127

Query: 121 VNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRS 180
           VNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRS
Sbjct: 128 VNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRS 187

Query: 181 GASS 184
           GASS
Sbjct: 188 GASS 191

[Close]

BLAST of CsGy6G018820 vs. ExPASy TrEMBL
Match: A0A6J1BRY8 (60S ribosomal protein L17-2-like OS=Momordica charantia OX=3673 GN=LOC111005205 PE=3 SV=1)

HSP 1 Score: 338 bits (866), Expect = 9.34e-117
Identity = 169/170 (99.41%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 15  ACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA 74
           +CKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA
Sbjct: 14  SCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA 73

Query: 75  KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRA 134
           KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRA
Sbjct: 74  KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRA 133

Query: 135 HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSGASS 184
           HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSGASS
Sbjct: 134 HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSGASS 183

[Close]

BLAST of CsGy6G018820 vs. ExPASy TrEMBL
Match: A0A6J1HHD8 (60S ribosomal protein L17-2-like OS=Cucurbita moschata OX=3662 GN=LOC111462939 PE=3 SV=1)

HSP 1 Score: 338 bits (866), Expect = 9.34e-117
Identity = 169/170 (99.41%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 15  ACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA 74
           +CKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA
Sbjct: 14  SCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA 73

Query: 75  KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRA 134
           KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRA
Sbjct: 74  KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRA 133

Query: 135 HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSGASS 184
           HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSGASS
Sbjct: 134 HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSGASS 183

[Close]

BLAST of CsGy6G018820 vs. ExPASy TrEMBL
Match: A0A6J1KDD3 (60S ribosomal protein L17-2-like OS=Cucurbita maxima OX=3661 GN=LOC111492225 PE=3 SV=1)

HSP 1 Score: 334 bits (856), Expect = 3.13e-115
Identity = 167/170 (98.24%), Postives = 169/170 (99.41%), Query Frame = 0


Query: 15  ACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA 74
           +CKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA
Sbjct: 14  SCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA 73

Query: 75  KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRA 134
           KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRA
Sbjct: 74  KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRA 133

Query: 135 HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSGASS 184
           HGRINPYMSSPCHIELILSEKEE VKKEPETQLATGKPKKGQA+RSGASS
Sbjct: 134 HGRINPYMSSPCHIELILSEKEEAVKKEPETQLATGKPKKGQALRSGASS 183

[Close]

BLAST of CsGy6G018820 vs. TAIR 10
Match: AT1G67430.1 (Ribosomal protein L22p/L17e family protein )

HSP 1 Score: 289.7 bits (740), Expect = 1.7e-78
Identity = 144/163 (88.34%), Postives = 151/163 (92.64%), Query Frame = 0


Query: 15  ACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA 74
           +CKARGSDLRVHFKNTRETAHAIRKLPL KAKRYLEDV+AHKQAIPF RFC GVGRTAQA
Sbjct: 14  SCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQA 73

Query: 75  KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRA 134
           KNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD L +SH+QVNQA KQRRRTYRA
Sbjct: 74  KNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRA 133

Query: 135 HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQA 178
           HGRINPYMS+PCHIELILSEKEEPVKKEPETQLA  K KK  A
Sbjct: 134 HGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKSAA 175

[Close]

BLAST of CsGy6G018820 vs. TAIR 10
Match: AT1G27400.1 (Ribosomal protein L22p/L17e family protein )

HSP 1 Score: 289.3 bits (739), Expect = 2.2e-78
Identity = 143/161 (88.82%), Postives = 151/161 (93.79%), Query Frame = 0


Query: 15  ACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA 74
           +CKARG+DLRVHFKNTRETAHAIRKLPL KAKRYLEDV+AHKQAIPF RFC GVGRTAQA
Sbjct: 14  SCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQA 73

Query: 75  KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRA 134
           KNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD L +SH+QVNQA KQRRRTYRA
Sbjct: 74  KNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRA 133

Query: 135 HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKG 176
           HGRINPYMS+PCHIELILSEKEEPVKKEPETQLA  K KKG
Sbjct: 134 HGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKG 173

[Close]

BLAST of CsGy6G018820 vs. TAIR 10
Match: AT1G67430.2 (Ribosomal protein L22p/L17e family protein )

HSP 1 Score: 188.7 bits (478), Expect = 4.1e-48
Identity = 106/163 (65.03%), Postives = 110/163 (67.48%), Query Frame = 0


Query: 15  ACKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQA 74
           +CKARGSDLRVHFKNTRETAHAIRKLPL KAKRYLEDV+AHKQAIPF RFC GVGRTAQA
Sbjct: 14  SCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQA 73

Query: 75  KNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQVNQAQKQRRRTYRA 134
           KNRHSNGQGRWP KSA+F+LDLLKNAESNA                              
Sbjct: 74  KNRHSNGQGRWPAKSAQFVLDLLKNAESNA------------------------------ 131

Query: 135 HGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQA 178
                         ELILSEKEEPVKKEPETQLA  K KK  A
Sbjct: 134 --------------ELILSEKEEPVKKEPETQLA-AKSKKSAA 131

The following BLAST results are available for this feature:

BLAST of CsGy6G018820 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P51413	2.4e-77	88.34	60S ribosomal protein L17-2 OS=Arabidopsis thaliana OX=3702 GN=RPL17B PE=2 SV=2	[more]
Q93VI3	3.1e-77	88.82	60S ribosomal protein L17-1 OS=Arabidopsis thaliana OX=3702 GN=RPL17A PE=2 SV=1	[more]
O48557	3.6e-73	85.99	60S ribosomal protein L17 OS=Zea mays OX=4577 GN=RPL17 PE=2 SV=1	[more]
P35266	3.4e-71	84.42	60S ribosomal protein L17-1 OS=Hordeum vulgare OX=4513 PE=2 SV=1	[more]
P35267	1.4e-69	81.53	60S ribosomal protein L17-2 OS=Hordeum vulgare OX=4513 PE=2 SV=1	[more]

BLAST of CsGy6G018820 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47616.1	1.27e-128	100.00	hypothetical protein Csa_019028 [Cucumis sativus]	[more]
KAA0064735.1	4.29e-124	97.28	60S ribosomal protein L17-2-like [Cucumis melo var. makuwa]	[more]
KAG7029553.1	7.13e-118	95.05	60S ribosomal protein L17-2 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_004144196.1	1.93e-116	99.41	60S ribosomal protein L17-2 [Cucumis sativus] >XP_022132326.1 60S ribosomal prot...	[more]
XP_038885177.1	2.74e-116	98.82	60S ribosomal protein L17-2-like [Benincasa hispida]	[more]

BLAST of CsGy6G018820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIM9	6.13e-129	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G365170 PE=3 SV=1	[more]
A0A5A7VFR9	2.08e-124	97.28	60S ribosomal protein L17-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A6J1BRY8	9.34e-117	99.41	60S ribosomal protein L17-2-like OS=Momordica charantia OX=3673 GN=LOC111005205 ...	[more]
A0A6J1HHD8	9.34e-117	99.41	60S ribosomal protein L17-2-like OS=Cucurbita moschata OX=3662 GN=LOC111462939 P...	[more]
A0A6J1KDD3	3.13e-115	98.24	60S ribosomal protein L17-2-like OS=Cucurbita maxima OX=3661 GN=LOC111492225 PE=...	[more]

BLAST of CsGy6G018820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67430.1	1.7e-78	88.34	Ribosomal protein L22p/L17e family protein	[more]
AT1G27400.1	2.2e-78	88.82	Ribosomal protein L22p/L17e family protein	[more]
AT1G67430.2	4.1e-48	65.03	Ribosomal protein L22p/L17e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036394	Ribosomal protein L22/L17 superfamily	GENE3D	3.90.470.10	Ribosomal protein L22/L17	coord: 13..183 e-value: 4.3E-70 score: 237.1
IPR036394	Ribosomal protein L22/L17 superfamily	SUPERFAMILY	54843	Ribosomal protein L22	coord: 15..155
IPR005721	Ribosomal protein L22/L17, eukaryotic/archaeal	TIGRFAM	TIGR01038	TIGR01038	coord: 15..155 e-value: 1.1E-57 score: 192.1
IPR005721	Ribosomal protein L22/L17, eukaryotic/archaeal	PANTHER	PTHR11593	60S RIBOSOMAL PROTEIN L17	coord: 15..184
IPR001063	Ribosomal protein L22/L17	PFAM	PF00237	Ribosomal_L22	coord: 18..153 e-value: 1.0E-38 score: 131.7
IPR001063	Ribosomal protein L22/L17	CDD	cd00336	Ribosomal_L22	coord: 16..152 e-value: 2.34014E-37 score: 122.985
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..184
None	No IPR available	PANTHER	PTHR11593:SF35	60S RIBOSOMAL PROTEIN L17-2-LIKE	coord: 15..184
IPR018260	Ribosomal protein L22/L17, conserved site	PROSITE	PS00464	RIBOSOMAL_L22	coord: 128..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G018820.1	CsGy6G018820.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome