CsGy6G017730 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G017730
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Pentatricopeptide repeat-containing protein
Location	Gy14Chr6: 18554799 .. 18557084 (-)
RNA-Seq Expression	CsGy6G017730
Synteny	CsGy6G017730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGGATACCAATTGAAAGCATTCCCAGTGACGTTTGCTGGAACTAACCTTTGTGCAATGGAAGATGAAGTTTGGAAGAAAACTGATACATACATATTCATGCTTCAAGAGACTGGAGAGACGTGAAGATGATGTAATGCTTCCTCCAACTCTCATTGTGGCCACCTGTTTAAATAATTATATTATCCATGTTTATTTTTTGAGCTTAACTCTTACAAGCTTGCTCACCTTAACCCTATCTTAACTTTTATCTCATTGAAAAATCACAATTTCATGTAGGATTAACGATGGAAGTTATTTCCCATTACAGTATCCAATTTTTGCTATTGGTCATTGAAGAGCATTTCATGTTCAAGAGCTCAACGTGAAGAAACTAGGGTCTTGATCTACCCAGCCTCTTGAATCAGTCTTATAATTCTCATCAAGTCAAGCCATTCACTAACTAAGCTGCCAAGATGTGCTTAAATAGTGGAAATATAGCGAGTTCATTGGGGTGCTGTAAATGGGTTCAAAGCATGCTGGCTGGGAGAAGGATAAGCTGTGTTCTGTAATTCCAACACTACAACAAACTTGGTGATACCGCATGTTTCTACTTGAAGGGTGAGGGGTTTTAGTTTTAGTTTCCTTTGTCGATACATAGTACAACCCACTGATTATTTATTCTTTGACATAAATATTCATAAATTGTATGATCTGATTCTAATTGAAAATAGGACAAGAACTGACCATACAATTGACAAATATTTTCATGATCAAAAGGTCACTTTGGTGCTAATAACTTTGTAGAAATGATACTATAATATGAGAAAGATCGTATTGTATTAAAAAATCTTATTGATGCATGCATCCCTTTTCTATTCCATGCTTTCTCAGTAAGATAATTATCTGGTTTTTCTTTTAAATGCTCTGATTCTTTCTAGGGTCTTTGTAAGCTCTTGTTCCTCTCATAGGTTTGATTACTAATAGTAGAAAAGACGTAGTCGATTTTGTGTTACTGGGGAGATAAACTAAAACATAAATCGACGGATGACTTGCACTGAACAGACTGTTCTCTCCATCAAAAGTTTTTTGTTCCGAAGTAGCTCTCAGGATAGCTCATCTGCACAATGCAACTGACCAGTTTGTCTGCTAGACTAGTAGCAGCATGTCTATACAGCAAGCATTGGATCCTGAGTCATCTTCTTGGTGTGAAGAAATAGGTAAGGAAGCTGTTGCACATATTGTCTATGTTTATGCCTCGTGCCCACATCACTGTTCAGGAAAAAATGGGGAGGGGTTGTCTAATAGCATGGCTGATGGCTATCATTCAACCTCATGAGAGATTATTTTTATTCATTTAAAACGAAGAACCTCGGACAAATTATACTCTAAAATGGAATTCTTAGATCTTTTGCCTTTTTCTCTACTGTGGATGGGCATGTGCTTCCACCTGCTATTCAATATGTCTAAAATGCTGCAATGTACTTCCTTCTCAGTTCAGTTGCCTGTTAGAGTGAAAAATCCAGGTAATAAAGATCAAAGATTGAGAGAATAGGGAAGTGCCTGACACTGGTATGTCAAAGAAATTAGTGACACAACATGGATGCTGAAGTTTTAACTCACGATAAGCGTTGACTCTTGCTTTTTTCACTTACATAATGGCATGACACCATTCTGGTGCTGTCTGTGCCCTGTGACTGTGAGTTGGGCTAACTGAGGTGCTTACGACAATGATGCTGGGATGATGAGAAAGTAGCTTGTACCAGCTCCAAGGAATTTGCAAGTTTCCACCACCTTGATTTGAGGCTCCACCTCTTTTTTGTCTTTTTCTTTGTTTTTTATTTTGGGTGCTGATGAAGGGCAAGTAACTACTGAAGTGGTTTACCCTCCATCTCTCAGGTTGAAATTCATAGTTAATTATTGTAAAGAAATGTAGAATGCCGTTGAAGTGTTCATTTCAAAGATGGGGCAAAATGTTTCCCTTTCGTGATTTTACATCTAGAGATGTATTATGCTGCTTTTCAGGCCAATATGCCACCTAAGGAACACTTTTCTCTACAGGTGACGTATTTACCAGAATTATTTTTAGAGATTGGCTTTCAAGAGTTTCCGTTTCTTCTTTCCTCCAGTTTCTTTCTTGAAACCAAAAACGAAAAAAGCAATATCCACAGATGTTATCTTATATTTGTTCAACTCATGATTGACTTGAATTGCATCTTTAGACTCATTTCATTGAGTTATGGCACACGCTTTCAGATGTTCCCTATTTTTATTCAGTTATGCTTTGTAAAAGGGACTGGATAG

mRNA sequence

ATGGTGGGATACCAATTGAAAGCATTCCCAGTGACGTTTGCTGGAACTAACCTTTGTGCAATGGAAGATGAAGTTTGGAAGAAAACTGATACATACATATTCATGCTTCAAGAGACTGGAGAGACGGTCTTTACTAGTAGCAGCATGTCTATACAGCAAGCATTGGATCCTGAGTCATCTTCTTGGTGTGAAGAAATAGTTCAGTTGCCTGTTAGAGTGAAAAATCCAGAGATGTATTATGCTGCTTTTCAGGCCAATATGCCACCTAAGGAACACTTTTCTCTACAGGTGACGTATTTACCAGAATTATTTTTAGAGATTGGCTTTCAAGAGTTTCCGTTTCTTCTTTCCTCCAGTTTCTTTCTTGAAACCAAAAACGAAAAAAGCAATATCCACAGATGTTATCTTATATTTGTTCAACTCATGATTGACTTGAATTGCATCTTTAGACTCATTTCATTGAGTTATGGCACACGCTTTCAGATGTTCCCTATTTTTATTCAGTTATGCTTTGTAAAAGGGACTGGATAG

Coding sequence (CDS)

ATGGTGGGATACCAATTGAAAGCATTCCCAGTGACGTTTGCTGGAACTAACCTTTGTGCAATGGAAGATGAAGTTTGGAAGAAAACTGATACATACATATTCATGCTTCAAGAGACTGGAGAGACGGTCTTTACTAGTAGCAGCATGTCTATACAGCAAGCATTGGATCCTGAGTCATCTTCTTGGTGTGAAGAAATAGTTCAGTTGCCTGTTAGAGTGAAAAATCCAGAGATGTATTATGCTGCTTTTCAGGCCAATATGCCACCTAAGGAACACTTTTCTCTACAGGTGACGTATTTACCAGAATTATTTTTAGAGATTGGCTTTCAAGAGTTTCCGTTTCTTCTTTCCTCCAGTTTCTTTCTTGAAACCAAAAACGAAAAAAGCAATATCCACAGATGTTATCTTATATTTGTTCAACTCATGATTGACTTGAATTGCATCTTTAGACTCATTTCATTGAGTTATGGCACACGCTTTCAGATGTTCCCTATTTTTATTCAGTTATGCTTTGTAAAAGGGACTGGATAG

Protein sequence

MVGYQLKAFPVTFAGTNLCAMEDEVWKKTDTYIFMLQETGETVFTSSSMSIQQALDPESSSWCEEIVQLPVRVKNPEMYYAAFQANMPPKEHFSLQVTYLPELFLEIGFQEFPFLLSSSFFLETKNEKSNIHRCYLIFVQLMIDLNCIFRLISLSYGTRFQMFPIFIQLCFVKGTG*

Homology

[Close]

BLAST of CsGy6G017730 vs. NCBI nr
Match: TYK23780.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 9.52e-17
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 1   MVGYQLKAFPVTFAGTNLCAMEDEVWKKTDTYIFMLQETGET 42
           MVGYQLKAF VTFAGTNLCAMEDEVWKKTDTYIFMLQETGET
Sbjct: 692 MVGYQLKAFAVTFAGTNLCAMEDEVWKKTDTYIFMLQETGET 733

[Close]

BLAST of CsGy6G017730 vs. NCBI nr
Match: XP_028060025.1 (uncharacterized protein LOC114263646 [Camellia sinensis])

HSP 1 Score: 55.1 bits (131), Expect = 2.29e-05
Identity = 24/40 (60.00%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 2   VGYQLKAFPVTFAGTNLCAMEDEVWKKTDTYIFMLQETGE 41
           +GYQ++A PV+F GTN+ AM+DEV KKTD Y+ MLQ++ E
Sbjct: 65  MGYQMEASPVSFLGTNMSAMKDEVSKKTDMYVNMLQQSAE 104

[Close]

BLAST of CsGy6G017730 vs. NCBI nr
Match: THG18626.1 (hypothetical protein TEA_029950 [Camellia sinensis var. sinensis])

HSP 1 Score: 54.7 bits (130), Expect = 4.16e-05
Identity = 23/40 (57.50%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 2   VGYQLKAFPVTFAGTNLCAMEDEVWKKTDTYIFMLQETGE 41
           +GYQ++A P++F GTN+ AM+DEV KKTD Y+ MLQ++ E
Sbjct: 65  MGYQMEASPISFLGTNMSAMKDEVSKKTDMYVNMLQQSAE 104

[Close]

BLAST of CsGy6G017730 vs. NCBI nr
Match: XP_028060023.1 (probable receptor-like serine/threonine-protein kinase At5g57670 isoform X1 [Camellia sinensis])

HSP 1 Score: 54.7 bits (130), Expect = 4.49e-05
Identity = 23/40 (57.50%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 2   VGYQLKAFPVTFAGTNLCAMEDEVWKKTDTYIFMLQETGE 41
           +GYQ++A P++F GTN+ AM+DEV KKTD Y+ MLQ++ E
Sbjct: 65  MGYQMEASPISFLGTNMSAMKDEVSKKTDMYVNMLQQSAE 104

[Close]

BLAST of CsGy6G017730 vs. NCBI nr
Match: XP_031742726.1 (uncharacterized protein LOC116404465 [Cucumis sativus])

HSP 1 Score: 49.3 bits (116), Expect = 7.38e-04
Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 2  VGYQLKAFPVTFAGTNLCAMEDEVWKKTDTYIFMLQETGET 42
          +GYQLKA P +  GT++ AME+EV KK D YI MLQ + ET
Sbjct: 58 MGYQLKACPDSIFGTSVRAMEEEVSKKADAYITMLQRSAET 98

[Close]

BLAST of CsGy6G017730 vs. ExPASy TrEMBL
Match: A0A5D3DK49 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G001070 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.61e-17
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 1   MVGYQLKAFPVTFAGTNLCAMEDEVWKKTDTYIFMLQETGET 42
           MVGYQLKAF VTFAGTNLCAMEDEVWKKTDTYIFMLQETGET
Sbjct: 692 MVGYQLKAFAVTFAGTNLCAMEDEVWKKTDTYIFMLQETGET 733

[Close]

BLAST of CsGy6G017730 vs. ExPASy TrEMBL
Match: A0A4S4ER28 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_029950 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.01e-05
Identity = 23/40 (57.50%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 2   VGYQLKAFPVTFAGTNLCAMEDEVWKKTDTYIFMLQETGE 41
           +GYQ++A P++F GTN+ AM+DEV KKTD Y+ MLQ++ E
Sbjct: 65  MGYQMEASPISFLGTNMSAMKDEVSKKTDMYVNMLQQSAE 104

[Close]

BLAST of CsGy6G017730 vs. ExPASy TrEMBL
Match: A0A1S3B3G5 (probable serine/threonine-protein kinase RLCKVII OS=Cucumis melo OX=3656 GN=LOC103485743 PE=4 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 8.78e-04
Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = 0


Query: 2  VGYQLKAFPVTFAGTNLCAMEDEVWKKTDTYIFMLQETGET 42
          +GYQLKA P +  GT++ AME+EV KK D YI MLQ++ ET
Sbjct: 58 LGYQLKACPDSIFGTSVRAMEEEVSKKADAYIAMLQQSAET 98

[Close]

BLAST of CsGy6G017730 vs. ExPASy TrEMBL
Match: A0A5D3DJP9 (Putative serine/threonine-protein kinase RLCKVII OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G001090 PE=4 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 8.79e-04
Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = 0


Query: 2  VGYQLKAFPVTFAGTNLCAMEDEVWKKTDTYIFMLQETGET 42
          +GYQLKA P +  GT++ AME+EV KK D YI MLQ++ ET
Sbjct: 58 LGYQLKACPDSIFGTSVRAMEEEVSKKADAYIAMLQQSAET 98

The following BLAST results are available for this feature:

BLAST of CsGy6G017730 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy6G017730 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK23780.1	9.52e-17	97.62	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]
XP_028060025.1	2.29e-05	60.00	uncharacterized protein LOC114263646 [Camellia sinensis]	[more]
THG18626.1	4.16e-05	57.50	hypothetical protein TEA_029950 [Camellia sinensis var. sinensis]	[more]
XP_028060023.1	4.49e-05	57.50	probable receptor-like serine/threonine-protein kinase At5g57670 isoform X1 [Cam...	[more]
XP_031742726.1	7.38e-04	58.54	uncharacterized protein LOC116404465 [Cucumis sativus]	[more]

BLAST of CsGy6G017730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DK49	4.61e-17	97.62	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A4S4ER28	2.01e-05	57.50	Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0299...	[more]
A0A1S3B3G5	8.78e-04	58.54	probable serine/threonine-protein kinase RLCKVII OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A5D3DJP9	8.79e-04	58.54	Putative serine/threonine-protein kinase RLCKVII OS=Cucumis melo var. makuwa OX=...	[more]

BLAST of CsGy6G017730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G017730.2	CsGy6G017730.2	mRNA