CsGy6G017445 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G017445
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	extensin-3-like
Location	Gy14Chr6: 18189031 .. 18189638 (-)
RNA-Seq Expression	CsGy6G017445
Synteny	CsGy6G017445

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGAGGTTGAGAACGATAATGGAGTCACGTAACCCCATTTTTGTGTTCTTCCTCTTCATCATCATGTCGTTGCTCTCTTTAAATTTGCCATCGAATTCTGCTGAGCACGATATTCCCTCATCTCTTTTGTCACCGCCGCTAATGCCACCGATCACTAGACCTATAGTTCCTCATCACCCGTTTACATTCCCTTCTCCATTTAGGAAGACTTTTAGACACACATGGTTGCCACCACCATCGCCACCGGCGCAACAAGAATTGGAGAGGCCAATAGTTCCTTATTTTCCCTATAAATTTCCACCACCTCCATCAAGAAAACAGGCCAATCCTCCTCCGAGCTACCATGCCTTTCCCCCACCAGCCTTACTGCTCCTACCCAGAAAACTTTACATGTCTGAGGTCAGGAGGGCGACGCCTCCACCACCGCCTATAAAGCCATATCAGTGGCCAAAAGGGAAGATCCGTAAATCACCCCCACCTCCTTTCTAATTCTTCTACGTTTTCTTATATATATTCAATAAATTTCATTGTCTTTAATTTGGCCTTACTTAGTTACTTTACTTATCTTCTCATCAAAGCTTGTCCTTGAAAAAAAATATCAATCACCG

mRNA sequence

GAGAGGTTGAGAACGATAATGGAGTCACGTAACCCCATTTTTGTGTTCTTCCTCTTCATCATCATGTCGTTGCTCTCTTTAAATTTGCCATCGAATTCTGCTGAGCACGATATTCCCTCATCTCTTTTGTCACCGCCGCTAATGCCACCGATCACTAGACCTATAGTTCCTCATCACCCGTTTACATTCCCTTCTCCATTTAGGAAGACTTTTAGACACACATGGTTGCCACCACCATCGCCACCGGCGCAACAAGAATTGGAGAGGCCAATAGTTCCTTATTTTCCCTATAAATTTCCACCACCTCCATCAAGAAAACAGGCCAATCCTCCTCCGAGCTACCATGCCTTTCCCCCACCAGCCTTACTGCTCCTACCCAGAAAACTTTACATGTCTGAGGTCAGGAGGGCGACGCCTCCACCACCGCCTATAAAGCCATATCAGTGGCCAAAAGGGAAGATCCGTAAATCACCCCCACCTCCTTTCTAATTCTTCTACGTTTTCTTATATATATTCAATAAATTTCATTGTCTTTAATTTGGCCTTACTTAGTTACTTTACTTATCTTCTCATCAAAGCTTGTCCTTGAAAAAAAATATCAATCACCG

Coding sequence (CDS)

ATGGAGTCACGTAACCCCATTTTTGTGTTCTTCCTCTTCATCATCATGTCGTTGCTCTCTTTAAATTTGCCATCGAATTCTGCTGAGCACGATATTCCCTCATCTCTTTTGTCACCGCCGCTAATGCCACCGATCACTAGACCTATAGTTCCTCATCACCCGTTTACATTCCCTTCTCCATTTAGGAAGACTTTTAGACACACATGGTTGCCACCACCATCGCCACCGGCGCAACAAGAATTGGAGAGGCCAATAGTTCCTTATTTTCCCTATAAATTTCCACCACCTCCATCAAGAAAACAGGCCAATCCTCCTCCGAGCTACCATGCCTTTCCCCCACCAGCCTTACTGCTCCTACCCAGAAAACTTTACATGTCTGAGGTCAGGAGGGCGACGCCTCCACCACCGCCTATAAAGCCATATCAGTGGCCAAAAGGGAAGATCCGTAAATCACCCCCACCTCCTTTCTAA

Protein sequence

MESRNPIFVFFLFIIMSLLSLNLPSNSAEHDIPSSLLSPPLMPPITRPIVPHHPFTFPSPFRKTFRHTWLPPPSPPAQQELERPIVPYFPYKFPPPPSRKQANPPPSYHAFPPPALLLLPRKLYMSEVRRATPPPPPIKPYQWPKGKIRKSPPPPF*

Homology

[Close]

BLAST of CsGy6G017445 vs. NCBI nr
Match: KAE8647164.1 (hypothetical protein Csa_018816, partial [Cucumis sativus] >KGN47688.2 hypothetical protein Csa_018930, partial [Cucumis sativus])

HSP 1 Score: 266 bits (681), Expect = 1.78e-89
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 16  MSLLSLNLPSNSAEHDIPSSLLSPPLMPPITRPIVPHHPFTFPSPFRKTFRHTWLPPPSP 75
           MSLLSLNLPSNSAEHDIPSSLLSPPLMPPITRPIVPHHPFTFPSPFRKTFRHTWLPPPSP
Sbjct: 1   MSLLSLNLPSNSAEHDIPSSLLSPPLMPPITRPIVPHHPFTFPSPFRKTFRHTWLPPPSP 60

Query: 76  PAQQELERPIVPYFPYKFPPPPSRKQANPPPSYHAFPPPALLLLPRKLYMSEVRRATPPP 135
           PAQQELERPIVPYFPYKFPPPPSRKQANPPPSYHAFPPPALLLL RKLYMSEVRRATPPP
Sbjct: 61  PAQQELERPIVPYFPYKFPPPPSRKQANPPPSYHAFPPPALLLLARKLYMSEVRRATPPP 120

Query: 136 PPIKPYQWPKGKI 148
           PPIKPYQWPKGKI
Sbjct: 121 PPIKPYQWPKGKI 133

[Close]

BLAST of CsGy6G017445 vs. NCBI nr
Match: XP_008466986.1 (PREDICTED: extensin-3-like, partial [Cucumis melo])

HSP 1 Score: 194 bits (493), Expect = 6.53e-61
Identity = 104/128 (81.25%), Postives = 110/128 (85.94%), Query Frame = 0


Query: 1   MESRNPIFVFFLFIIMSLLSLNLPSNSAEHDIPSSLLSPPLMPPITRPIVPHHPFTFPSP 60
           MES NPIFVFFLFII+ LLSLNLPSN A H IPSSLLSPP MP ITRPIVP+HPF FP P
Sbjct: 1   MESHNPIFVFFLFIILPLLSLNLPSNFAAHYIPSSLLSPPPMPSITRPIVPYHPFIFPPP 60

Query: 61  FRKTFR-HTWLPPPSPPAQQELERPIVPYFPYKFPPPPSRKQANPPPSYHAFPPPALLLL 120
           F+K FR HTWLPPP PP QQ+LERPIVPY+PYKFPPPPSRKQANPP SYHAFPPP L L 
Sbjct: 61  FKKAFRRHTWLPPPLPP-QQKLERPIVPYYPYKFPPPPSRKQANPPLSYHAFPPPTLPLP 120

Query: 121 PRKLYMSE 127
            +KLYMSE
Sbjct: 121 AKKLYMSE 127

[Close]

BLAST of CsGy6G017445 vs. NCBI nr
Match: KAA0058948.1 (extensin-3-like [Cucumis melo var. makuwa] >TYK15370.1 extensin-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 174 bits (441), Expect = 3.33e-53
Identity = 89/108 (82.41%), Postives = 94/108 (87.04%), Query Frame = 0


Query: 42  MPPITRPIVPHHPFTFPSPFRKTFR-HTWLPPPSPPAQQELERPIVPYFPYKFPPPPSRK 101
           MP ITRPIVP+HPF FP PF+K FR HTWLPPP PP QQ+LERPIVPY+PYKFPPPPSRK
Sbjct: 1   MPSITRPIVPYHPFIFPPPFKKAFRRHTWLPPPLPP-QQKLERPIVPYYPYKFPPPPSRK 60

Query: 102 QANPPPSYHAFPPPALLLLPRKLYMSEVRRATPPPPPIKPYQWPKGKI 148
           QANPP SYHAFPPP L L  +KLYMSEVRRA PPPPP KPYQWPKGKI
Sbjct: 61  QANPPLSYHAFPPPTLPLPAKKLYMSEVRRAAPPPPPKKPYQWPKGKI 107

[Close]

BLAST of CsGy6G017445 vs. NCBI nr
Match: KAA0058946.1 (extensin-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 144 bits (362), Expect = 1.76e-38
Identity = 78/122 (63.93%), Postives = 88/122 (72.13%), Query Frame = 0


Query: 16  MSLLSLNLPSNSAEHDIPSSLLSPPLMPPITRPIVPHHPFTFPSPFRKTFRHTWLPPPSP 75
           M LLS NLPSN A H IP SLLSPP MPP T+PIVP+HPF  P PF+KT +HTW P   P
Sbjct: 1   MPLLSSNLPSNFATHYIPPSLLSPPSMPPTTKPIVPYHPFIIPPPFKKTSKHTWSPSSRP 60

Query: 76  PAQQELERPIVPYFPYKFPPPPSRKQANPPPSYHAFPPPALLLLPRKLYMSEVRRATPPP 135
             Q+EL RPIVPY+PYKF PPP RK A+PPP YH FPP  L    +KL+MS  R+A P P
Sbjct: 61  --QKELGRPIVPYYPYKFLPPPYRKHAHPPPGYHVFPPRTLPQQAKKLHMSGARQAAPAP 120

Query: 136 PP 137
           PP
Sbjct: 121 PP 120

[Close]

BLAST of CsGy6G017445 vs. NCBI nr
Match: TYK10982.1 (extensin-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 144 bits (362), Expect = 1.01e-37
Identity = 78/122 (63.93%), Postives = 88/122 (72.13%), Query Frame = 0


Query: 16  MSLLSLNLPSNSAEHDIPSSLLSPPLMPPITRPIVPHHPFTFPSPFRKTFRHTWLPPPSP 75
           M LLS NLPSN A H IP SLLSPP MPP T+PIVP+HPF  P PF+KT +HTW P   P
Sbjct: 1   MPLLSSNLPSNFATHYIPPSLLSPPSMPPTTKPIVPYHPFIIPPPFKKTSKHTWSPSSRP 60

Query: 76  PAQQELERPIVPYFPYKFPPPPSRKQANPPPSYHAFPPPALLLLPRKLYMSEVRRATPPP 135
             Q+EL RPIVPY+PYKF PPP RK A+PPP YH FPP  L    +KL+MS  R+A P P
Sbjct: 61  --QKELGRPIVPYYPYKFLPPPYRKHAHPPPGYHVFPPRTLPQQAKKLHMSGARQAAPAP 120

Query: 136 PP 137
           PP
Sbjct: 121 PP 120

[Close]

BLAST of CsGy6G017445 vs. ExPASy TrEMBL
Match: A0A0A0KD80 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G337020 PE=4 SV=1)

HSP 1 Score: 309 bits (791), Expect = 3.18e-106
Identity = 155/156 (99.36%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 1   MESRNPIFVFFLFIIMSLLSLNLPSNSAEHDIPSSLLSPPLMPPITRPIVPHHPFTFPSP 60
           MESRNPIFVFFLFIIMSLLSLNLPSNSAEHDIPSSLLSPPLMPPITRPIVPHHPFTFPSP
Sbjct: 1   MESRNPIFVFFLFIIMSLLSLNLPSNSAEHDIPSSLLSPPLMPPITRPIVPHHPFTFPSP 60

Query: 61  FRKTFRHTWLPPPSPPAQQELERPIVPYFPYKFPPPPSRKQANPPPSYHAFPPPALLLLP 120
           FRKTFRHTWLPPPSPPAQQELERPIVPYFPYKFPPPPSRKQANPPPSYHAFPPPALLLL 
Sbjct: 61  FRKTFRHTWLPPPSPPAQQELERPIVPYFPYKFPPPPSRKQANPPPSYHAFPPPALLLLA 120

Query: 121 RKLYMSEVRRATPPPPPIKPYQWPKGKIRKSPPPPF 156
           RKLYMSEVRRATPPPPPIKPYQWPKGKIRKSPPPPF
Sbjct: 121 RKLYMSEVRRATPPPPPIKPYQWPKGKIRKSPPPPF 156

[Close]

BLAST of CsGy6G017445 vs. ExPASy TrEMBL
Match: A0A1S3CSG8 (extensin-3-like OS=Cucumis melo OX=3656 GN=LOC103504386 PE=4 SV=1)

HSP 1 Score: 194 bits (493), Expect = 3.16e-61
Identity = 104/128 (81.25%), Postives = 110/128 (85.94%), Query Frame = 0


Query: 1   MESRNPIFVFFLFIIMSLLSLNLPSNSAEHDIPSSLLSPPLMPPITRPIVPHHPFTFPSP 60
           MES NPIFVFFLFII+ LLSLNLPSN A H IPSSLLSPP MP ITRPIVP+HPF FP P
Sbjct: 1   MESHNPIFVFFLFIILPLLSLNLPSNFAAHYIPSSLLSPPPMPSITRPIVPYHPFIFPPP 60

Query: 61  FRKTFR-HTWLPPPSPPAQQELERPIVPYFPYKFPPPPSRKQANPPPSYHAFPPPALLLL 120
           F+K FR HTWLPPP PP QQ+LERPIVPY+PYKFPPPPSRKQANPP SYHAFPPP L L 
Sbjct: 61  FKKAFRRHTWLPPPLPP-QQKLERPIVPYYPYKFPPPPSRKQANPPLSYHAFPPPTLPLP 120

Query: 121 PRKLYMSE 127
            +KLYMSE
Sbjct: 121 AKKLYMSE 127

[Close]

BLAST of CsGy6G017445 vs. ExPASy TrEMBL
Match: A0A5D3CVI1 (Extensin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold20002G00010 PE=4 SV=1)

HSP 1 Score: 174 bits (441), Expect = 1.61e-53
Identity = 89/108 (82.41%), Postives = 94/108 (87.04%), Query Frame = 0


Query: 42  MPPITRPIVPHHPFTFPSPFRKTFR-HTWLPPPSPPAQQELERPIVPYFPYKFPPPPSRK 101
           MP ITRPIVP+HPF FP PF+K FR HTWLPPP PP QQ+LERPIVPY+PYKFPPPPSRK
Sbjct: 1   MPSITRPIVPYHPFIFPPPFKKAFRRHTWLPPPLPP-QQKLERPIVPYYPYKFPPPPSRK 60

Query: 102 QANPPPSYHAFPPPALLLLPRKLYMSEVRRATPPPPPIKPYQWPKGKI 148
           QANPP SYHAFPPP L L  +KLYMSEVRRA PPPPP KPYQWPKGKI
Sbjct: 61  QANPPLSYHAFPPPTLPLPAKKLYMSEVRRAAPPPPPKKPYQWPKGKI 107

[Close]

BLAST of CsGy6G017445 vs. ExPASy TrEMBL
Match: A0A5A7UXN4 (Extensin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G001280 PE=4 SV=1)

HSP 1 Score: 144 bits (362), Expect = 8.52e-39
Identity = 78/122 (63.93%), Postives = 88/122 (72.13%), Query Frame = 0


Query: 16  MSLLSLNLPSNSAEHDIPSSLLSPPLMPPITRPIVPHHPFTFPSPFRKTFRHTWLPPPSP 75
           M LLS NLPSN A H IP SLLSPP MPP T+PIVP+HPF  P PF+KT +HTW P   P
Sbjct: 1   MPLLSSNLPSNFATHYIPPSLLSPPSMPPTTKPIVPYHPFIIPPPFKKTSKHTWSPSSRP 60

Query: 76  PAQQELERPIVPYFPYKFPPPPSRKQANPPPSYHAFPPPALLLLPRKLYMSEVRRATPPP 135
             Q+EL RPIVPY+PYKF PPP RK A+PPP YH FPP  L    +KL+MS  R+A P P
Sbjct: 61  --QKELGRPIVPYYPYKFLPPPYRKHAHPPPGYHVFPPRTLPQQAKKLHMSGARQAAPAP 120

Query: 136 PP 137
           PP
Sbjct: 121 PP 120

[Close]

BLAST of CsGy6G017445 vs. ExPASy TrEMBL
Match: A0A5D3CI60 (Extensin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold874G00140 PE=4 SV=1)

HSP 1 Score: 144 bits (362), Expect = 4.87e-38
Identity = 78/122 (63.93%), Postives = 88/122 (72.13%), Query Frame = 0


Query: 16  MSLLSLNLPSNSAEHDIPSSLLSPPLMPPITRPIVPHHPFTFPSPFRKTFRHTWLPPPSP 75
           M LLS NLPSN A H IP SLLSPP MPP T+PIVP+HPF  P PF+KT +HTW P   P
Sbjct: 1   MPLLSSNLPSNFATHYIPPSLLSPPSMPPTTKPIVPYHPFIIPPPFKKTSKHTWSPSSRP 60

Query: 76  PAQQELERPIVPYFPYKFPPPPSRKQANPPPSYHAFPPPALLLLPRKLYMSEVRRATPPP 135
             Q+EL RPIVPY+PYKF PPP RK A+PPP YH FPP  L    +KL+MS  R+A P P
Sbjct: 61  --QKELGRPIVPYYPYKFLPPPYRKHAHPPPGYHVFPPRTLPQQAKKLHMSGARQAAPAP 120

Query: 136 PP 137
           PP
Sbjct: 121 PP 120

The following BLAST results are available for this feature:

BLAST of CsGy6G017445 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy6G017445 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647164.1	1.78e-89	99.25	hypothetical protein Csa_018816, partial [Cucumis sativus] >KGN47688.2 hypotheti...	[more]
XP_008466986.1	6.53e-61	81.25	PREDICTED: extensin-3-like, partial [Cucumis melo]	[more]
KAA0058948.1	3.33e-53	82.41	extensin-3-like [Cucumis melo var. makuwa] >TYK15370.1 extensin-3-like [Cucumis ...	[more]
KAA0058946.1	1.76e-38	63.93	extensin-3-like [Cucumis melo var. makuwa]	[more]
TYK10982.1	1.01e-37	63.93	extensin-3-like [Cucumis melo var. makuwa]	[more]

BLAST of CsGy6G017445 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KD80	3.18e-106	99.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G337020 PE=4 SV=1	[more]
A0A1S3CSG8	3.16e-61	81.25	extensin-3-like OS=Cucumis melo OX=3656 GN=LOC103504386 PE=4 SV=1	[more]
A0A5D3CVI1	1.61e-53	82.41	Extensin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold20002G00...	[more]
A0A5A7UXN4	8.52e-39	63.93	Extensin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G00128...	[more]
A0A5D3CI60	4.87e-38	63.93	Extensin-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold874G0014...	[more]

BLAST of CsGy6G017445 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..156
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G017445.1	CsGy6G017445.1	mRNA