CsGy6G017438 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy6G017438
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionGag-pro-like protein
LocationGy14Chr6: 18162022 .. 18162418 (-)
RNA-Seq ExpressionCsGy6G017438
SyntenyCsGy6G017438
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGAGGAAGATTTTCTGATAACAAAACCGATATCAACCCCATATGTGGAGGCAACAGAAGAAGCTTTAGAGTGTTCTTTTCGCTCTTTTGAAATTGCTCATGCAACTATGATGGAAGCAACTGCAGGTGAAGTAATAAAGTCACACATGCCTAAAGTTACGACAAAAAGGATGATGAGAAGTGGAGGATATGGTTTGAATCAAAGCTTGGAAACACTTCTAAATACACCAAGCAATGAAGGGAGATTTGGTTTGGGTTATATGCCAAACGTATATGATAAAATTAGGCTTCAAAAAGAAAAGAAGAAAAGGTGTTTGGAAAAGCAAGGGATGATGGTGTTTGATCCAAGTCTAAAATTTATACCAGCATTATATGATACTTTCAAGAGTGCTG

mRNA sequence

ATGGGAGAGGAAGATTTTCTGATAACAAAACCGATATCAACCCCATATGTGGAGGCAACAGAAGAAGCTTTAGAGTGTTCTTTTCGCTCTTTTGAAATTGCTCATGCAACTATGATGGAAGCAACTGCAGGTGAAGTAATAAAGTCACACATGCCTAAAGTTACGACAAAAAGGATGATGAGAAGTGGAGGATATGGTTTGAATCAAAGCTTGGAAACACTTCTAAATACACCAAGCAATGAAGGGAGATTTGGTTTGGGTTATATGCCAAACGTATATGATAAAATTAGGCTTCAAAAAGAAAAGAAGAAAAGGTGTTTGGAAAAGCAAGGGATGATGGTGTTTGATCCAAGTCTAAAATTTATACCAGCATTATATGATACTTTCAAGAGTGCTG

Coding sequence (CDS)

ATGGGAGAGGAAGATTTTCTGATAACAAAACCGATATCAACCCCATATGTGGAGGCAACAGAAGAAGCTTTAGAGTGTTCTTTTCGCTCTTTTGAAATTGCTCATGCAACTATGATGGAAGCAACTGCAGGTGAAGTAATAAAGTCACACATGCCTAAAGTTACGACAAAAAGGATGATGAGAAGTGGAGGATATGGTTTGAATCAAAGCTTGGAAACACTTCTAAATACACCAAGCAATGAAGGGAGATTTGGTTTGGGTTATATGCCAAACGTATATGATAAAATTAGGCTTCAAAAAGAAAAGAAGAAAAGGTGTTTGGAAAAGCAAGGGATGATGGTGTTTGATCCAAGTCTAAAATTTATACCAGCATTATATGATACTTTCAAGAGTGCTG

Protein sequence

MGEEDFLITKPISTPYVEATEEALECSFRSFEIAHATMMEATAGEVIKSHMPKVTTKRMMRSGGYGLNQSLETLLNTPSNEGRFGLGYMPNVYDKIRLQKEKKKRCLEKQGMMVFDPSLKFIPALYDTFKSAX
Homology
BLAST of CsGy6G017438 vs. NCBI nr
Match: KAE8648202.1 (hypothetical protein Csa_018419, partial [Cucumis sativus] >KAE8649580.1 hypothetical protein Csa_021558, partial [Cucumis sativus])

HSP 1 Score: 268 bits (684), Expect = 2.26e-90
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0

Query: 1   MGEEDFLITKPISTPYVEATEEALECSFRSFEIAHATMMEATAGEVIKSHMPKVTTKRMM 60
           MGEEDFLITKPISTPYVEATEEALECSFRSFEIAHATMMEATAGEVIKSHMPKVTTKRMM
Sbjct: 1   MGEEDFLITKPISTPYVEATEEALECSFRSFEIAHATMMEATAGEVIKSHMPKVTTKRMM 60

Query: 61  RSGGYGLNQSLETLLNTPSNEGRFGLGYMPNVYDKIRLQKEKKKRCLEKQGMMVFDPSLK 120
           RSGGYGLNQSLETLLNTPSNEGRFGLGYMPNVYDKIRLQKEKKKRCLEKQGMMVFDPSLK
Sbjct: 61  RSGGYGLNQSLETLLNTPSNEGRFGLGYMPNVYDKIRLQKEKKKRCLEKQGMMVFDPSLK 120

Query: 121 FIPALYDTFKSA 132
           FIPALYDTFKSA
Sbjct: 121 FIPALYDTFKSA 132

BLAST of CsGy6G017438 vs. NCBI nr
Match: XP_031737546.1 (uncharacterized protein LOC116402435 [Cucumis sativus])

HSP 1 Score: 266 bits (681), Expect = 9.89e-82
Identity = 131/132 (99.24%), Postives = 132/132 (100.00%), Query Frame = 0

Query: 1   MGEEDFLITKPISTPYVEATEEALECSFRSFEIAHATMMEATAGEVIKSHMPKVTTKRMM 60
           MGEEDFLITKPISTPYVEATEEALECSFRSFEIAHATMMEATAGEVIKSHMPKVTTKRMM
Sbjct: 652 MGEEDFLITKPISTPYVEATEEALECSFRSFEIAHATMMEATAGEVIKSHMPKVTTKRMM 711

Query: 61  RSGGYGLNQSLETLLNTPSNEGRFGLGYMPNVYDKIRLQKEKKKRCLEKQGMMVFDPSLK 120
           RSGGYGLNQSLETLLNTPSNEGRFGLGYMPNVYDKIRLQKEKKK+CLEKQGMMVFDPSLK
Sbjct: 712 RSGGYGLNQSLETLLNTPSNEGRFGLGYMPNVYDKIRLQKEKKKKCLEKQGMMVFDPSLK 771

Query: 121 FIPALYDTFKSA 132
           FIPALYDTFKSA
Sbjct: 772 FIPALYDTFKSA 783

BLAST of CsGy6G017438 vs. NCBI nr
Match: XP_031742474.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC116404360 [Cucumis sativus])

HSP 1 Score: 268 bits (684), Expect = 4.17e-80
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0

Query: 1   MGEEDFLITKPISTPYVEATEEALECSFRSFEIAHATMMEATAGEVIKSHMPKVTTKRMM 60
           MGEEDFLITKPISTPYVEATEEALECSFRSFEIAHATMMEATAGEVIKSHMPKVTTKRMM
Sbjct: 726 MGEEDFLITKPISTPYVEATEEALECSFRSFEIAHATMMEATAGEVIKSHMPKVTTKRMM 785

Query: 61  RSGGYGLNQSLETLLNTPSNEGRFGLGYMPNVYDKIRLQKEKKKRCLEKQGMMVFDPSLK 120
           RSGGYGLNQSLETLLNTPSNEGRFGLGYMPNVYDKIRLQKEKKKRCLEKQGMMVFDPSLK
Sbjct: 786 RSGGYGLNQSLETLLNTPSNEGRFGLGYMPNVYDKIRLQKEKKKRCLEKQGMMVFDPSLK 845

Query: 121 FIPALYDTFKSA 132
           FIPALYDTFKSA
Sbjct: 846 FIPALYDTFKSA 857

BLAST of CsGy6G017438 vs. NCBI nr
Match: XP_031742360.1 (uncharacterized protein LOC116404324 [Cucumis sativus])

HSP 1 Score: 268 bits (684), Expect = 4.18e-80
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0

Query: 1    MGEEDFLITKPISTPYVEATEEALECSFRSFEIAHATMMEATAGEVIKSHMPKVTTKRMM 60
            MGEEDFLITKPISTPYVEATEEALECSFRSFEIAHATMMEATAGEVIKSHMPKVTTKRMM
Sbjct: 956  MGEEDFLITKPISTPYVEATEEALECSFRSFEIAHATMMEATAGEVIKSHMPKVTTKRMM 1015

Query: 61   RSGGYGLNQSLETLLNTPSNEGRFGLGYMPNVYDKIRLQKEKKKRCLEKQGMMVFDPSLK 120
            RSGGYGLNQSLETLLNTPSNEGRFGLGYMPNVYDKIRLQKEKKKRCLEKQGMMVFDPSLK
Sbjct: 1016 RSGGYGLNQSLETLLNTPSNEGRFGLGYMPNVYDKIRLQKEKKKRCLEKQGMMVFDPSLK 1075

Query: 121  FIPALYDTFKSA 132
            FIPALYDTFKSA
Sbjct: 1076 FIPALYDTFKSA 1087

BLAST of CsGy6G017438 vs. NCBI nr
Match: XP_031740016.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC116403346 [Cucumis sativus])

HSP 1 Score: 268 bits (684), Expect = 4.18e-80
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0

Query: 1    MGEEDFLITKPISTPYVEATEEALECSFRSFEIAHATMMEATAGEVIKSHMPKVTTKRMM 60
            MGEEDFLITKPISTPYVEATEEALECSFRSFEIAHATMMEATAGEVIKSHMPKVTTKRMM
Sbjct: 879  MGEEDFLITKPISTPYVEATEEALECSFRSFEIAHATMMEATAGEVIKSHMPKVTTKRMM 938

Query: 61   RSGGYGLNQSLETLLNTPSNEGRFGLGYMPNVYDKIRLQKEKKKRCLEKQGMMVFDPSLK 120
            RSGGYGLNQSLETLLNTPSNEGRFGLGYMPNVYDKIRLQKEKKKRCLEKQGMMVFDPSLK
Sbjct: 939  RSGGYGLNQSLETLLNTPSNEGRFGLGYMPNVYDKIRLQKEKKKRCLEKQGMMVFDPSLK 998

Query: 121  FIPALYDTFKSA 132
            FIPALYDTFKSA
Sbjct: 999  FIPALYDTFKSA 1010

BLAST of CsGy6G017438 vs. ExPASy TrEMBL
Match: A0A5D3DVI7 (Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1784G00180 PE=4 SV=1)

HSP 1 Score: 195 bits (495), Expect = 1.28e-60
Identity = 98/134 (73.13%), Postives = 109/134 (81.34%), Query Frame = 0

Query: 1   MGEEDFLITKPISTPYVEATEEALECSFRSFEIAHATMMEATAGEVIKSHMPKVT--TKR 60
           MGEEDFLITKP+STPYVEATEEALECSFRS EIAHATMMEA   EVIK H  KV   T R
Sbjct: 1   MGEEDFLITKPVSTPYVEATEEALECSFRSSEIAHATMMEAIVDEVIKPHKSKVEVMTTR 60

Query: 61  MMRSGGYGLNQSLETLLNTPSNEGRFGLGYMPNVYDKIRLQKEKKKRCLEKQGMMVFDPS 120
           +M  GGY LN++LETLL T SN+G+FGLGY P++YDKIRLQ+EKKK+CL K  M  FDPS
Sbjct: 61  IMGGGGYSLNKNLETLLKTSSNDGKFGLGYKPSIYDKIRLQEEKKKKCLAKLEMREFDPS 120

Query: 121 LKFIPALYDTFKSA 132
           +K IP LYD FKSA
Sbjct: 121 IKLIPELYDIFKSA 134

BLAST of CsGy6G017438 vs. ExPASy TrEMBL
Match: A0A5D3DA63 (Protein NYNRIN-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G00300 PE=4 SV=1)

HSP 1 Score: 199 bits (506), Expect = 1.11e-59
Identity = 101/134 (75.37%), Postives = 110/134 (82.09%), Query Frame = 0

Query: 1   MGEEDFLITKPISTPYVEATEEALECSFRSFEIAHATMMEATAGEVIKSHMPKVT--TKR 60
           MGEEDFLITKP+STPYVEATEEALECSFRSFEIAHATMMEAT  EVIK H  KV   T R
Sbjct: 1   MGEEDFLITKPVSTPYVEATEEALECSFRSFEIAHATMMEATVDEVIKPHKSKVEVMTTR 60

Query: 61  MMRSGGYGLNQSLETLLNTPSNEGRFGLGYMPNVYDKIRLQKEKKKRCLEKQGMMVFDPS 120
           +M  GGY LNQ+LETLL  PSN+GRFGLGY P++YDKIRLQ+EKKK+ L K  M  FDPS
Sbjct: 61  IMGGGGYSLNQNLETLLKIPSNDGRFGLGYKPSIYDKIRLQEEKKKKRLTKLEMREFDPS 120

Query: 121 LKFIPALYDTFKSA 132
           +K IP LYD FKSA
Sbjct: 121 IKLIPELYDIFKSA 134

BLAST of CsGy6G017438 vs. ExPASy TrEMBL
Match: A0A5A7TNR9 (Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G003240 PE=4 SV=1)

HSP 1 Score: 191 bits (485), Expect = 1.24e-59
Identity = 98/134 (73.13%), Postives = 109/134 (81.34%), Query Frame = 0

Query: 1   MGEEDFLITKPISTPYVEATEEALECSFRSFEIAHATMMEATAGEVIKSHMPKVT--TKR 60
           MGEEDFLITK +STPYVEATEEALECSFRSFEIAHATMMEAT  EVIK H  KV   T R
Sbjct: 1   MGEEDFLITKLVSTPYVEATEEALECSFRSFEIAHATMMEATVDEVIKPHKSKVEVMTTR 60

Query: 61  MMRSGGYGLNQSLETLLNTPSNEGRFGLGYMPNVYDKIRLQKEKKKRCLEKQGMMVFDPS 120
           ++  GGY LNQ+LETLL TPSN+GRFGLGY P++YDKIRLQ+EKKK+ L K  M  FDPS
Sbjct: 61  IIGGGGYSLNQNLETLLKTPSNDGRFGLGYKPSIYDKIRLQEEKKKKRLTKLEMREFDPS 120

Query: 121 LKFIPALYDTFKSA 132
           +K I  LYD FKS+
Sbjct: 121 IKLILELYDIFKSS 134

BLAST of CsGy6G017438 vs. ExPASy TrEMBL
Match: A0A5D3CRD2 (Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00040 PE=4 SV=1)

HSP 1 Score: 190 bits (483), Expect = 2.49e-59
Identity = 98/134 (73.13%), Postives = 108/134 (80.60%), Query Frame = 0

Query: 1   MGEEDFLITKPISTPYVEATEEALECSFRSFEIAHATMMEATAGEVIKSHMPKVT--TKR 60
           MGEEDFLITK +STPYVEATEEALECSFRSFEIAHATMMEAT  EVIK H  KV   T R
Sbjct: 1   MGEEDFLITKLVSTPYVEATEEALECSFRSFEIAHATMMEATVDEVIKPHKSKVEVMTTR 60

Query: 61  MMRSGGYGLNQSLETLLNTPSNEGRFGLGYMPNVYDKIRLQKEKKKRCLEKQGMMVFDPS 120
           +M  GGY L+Q+LETLL T SN+GRFGLGY P++YDKIRLQ++KKK  L K  M  FDPS
Sbjct: 61  IMGGGGYSLDQNLETLLKTSSNDGRFGLGYKPSIYDKIRLQEKKKKNRLAKLEMREFDPS 120

Query: 121 LKFIPALYDTFKSA 132
           +K IP LYD FKSA
Sbjct: 121 IKLIPELYDIFKSA 134

BLAST of CsGy6G017438 vs. ExPASy TrEMBL
Match: A0A5A7V7W3 (Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G002750 PE=4 SV=1)

HSP 1 Score: 191 bits (484), Expect = 2.92e-59
Identity = 98/134 (73.13%), Postives = 108/134 (80.60%), Query Frame = 0

Query: 1   MGEEDFLITKPISTPYVEATEEALECSFRSFEIAHATMMEATAGEVIKSHMPKVT--TKR 60
           MGEEDFLITK +STPYVEATEEAL+CSFRSFEIAHATMMEAT  EVIK H  KV   T R
Sbjct: 2   MGEEDFLITKSVSTPYVEATEEALQCSFRSFEIAHATMMEATVDEVIKPHKSKVEVMTTR 61

Query: 61  MMRSGGYGLNQSLETLLNTPSNEGRFGLGYMPNVYDKIRLQKEKKKRCLEKQGMMVFDPS 120
           +M  GGY LNQ+LETLL TPSN+GRFGLGY  ++YDKIRLQ+EKKK+ L K  M  FDPS
Sbjct: 62  IMMGGGYSLNQNLETLLKTPSNDGRFGLGYKSSIYDKIRLQEEKKKKRLAKLEMREFDPS 121

Query: 121 LKFIPALYDTFKSA 132
           +K I  LYD FKSA
Sbjct: 122 IKLILQLYDIFKSA 135

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAE8648202.12.26e-90100.00hypothetical protein Csa_018419, partial [Cucumis sativus] >KAE8649580.1 hypothe... [more]
XP_031737546.19.89e-8299.24uncharacterized protein LOC116402435 [Cucumis sativus][more]
XP_031742474.14.17e-80100.00LOW QUALITY PROTEIN: uncharacterized protein LOC116404360 [Cucumis sativus][more]
XP_031742360.14.18e-80100.00uncharacterized protein LOC116404324 [Cucumis sativus][more]
XP_031740016.14.18e-80100.00LOW QUALITY PROTEIN: uncharacterized protein LOC116403346 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A5D3DVI71.28e-6073.13Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold178... [more]
A0A5D3DA631.11e-5975.37Protein NYNRIN-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G... [more]
A0A5A7TNR91.24e-5973.13Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G... [more]
A0A5D3CRD22.49e-5973.13Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488... [more]
A0A5A7V7W32.92e-5973.13Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 2..98
NoneNo IPR availablePANTHERPTHR24559:SF322RNA-DIRECTED DNA POLYMERASE (REVERSE TRANSCRIPTASE), RIBONUCLEASE H-LIKE PROTEINcoord: 2..98

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy6G017438.1CsGy6G017438.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups