CsGy6G017255 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy6G017255
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionUnknown protein
LocationGy14Chr6: 17936337 .. 17936564 (-)
RNA-Seq ExpressionCsGy6G017255
SyntenyCsGy6G017255
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACCAAGCTTTGACTACACCGCCAACCTCTCCCCCTCCGTGCCGCCGCCCATGGCGGTGCCAAATTCTCGCCCCTGGAAGAAACTCCGGGCTGCAGCTTCCGCTAAATCATAAACCAATTTCATCTCGAATTCACGCCGAAGACAAACTTCAACTTCAAGTTTTCTGTAGCGGTGATCTTCGGCGTTTGCAGCGTTTTCTCTCGAATCGGTTTCACTCTCAGTAA

mRNA sequence

ATGAACCAAGCTTTGACTACACCGCCAACCTCTCCCCCTCCGTGCCGCCGCCCATGGCGGTGCCAAATTCTCGCCCCTGGAAGAAACTCCGGGCTGCAGCTTCCGCTAAATCATAAACCAATTTCATCTCGAATTCACGCCGAAGACAAACTTCAACTTCAAGTTTTCTGTAGCGGTGATCTTCGGCGTTTGCAGCGTTTTCTCTCGAATCGGTTTCACTCTCAGTAA

Coding sequence (CDS)

ATGAACCAAGCTTTGACTACACCGCCAACCTCTCCCCCTCCGTGCCGCCGCCCATGGCGGTGCCAAATTCTCGCCCCTGGAAGAAACTCCGGGCTGCAGCTTCCGCTAAATCATAAACCAATTTCATCTCGAATTCACGCCGAAGACAAACTTCAACTTCAAGTTTTCTGTAGCGGTGATCTTCGGCGTTTGCAGCGTTTTCTCTCGAATCGGTTTCACTCTCAGTAA

Protein sequence

MNQALTTPPTSPPPCRRPWRCQILAPGRNSGLQLPLNHKPISSRIHAEDKLQLQVFCSGDLRRLQRFLSNRFHSQ*
Homology
BLAST of CsGy6G017255 vs. NCBI nr
Match: KAE8637115.1 (hypothetical protein CSA_004592 [Cucumis sativus])

HSP 1 Score: 86.3 bits (212), Expect = 3.49e-20
Identity = 52/82 (63.41%), Postives = 54/82 (65.85%), Query Frame = 0

Query: 1  MNQALTT---PPTSPPPCR----RPWRCQILAPGRNSGLQLPLNHKPISSRIHAEDKLQL 60
          MNQALTT    P+ PPP      RPW+    A    S        KP SSRIHAEDKLQL
Sbjct: 1  MNQALTTRQRSPSVPPPMAVPNSRPWKKLRAAASAKS--------KPNSSRIHAEDKLQL 60

Query: 61 QVFCSGDLRRLQRFLSNRFHSQ 75
          QVFCSGDLRRLQRFLSNRFHSQ
Sbjct: 61 QVFCSGDLRRLQRFLSNRFHSQ 74

BLAST of CsGy6G017255 vs. NCBI nr
Match: KAE8647153.1 (hypothetical protein Csa_021764, partial [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 4.07e-16
Identity = 41/61 (67.21%), Postives = 42/61 (68.85%), Query Frame = 0

Query: 14 PCRRPWRCQILAPGRNSGLQLPLNHKPISSRIHAEDKLQLQVFCSGDLRRLQRFLSNRFH 73
          P  RPW+    A    S        KP SSRIHAEDKLQLQVFCSGDLRRLQRFLSNRFH
Sbjct: 4  PNSRPWKKLRAAASAKS--------KPNSSRIHAEDKLQLQVFCSGDLRRLQRFLSNRFH 56

BLAST of CsGy6G017255 vs. ExPASy TrEMBL
Match: A0A0A0KF56 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G326160 PE=4 SV=1)

HSP 1 Score: 157 bits (398), Expect = 7.31e-49
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 0

Query: 1  MNQALTTPPTSPPPCRRPWRCQILAPGRNSGLQLPLNHKPISSRIHAEDKLQLQVFCSGD 60
          MNQALTTPPTSPPPCRRPWRCQILAPGRNSGLQLPLNHKP SSRIHAEDKLQLQVFCSGD
Sbjct: 1  MNQALTTPPTSPPPCRRPWRCQILAPGRNSGLQLPLNHKPNSSRIHAEDKLQLQVFCSGD 60

Query: 61 LRRLQRFLSNRFHSQ 75
          LRRLQRFLSNRFHSQ
Sbjct: 61 LRRLQRFLSNRFHSQ 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAE8637115.13.49e-2063.41hypothetical protein CSA_004592 [Cucumis sativus][more]
KAE8647153.14.07e-1667.21hypothetical protein Csa_021764, partial [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A0A0KF567.31e-4998.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G326160 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy6G017255.1CsGy6G017255.1mRNA