CsGy6G017014 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G017014
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	NADH dehydrogenase subunit 7
Location	Gy14Chr6: 17554603 .. 17554791 (+)
RNA-Seq Expression	CsGy6G017014
Synteny	CsGy6G017014

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGACTAGGAACAGGCAAATCAAAAATTTCACTTCGAATTCCGGACCTCAACATCCTGCTGCTCATGGTGTTTCACGATCAGTATTGGAAATGAACGGAGAAGTGGTGGAACGTGCGGAACCCCATATTGGATTACTCCAGTGCGGCACGAAGTCGCTGACGCCGAGTCGGCTCCTATGCCGCTAG

mRNA sequence

ATGACGACTAGGAACAGGCAAATCAAAAATTTCACTTCGAATTCCGGACCTCAACATCCTGCTGCTCATGGTGTTTCACGATCAGTATTGGAAATGAACGGAGAAGTGGTGGAACGTGCGGAACCCCATATTGGATTACTCCAGTGCGGCACGAAGTCGCTGACGCCGAGTCGGCTCCTATGCCGCTAG

Coding sequence (CDS)

ATGACGACTAGGAACAGGCAAATCAAAAATTTCACTTCGAATTCCGGACCTCAACATCCTGCTGCTCATGGTGTTTCACGATCAGTATTGGAAATGAACGGAGAAGTGGTGGAACGTGCGGAACCCCATATTGGATTACTCCAGTGCGGCACGAAGTCGCTGACGCCGAGTCGGCTCCTATGCCGCTAG

Protein sequence

MTTRNRQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKSLTPSRLLCR*

Homology

[Close]

BLAST of CsGy6G017014 vs. ExPASy Swiss-Prot
Match: Q36450 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris OX=4096 GN=NAD7 PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 3.2e-21
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 0


Query: 1  MTTRNRQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKSL 55
          MTT+NRQIKNFTSN GPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQ GT+ L
Sbjct: 1  MTTKNRQIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQRGTEKL 54

[Close]

BLAST of CsGy6G017014 vs. ExPASy Swiss-Prot
Match: P93306 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Arabidopsis thaliana OX=3702 GN=NAD7 PE=1 SV=2)

HSP 1 Score: 91.7 bits (226), Expect = 3.3e-18
Identity = 45/54 (83.33%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1  MTTRNRQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKSL 55
          MTTR RQIKNFT N GPQHPAAHGV R VLEMNGEVVERAEPHIGLL  GT+ L
Sbjct: 1  MTTRKRQIKNFTLNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKL 54

[Close]

BLAST of CsGy6G017014 vs. ExPASy Swiss-Prot
Match: P80264 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 (Fragment) OS=Solanum tuberosum OX=4113 GN=NAD7 PE=1 SV=3)

HSP 1 Score: 85.9 bits (211), Expect = 1.8e-16
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1  MTTRNRQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLL 48
          MTT+NRQI+NFT N GPQHPAAHGV R VLEMNGEVVERAEPHIGLL
Sbjct: 1  MTTKNRQIQNFTLNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLL 47

[Close]

BLAST of CsGy6G017014 vs. ExPASy Swiss-Prot
Match: Q37720 (NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Pylaiella littoralis OX=2885 GN=NAD7 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 4.9e-14
Identity = 34/54 (62.96%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 5  NRQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKSLTPSR 59
          N+++K+FT N GPQHPAAHGV R +LE+NGEVV+RA+PHIGLL  GT+ L  ++
Sbjct: 9  NKKLKHFTINFGPQHPAAHGVLRLILELNGEVVQRADPHIGLLHRGTEKLIEAK 62

[Close]

BLAST of CsGy6G017014 vs. ExPASy Swiss-Prot
Match: A1B495 (NADH-quinone oxidoreductase subunit D OS=Paracoccus denitrificans (strain Pd 1222) OX=318586 GN=nuoD PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 6.4e-14
Identity = 36/56 (64.29%), Postives = 43/56 (76.79%), Query Frame = 0


Query: 3  TRNRQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKSLTPSR 59
          T  + I+NF  N GPQHPAAHGV R VLE++GE+VERA+PHIGLL  GT+ L  SR
Sbjct: 19 TGEQSIRNFNINFGPQHPAAHGVLRMVLELDGEIVERADPHIGLLHRGTEKLMESR 74

[Close]

BLAST of CsGy6G017014 vs. NCBI nr
Match: KAE8647102.1 (hypothetical protein Csa_021723 [Cucumis sativus] >KAE8647129.1 hypothetical protein Csa_021539 [Cucumis sativus])

HSP 1 Score: 127 bits (318), Expect = 9.92e-37
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 1  MTTRNRQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKSLTPSRLL 60
          MTTRNRQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTK LTPSRLL
Sbjct: 1  MTTRNRQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSRLL 60

Query: 61 CR 62
          CR
Sbjct: 61 CR 62

[Close]

BLAST of CsGy6G017014 vs. NCBI nr
Match: KAG6633581.1 (hypothetical protein CIPAW_12G057700 [Carya illinoinensis])

HSP 1 Score: 123 bits (308), Expect = 9.28e-35
Identity = 59/62 (95.16%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 1  MTTRNRQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKSLTPSRLL 60
          MTTRNRQIKNFTSN GPQHPAAHGVSRSVLEMNGEVVER EPHIGLLQCGTK LTPSRLL
Sbjct: 37 MTTRNRQIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERVEPHIGLLQCGTKPLTPSRLL 96

Query: 61 CR 62
          CR
Sbjct: 97 CR 98

[Close]

BLAST of CsGy6G017014 vs. NCBI nr
Match: OVA00940.1 (hypothetical protein BVC80_1251g6 [Macleaya cordata] >OVA10787.1 hypothetical protein BVC80_6489g3 [Macleaya cordata])

HSP 1 Score: 122 bits (305), Expect = 9.57e-35
Identity = 59/62 (95.16%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 1  MTTRNRQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKSLTPSRLL 60
          MTTRN QIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIG LQCGTK LTPSRLL
Sbjct: 1  MTTRNGQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGSLQCGTKPLTPSRLL 60

Query: 61 CR 62
          CR
Sbjct: 61 CR 62

[Close]

BLAST of CsGy6G017014 vs. NCBI nr
Match: GAY68549.1 (hypothetical protein CUMW_265030 [Citrus unshiu])

HSP 1 Score: 120 bits (301), Expect = 3.91e-34
Identity = 58/62 (93.55%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 1  MTTRNRQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKSLTPSRLL 60
          MTTRN QI+NFTSN GPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTK LTPSRLL
Sbjct: 1  MTTRNGQIQNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSRLL 60

Query: 61 CR 62
          CR
Sbjct: 61 CR 62

[Close]

BLAST of CsGy6G017014 vs. NCBI nr
Match: PUZ39252.1 (hypothetical protein GQ55_9G272100 [Panicum hallii var. hallii] >RLM65549.1 hypothetical protein C2845_PM16G00630 [Panicum miliaceum])

HSP 1 Score: 120 bits (301), Expect = 3.91e-34
Identity = 59/62 (95.16%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 1  MTTRNRQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKSLTPSRLL 60
          MTTRN QIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTK LT SRLL
Sbjct: 1  MTTRNGQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTLSRLL 60

Query: 61 CR 62
          CR
Sbjct: 61 CR 62

[Close]

BLAST of CsGy6G017014 vs. ExPASy TrEMBL
Match: A0A200QK65 (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_1251g6 PE=3 SV=1)

HSP 1 Score: 122 bits (305), Expect = 4.64e-35
Identity = 59/62 (95.16%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 1  MTTRNRQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKSLTPSRLL 60
          MTTRN QIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIG LQCGTK LTPSRLL
Sbjct: 1  MTTRNGQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGSLQCGTKPLTPSRLL 60

Query: 61 CR 62
          CR
Sbjct: 61 CR 62

[Close]

BLAST of CsGy6G017014 vs. ExPASy TrEMBL
Match: A0A6N2KZZ0 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS146020 PE=3 SV=1)

HSP 1 Score: 120 bits (302), Expect = 1.33e-34
Identity = 58/62 (93.55%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 1  MTTRNRQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKSLTPSRLL 60
          MTTRN QIKNFTSN GPQHPAAHGVSRSVLEMNGEVVERA+PHIGLLQCGTK LTPSRLL
Sbjct: 1  MTTRNGQIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERADPHIGLLQCGTKPLTPSRLL 60

Query: 61 CR 62
          CR
Sbjct: 61 CR 62

[Close]

BLAST of CsGy6G017014 vs. ExPASy TrEMBL
Match: A0A3L6PYF8 (NAD(P)H dehydrogenase subunit H OS=Panicum miliaceum OX=4540 GN=C2845_PM16G00630 PE=3 SV=1)

HSP 1 Score: 120 bits (301), Expect = 1.89e-34
Identity = 59/62 (95.16%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 1  MTTRNRQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKSLTPSRLL 60
          MTTRN QIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTK LT SRLL
Sbjct: 1  MTTRNGQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTLSRLL 60

Query: 61 CR 62
          CR
Sbjct: 61 CR 62

[Close]

BLAST of CsGy6G017014 vs. ExPASy TrEMBL
Match: A0A2T7C7E7 (NAD(P)H dehydrogenase subunit H OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G272100 PE=3 SV=1)

HSP 1 Score: 120 bits (301), Expect = 1.89e-34
Identity = 59/62 (95.16%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 1  MTTRNRQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKSLTPSRLL 60
          MTTRN QIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTK LT SRLL
Sbjct: 1  MTTRNGQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTLSRLL 60

Query: 61 CR 62
          CR
Sbjct: 61 CR 62

[Close]

BLAST of CsGy6G017014 vs. ExPASy TrEMBL
Match: A0A2H5QVE6 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_265030 PE=3 SV=1)

HSP 1 Score: 120 bits (301), Expect = 1.89e-34
Identity = 58/62 (93.55%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 1  MTTRNRQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKSLTPSRLL 60
          MTTRN QI+NFTSN GPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTK LTPSRLL
Sbjct: 1  MTTRNGQIQNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSRLL 60

Query: 61 CR 62
          CR
Sbjct: 61 CR 62

[Close]

BLAST of CsGy6G017014 vs. TAIR 10
Match: ATMG00510.1 (NADH dehydrogenase subunit 7 )

HSP 1 Score: 94.0 bits (232), Expect = 4.7e-20
Identity = 46/54 (85.19%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1  MTTRNRQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKSL 55
          MTTR RQIKNFTSN GPQHPAAHGVSR VLEMNGEVVERAEPHIG L  GT+ L
Sbjct: 1  MTTRKRQIKNFTSNFGPQHPAAHGVSRLVLEMNGEVVERAEPHIGSLHRGTEKL 54

The following BLAST results are available for this feature:

BLAST of CsGy6G017014 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q36450	3.2e-21	90.74	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris OX...	[more]
P93306	3.3e-18	83.33	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Arabidopsis thaliana OX...	[more]
P80264	1.8e-16	87.23	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 (Fragment) OS=Solanum tube...	[more]
Q37720	4.9e-14	62.96	NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Pylaiella littoralis OX=2885 GN...	[more]
A1B495	6.4e-14	64.29	NADH-quinone oxidoreductase subunit D OS=Paracoccus denitrificans (strain Pd 122...	[more]

BLAST of CsGy6G017014 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647102.1	9.92e-37	98.39	hypothetical protein Csa_021723 [Cucumis sativus] >KAE8647129.1 hypothetical pro...	[more]
KAG6633581.1	9.28e-35	95.16	hypothetical protein CIPAW_12G057700 [Carya illinoinensis]	[more]
OVA00940.1	9.57e-35	95.16	hypothetical protein BVC80_1251g6 [Macleaya cordata] >OVA10787.1 hypothetical pr...	[more]
GAY68549.1	3.91e-34	93.55	hypothetical protein CUMW_265030 [Citrus unshiu]	[more]
PUZ39252.1	3.91e-34	95.16	hypothetical protein GQ55_9G272100 [Panicum hallii var. hallii] >RLM65549.1 hypo...	[more]

BLAST of CsGy6G017014 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A200QK65	4.64e-35	95.16	Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_1251g6 PE=3 SV=1	[more]
A0A6N2KZZ0	1.33e-34	93.55	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS146020 PE=3 SV=...	[more]
A0A3L6PYF8	1.89e-34	95.16	NAD(P)H dehydrogenase subunit H OS=Panicum miliaceum OX=4540 GN=C2845_PM16G00630...	[more]
A0A2T7C7E7	1.89e-34	95.16	NAD(P)H dehydrogenase subunit H OS=Panicum hallii var. hallii OX=1504633 GN=GQ55...	[more]
A0A2H5QVE6	1.89e-34	93.55	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_265030 PE=3 SV=1	[more]

BLAST of CsGy6G017014 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00510.1	4.7e-20	85.19	NADH dehydrogenase subunit 7	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029014	[NiFe]-hydrogenase, large subunit	GENE3D	1.10.645.10		coord: 10..60 e-value: 1.4E-11 score: 45.8
IPR029014	[NiFe]-hydrogenase, large subunit	SUPERFAMILY	56762	HydB/Nqo4-like	coord: 7..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G017014.1	CsGy6G017014.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion