CsGy6G017005 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy6G017005
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Descriptioncondensin-2 complex subunit D3
LocationGy14Chr6: 17544103 .. 17544399 (+)
RNA-Seq ExpressionCsGy6G017005
SyntenyCsGy6G017005
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAAGAAAGCATCTGCTAGGAGCAAGTCCTTGTCCCGAGCAATCACTGCAGCTTACACCATTGGCTCTTTGATTCTCATTTGTCCATCGGCTGACATGACTACCATAGTACCACTTCTCCACACCATTATTACTTCTGGAAACCGTGATCTCAAATCTAATAAACTACCAATTCAAACTGCATCTCTGAAGGAAACTGCTCCTTCTTTATACATTCAAGCATGGTTGACAATGGGGAAGATTTGCCTTACTGATGAGAAGCGAGCAAAGAGTTACATTCCTCTATTTGTACAG

mRNA sequence

ATGGGGAAGAAAGCATCTGCTAGGAGCAAGTCCTTGTCCCGAGCAATCACTGCAGCTTACACCATTGGCTCTTTGATTCTCATTTGTCCATCGGCTGACATGACTACCATAGTACCACTTCTCCACACCATTATTACTTCTGGAAACCGTGATCTCAAATCTAATAAACTACCAATTCAAACTGCATCTCTGAAGGAAACTGCTCCTTCTTTATACATTCAAGCATGGTTGACAATGGGGAAGATTTGCCTTACTGATGAGAAGCGAGCAAAGAGTTACATTCCTCTATTTGTACAG

Coding sequence (CDS)

ATGGGGAAGAAAGCATCTGCTAGGAGCAAGTCCTTGTCCCGAGCAATCACTGCAGCTTACACCATTGGCTCTTTGATTCTCATTTGTCCATCGGCTGACATGACTACCATAGTACCACTTCTCCACACCATTATTACTTCTGGAAACCGTGATCTCAAATCTAATAAACTACCAATTCAAACTGCATCTCTGAAGGAAACTGCTCCTTCTTTATACATTCAAGCATGGTTGACAATGGGGAAGATTTGCCTTACTGATGAGAAGCGAGCAAAGAGTTACATTCCTCTATTTGTACAG

Protein sequence

MGKKASARSKSLSRAITAAYTIGSLILICPSADMTTIVPLLHTIITSGNRDLKSNKLPIQTASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQ
Homology
[Close]
BLAST of CsGy6G017005 vs. NCBI nr
Match: KAE8637391.1 (hypothetical protein CSA_018334, partial [Cucumis sativus])

HSP 1 Score: 191 bits (485), Expect = 1.12e-54
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1   MGKKASARSKSLSRAITAAYTIGSLILICPSADMTTIVPLLHTIITSGNRDLKSNKLPIQ 60
           MGKKASARSKSLSRAITAAYTIGSLILICPSADMTTIVPLLHTIITSGNRDLKSNKLPIQ
Sbjct: 446 MGKKASARSKSLSRAITAAYTIGSLILICPSADMTTIVPLLHTIITSGNRDLKSNKLPIQ 505

Query: 61  TASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQ 99
           TASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQ
Sbjct: 506 TASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQ 544

[Close]
BLAST of CsGy6G017005 vs. NCBI nr
Match: XP_008458433.1 (PREDICTED: condensin-2 complex subunit D3 [Cucumis melo])

HSP 1 Score: 185 bits (469), Expect = 9.01e-52
Identity = 96/99 (96.97%), Postives = 98/99 (98.99%), Query Frame = 0 

Query: 1   MGKKASARSKSLSRAITAAYTIGSLILICPSADMTTIVPLLHTIITSGNRDLKSNKLPIQ 60
           MGKKASA S+SLSRAITAAYTIGSLILICPSA+MTTIVPLLHTIITSGNRDLKSNKLPIQ
Sbjct: 789 MGKKASAGSQSLSRAITAAYTIGSLILICPSANMTTIVPLLHTIITSGNRDLKSNKLPIQ 848

Query: 61  TASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQ 99
           TASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQ
Sbjct: 849 TASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQ 887

[Close]
BLAST of CsGy6G017005 vs. NCBI nr
Match: XP_038874592.1 (condensin-2 complex subunit D3 isoform X2 [Benincasa hispida])

HSP 1 Score: 181 bits (458), Expect = 2.63e-50
Identity = 92/99 (92.93%), Postives = 95/99 (95.96%), Query Frame = 0 

Query: 1   MGKKASARSKSLSRAITAAYTIGSLILICPSADMTTIVPLLHTIITSGNRDLKSNKLPIQ 60
           MGKKA+ARSKSLSRA TA YTIGSLILICPSADMTTI+PLLHTIITSGNRD KSNKLPIQ
Sbjct: 788 MGKKATARSKSLSRASTATYTIGSLILICPSADMTTIIPLLHTIITSGNRDPKSNKLPIQ 847

Query: 61  TASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQ 99
           TASLKETAPSLY+QAWLTMGKICL DEKRAKSYIPLFVQ
Sbjct: 848 TASLKETAPSLYVQAWLTMGKICLADEKRAKSYIPLFVQ 886

[Close]
BLAST of CsGy6G017005 vs. NCBI nr
Match: XP_038874590.1 (condensin-2 complex subunit D3 isoform X1 [Benincasa hispida])

HSP 1 Score: 181 bits (458), Expect = 2.74e-50
Identity = 92/99 (92.93%), Postives = 95/99 (95.96%), Query Frame = 0 

Query: 1   MGKKASARSKSLSRAITAAYTIGSLILICPSADMTTIVPLLHTIITSGNRDLKSNKLPIQ 60
           MGKKA+ARSKSLSRA TA YTIGSLILICPSADMTTI+PLLHTIITSGNRD KSNKLPIQ
Sbjct: 788 MGKKATARSKSLSRASTATYTIGSLILICPSADMTTIIPLLHTIITSGNRDPKSNKLPIQ 847

Query: 61  TASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQ 99
           TASLKETAPSLY+QAWLTMGKICL DEKRAKSYIPLFVQ
Sbjct: 848 TASLKETAPSLYVQAWLTMGKICLADEKRAKSYIPLFVQ 886

[Close]
BLAST of CsGy6G017005 vs. NCBI nr
Match: XP_023547430.1 (condensin-2 complex subunit D3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 175 bits (443), Expect = 2.88e-48
Identity = 87/99 (87.88%), Postives = 95/99 (95.96%), Query Frame = 0 

Query: 1   MGKKASARSKSLSRAITAAYTIGSLILICPSADMTTIVPLLHTIITSGNRDLKSNKLPIQ 60
           +GK+A+A SKSLSRAITAAYTIGSLI+ICPSAD+TTI+PLLHTIITSGNRD KSNKLPIQ
Sbjct: 817 LGKRATAPSKSLSRAITAAYTIGSLIIICPSADITTIIPLLHTIITSGNRDPKSNKLPIQ 876

Query: 61  TASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQ 99
           T S+KETAPSLY+QAWLTMGKICL DEKRAKSYIPLFVQ
Sbjct: 877 TVSIKETAPSLYVQAWLTMGKICLADEKRAKSYIPLFVQ 915

[Close]
BLAST of CsGy6G017005 vs. ExPASy TrEMBL
Match: A0A1S3C933 (condensin-2 complex subunit D3 OS=Cucumis melo OX=3656 GN=LOC103497846 PE=4 SV=1)

HSP 1 Score: 185 bits (469), Expect = 4.36e-52
Identity = 96/99 (96.97%), Postives = 98/99 (98.99%), Query Frame = 0 

Query: 1   MGKKASARSKSLSRAITAAYTIGSLILICPSADMTTIVPLLHTIITSGNRDLKSNKLPIQ 60
           MGKKASA S+SLSRAITAAYTIGSLILICPSA+MTTIVPLLHTIITSGNRDLKSNKLPIQ
Sbjct: 789 MGKKASAGSQSLSRAITAAYTIGSLILICPSANMTTIVPLLHTIITSGNRDLKSNKLPIQ 848

Query: 61  TASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQ 99
           TASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQ
Sbjct: 849 TASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQ 887

[Close]
BLAST of CsGy6G017005 vs. ExPASy TrEMBL
Match: A0A6J1CAM9 (condensin-2 complex subunit D3 OS=Momordica charantia OX=3673 GN=LOC111009846 PE=4 SV=1)

HSP 1 Score: 174 bits (441), Expect = 2.59e-48
Identity = 88/99 (88.89%), Postives = 93/99 (93.94%), Query Frame = 0 

Query: 1   MGKKASARSKSLSRAITAAYTIGSLILICPSADMTTIVPLLHTIITSGNRDLKSNKLPIQ 60
           MGKKA+A+SK LS+AITA YTIGSLILICPSADMTTI+PLLHTIITSGNRD KSNKLPIQ
Sbjct: 818 MGKKATAKSKVLSQAITAVYTIGSLILICPSADMTTIIPLLHTIITSGNRDPKSNKLPIQ 877

Query: 61  TASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQ 99
           T SLKE APSLY+QAWLTMGKICL DEKRAKSYIPLFVQ
Sbjct: 878 TVSLKEIAPSLYVQAWLTMGKICLADEKRAKSYIPLFVQ 916

[Close]
BLAST of CsGy6G017005 vs. ExPASy TrEMBL
Match: A0A6J1H4Z7 (condensin-2 complex subunit D3 OS=Cucurbita moschata OX=3662 GN=LOC111460444 PE=4 SV=1)

HSP 1 Score: 171 bits (432), Expect = 4.24e-47
Identity = 85/99 (85.86%), Postives = 94/99 (94.95%), Query Frame = 0 

Query: 1   MGKKASARSKSLSRAITAAYTIGSLILICPSADMTTIVPLLHTIITSGNRDLKSNKLPIQ 60
           +GK+A+A SKSLSRAITAAYTIGSLI+ICPSAD+TTI+PLLHTIITSGNRD KSNKLPIQ
Sbjct: 812 LGKRATAPSKSLSRAITAAYTIGSLIIICPSADITTIIPLLHTIITSGNRDPKSNKLPIQ 871

Query: 61  TASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQ 99
           T S+KETAPSLY+QAWLTMGKICL DEK AKSYIPLF+Q
Sbjct: 872 TVSIKETAPSLYVQAWLTMGKICLADEKCAKSYIPLFLQ 910

[Close]
BLAST of CsGy6G017005 vs. ExPASy TrEMBL
Match: A0A6J1L4I0 (condensin-2 complex subunit D3 OS=Cucurbita maxima OX=3661 GN=LOC111499074 PE=4 SV=1)

HSP 1 Score: 171 bits (432), Expect = 4.24e-47
Identity = 84/99 (84.85%), Postives = 94/99 (94.95%), Query Frame = 0 

Query: 1   MGKKASARSKSLSRAITAAYTIGSLILICPSADMTTIVPLLHTIITSGNRDLKSNKLPIQ 60
           +GK+A+A SKSLSRAITAAYTIGSLI+ICPSAD+TTI+PLLHT+ITSGNRD KSNKLPIQ
Sbjct: 817 LGKRATAPSKSLSRAITAAYTIGSLIIICPSADITTIIPLLHTVITSGNRDSKSNKLPIQ 876

Query: 61  TASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQ 99
           T S++ETAPSLY+QAWLTMGKICL DEK AKSYIPLFVQ
Sbjct: 877 TVSIRETAPSLYVQAWLTMGKICLADEKCAKSYIPLFVQ 915

[Close]
BLAST of CsGy6G017005 vs. ExPASy TrEMBL
Match: A0A5N6RG10 (Cnd1 domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_015397 PE=4 SV=1)

HSP 1 Score: 145 bits (365), Expect = 4.58e-38
Identity = 72/98 (73.47%), Postives = 81/98 (82.65%), Query Frame = 0 

Query: 2   GKKASARSKSLSRAITAAYTIGSLILICPSADMTTIVPLLHTIITSGNRDLKSNKLPIQT 61
           GK+A+A S+ LS A+TA YTIGSL+++CP+ADM  I PLLHTIITSGN D K NKLP  T
Sbjct: 811 GKRAAAMSRLLSEAVTAVYTIGSLVIVCPTADMNAITPLLHTIITSGNSDPKLNKLPGPT 870

Query: 62  ASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQ 99
            SLK+TAPSLYIQAWLTMGKICL D K AK YIPLFVQ
Sbjct: 871 VSLKQTAPSLYIQAWLTMGKICLADGKLAKKYIPLFVQ 908

[Close]
BLAST of CsGy6G017005 vs. TAIR 10
Match: AT4G15890.1 (binding )

HSP 1 Score: 113.2 bits (282), Expect = 1.2e-25
Identity = 59/98 (60.20%), Postives = 69/98 (70.41%), Query Frame = 0 

Query: 3   KKASARSKSLSRAITAAYTIGSLILICPSADMTTIVPLLHTIITSGNRDLK-SNKLPIQT 62
           K+    SK LS+A+TA YTIGS ++I PSAD T IVP LHT+ITSGN D K  NKLP   
Sbjct: 793 KRLDTVSKKLSKAVTAVYTIGSCVIIYPSADTTKIVPFLHTVITSGNSDSKLKNKLPQAN 852

Query: 63  ASLKETAPSLYIQAWLTMGKICLTDEKRAKSYIPLFVQ 100
             LK+ AP LY Q+WLTM K+CL D K AK Y+PLF Q
Sbjct: 853 VCLKQKAPLLYSQSWLTMAKMCLADGKLAKRYLPLFAQ 890

The following BLAST results are available for this feature:
BLAST of CsGy6G017005 vs.
Match NameE-valueIdentityDescription
BLAST of CsGy6G017005 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8637391.11.12e-54100.00hypothetical protein CSA_018334, partial [Cucumis sativus][more]
XP_008458433.19.01e-5296.97PREDICTED: condensin-2 complex subunit D3 [Cucumis melo][more]
XP_038874592.12.63e-5092.93condensin-2 complex subunit D3 isoform X2 [Benincasa hispida][more]
XP_038874590.12.74e-5092.93condensin-2 complex subunit D3 isoform X1 [Benincasa hispida][more]
XP_023547430.12.88e-4887.88condensin-2 complex subunit D3 [Cucurbita pepo subsp. pepo][more]
BLAST of CsGy6G017005 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3C9334.36e-5296.97condensin-2 complex subunit D3 OS=Cucumis melo OX=3656 GN=LOC103497846 PE=4 SV=1[more]
A0A6J1CAM92.59e-4888.89condensin-2 complex subunit D3 OS=Momordica charantia OX=3673 GN=LOC111009846 PE... [more]
A0A6J1H4Z74.24e-4785.86condensin-2 complex subunit D3 OS=Cucurbita moschata OX=3662 GN=LOC111460444 PE=... [more]
A0A6J1L4I04.24e-4784.85condensin-2 complex subunit D3 OS=Cucurbita maxima OX=3661 GN=LOC111499074 PE=4 ... [more]
A0A5N6RG104.58e-3873.47Cnd1 domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_015397 PE... [more]
BLAST of CsGy6G017005 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G15890.11.2e-2560.20binding [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR14222:SF1CONDENSIN-2 COMPLEX SUBUNIT D3coord: 5..99
IPR026971Condensin subunit 1/Condensin-2 complex subunit D3PANTHERPTHR14222CONDENSINcoord: 5..99

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy6G017005.1CsGy6G017005.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0098653 centromere clustering
biological_process GO:0010032 meiotic chromosome condensation
biological_process GO:0009556 microsporogenesis
biological_process GO:0007076 mitotic chromosome condensation
cellular_component GO:0000779 condensed chromosome, centromeric region
cellular_component GO:0005634 nucleus
molecular_function GO:0042393 histone binding