CsGy6G016625 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G016625
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	AMSH-like ubiquitin thioesterase 3
Location	Gy14Chr6: 15687903 .. 15688121 (+)
RNA-Seq Expression	CsGy6G016625
Synteny	CsGy6G016625

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACACGACAGATCGTTAAAACCGCGAACCGGCAAGTCGGGTCAAGGAAGAAATTGCGTGAAGCGAGTCGCGATTGTGAATTCGCCCCTCGAAAACTTCACGGCCAAAGCCCTGAATCTGCTCCTACAAGACTGCAACCTCATCATGTCGACATTCAAGTTCCAGCTTCAACTTCAATTCTTCGGTCCCACATTCATTCTTCGCGCTTAAGCAAATAA

mRNA sequence

ATGACACGACAGATCGTTAAAACCGCGAACCGGCAAGTCGGGTCAAGGAAGAAATTGCGTGAAGCGAGTCGCGATTGTGAATTCGCCCCTCGAAAACTTCACGGCCAAAGCCCTGAATCTGCTCCTACAAGACTGCAACCTCATCATGTCGACATTCAAGTTCCAGCTTCAACTTCAATTCTTCGGTCCCACATTCATTCTTCGCGCTTAAGCAAATAA

Coding sequence (CDS)

ATGACACGACAGATCGTTAAAACCGCGAACCGGCAAGTCGGGTCAAGGAAGAAATTGCGTGAAGCGAGTCGCGATTGTGAATTCGCCCCTCGAAAACTTCACGGCCAAAGCCCTGAATCTGCTCCTACAAGACTGCAACCTCATCATGTCGACATTCAAGTTCCAGCTTCAACTTCAATTCTTCGGTCCCACATTCATTCTTCGCGCTTAAGCAAATAA

Protein sequence

MTRQIVKTANRQVGSRKKLREASRDCEFAPRKLHGQSPESAPTRLQPHHVDIQVPASTSILRSHIHSSRLSK*

Homology

[Close]

BLAST of CsGy6G016625 vs. NCBI nr
Match: KGN47396.1 (hypothetical protein Csa_023027 [Cucumis sativus])

HSP 1 Score: 138 bits (347), Expect = 7.45e-41
Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1  MTRQIVKTANRQVGSRKKLREASRDCEFAPRKLHGQSPESAPTRLQPHHVDIQVPASTSI 60
          MTRQIVKTANRQVGSRKKLR ASRDCEFAPRKLHGQSPESAPTRLQPHHVDIQVPASTSI
Sbjct: 1  MTRQIVKTANRQVGSRKKLRVASRDCEFAPRKLHGQSPESAPTRLQPHHVDIQVPASTSI 60

Query: 61 LRSHIHSSRLSK 72
          LRSHIHSSRLSK
Sbjct: 61 LRSHIHSSRLSK 72

[Close]

BLAST of CsGy6G016625 vs. NCBI nr
Match: TYK02941.1 (AMSH-like ubiquitin thioesterase 3 [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 2.05e-20
Identity = 47/54 (87.04%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 1  MTRQIVKTANRQVGSRKKLREASRDCEFAPRKLHGQSPESAPTRLQPHHVDIQV 54
          MTRQIVKT NRQVGSRKKLR AS DCEFA RK HGQSPES+PTRLQPHHVDIQ+
Sbjct: 1  MTRQIVKTTNRQVGSRKKLRVASLDCEFASRKFHGQSPESSPTRLQPHHVDIQM 54

[Close]

BLAST of CsGy6G016625 vs. ExPASy TrEMBL
Match: A0A0A0KHZ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G311010 PE=4 SV=1)

HSP 1 Score: 138 bits (347), Expect = 3.61e-41
Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1  MTRQIVKTANRQVGSRKKLREASRDCEFAPRKLHGQSPESAPTRLQPHHVDIQVPASTSI 60
          MTRQIVKTANRQVGSRKKLR ASRDCEFAPRKLHGQSPESAPTRLQPHHVDIQVPASTSI
Sbjct: 1  MTRQIVKTANRQVGSRKKLRVASRDCEFAPRKLHGQSPESAPTRLQPHHVDIQVPASTSI 60

Query: 61 LRSHIHSSRLSK 72
          LRSHIHSSRLSK
Sbjct: 61 LRSHIHSSRLSK 72

[Close]

BLAST of CsGy6G016625 vs. ExPASy TrEMBL
Match: A0A5D3BT78 (AMSH-like ubiquitin thioesterase 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00210 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 9.93e-21
Identity = 47/54 (87.04%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 1  MTRQIVKTANRQVGSRKKLREASRDCEFAPRKLHGQSPESAPTRLQPHHVDIQV 54
          MTRQIVKT NRQVGSRKKLR AS DCEFA RK HGQSPES+PTRLQPHHVDIQ+
Sbjct: 1  MTRQIVKTTNRQVGSRKKLRVASLDCEFASRKFHGQSPESSPTRLQPHHVDIQM 54

The following BLAST results are available for this feature:

BLAST of CsGy6G016625 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy6G016625 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47396.1	7.45e-41	98.61	hypothetical protein Csa_023027 [Cucumis sativus]	[more]
TYK02941.1	2.05e-20	87.04	AMSH-like ubiquitin thioesterase 3 [Cucumis melo var. makuwa]	[more]

BLAST of CsGy6G016625 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHZ7	3.61e-41	98.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G311010 PE=4 SV=1	[more]
A0A5D3BT78	9.93e-21	87.04	AMSH-like ubiquitin thioesterase 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]

BLAST of CsGy6G016625 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G016625.1	CsGy6G016625.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070536	protein K63-linked deubiquitination
molecular_function	GO:0070122	isopeptidase activity
molecular_function	GO:0061578	Lys63-specific deubiquitinase activity
molecular_function	GO:0008237	metallopeptidase activity