CsGy6G015880 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy6G015880
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionNADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3
LocationGy14Chr6: 14909399 .. 14912529 (+)
RNA-Seq ExpressionCsGy6G015880
SyntenyCsGy6G015880
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATGTCGTCTCTTCGCAAAGCTACTGCTCGATTTCTTTCGCAAAACACTAAATGAAAAATGCAATTATATCAAAGTTGATGTCCTAAAGAAGAAAAGTAAAAGAGAAAAAGGGATTTGGGGGCGAAACTCCGGGACGGGGACAGAGGGCCTGAGAAAAATGGCGGCAAGGCAGAAAGCGGTGGCGACGCTGCCTAATCTAATTAGAACCCTTAAAAATGATCGCCGGAAGCCTGGTTTCAGCCAGCCTCTTCCGTCGTTGAGATGTGCCTTTTCACTTTACGATCAGATCAATCTCATCGACAATGTCCCTGAAGATCAGCTTCGTTTTCAACGGTACTGCCCTAACTTCTCCTTTTTGTCTTTTGCATCGATTTCTTTCCTCAATTTTATATCTTTGACTCTTTTATGCGGGGATTTAAGGTATAGTGAGACGGGGTTCACTGTGAATGGAGTGGATTATGAGGGCAACTTGCTTTGTGTTGGGAATTTGTTGATGTCTTGGACTCCTAAGAAATTTTCGGAAATTACGTCCGATAGGTTTGCTTTGCATTTCTTGTTCCTAACTTACAATACTCAATTTACTTCCTTTGTTCTTTTTGGTGATTGAAATGTTTTTTTTTTTTTTTTTTTTGCAGCTTATCTATCTTCCAGATTGTGCGCCCTATTCCAGGTAAAATCTGTTGTTGTGTTCGGAAAATGTGTTGAATTATTGGGCATTGTTGAAGTAGTTTTAATACGAGTGTCTAAAGATACCTAGATTTGACGTTTCTATTGAAATGTGTTTATTACTAAAGGACGTCTGTGATTTTCCTTGACAATTGGTGCCCAAATGTTATATGGTAAGTTGTATTGTCCTGTCAGATTATTGAGGTGAAGTGCAAGCTGGCCCGCGACTGTGGACGAGTAAGGTTCTTGGACTAGTTTTTCTGTGCTTGAGCATGAGCAAGACTTTAACTTTATCATTCCTTTCCTTCTTTCAATACTGTAACATGTGGGGTAAGATTTTCACGTCTGCCTTAGACGAGGATATCTTATGAGATAGTGCAGGTTGTGGCCTAATTGTTCCTTTGAAGTATCCCACAATACAACCATGCCTTAGTTTTGCTGTTTAAATAATTAGATTTTTGATAATTTGACTCGTGTACCTAGTTAAAAATGTAGACGGATCTGAAGCTTTTAAACAGGAAGATGATGAGGATTTTTTTTTCTTCACTCTTTCTCGTTTTTTTCTTCCTTCTCTCTCTTTCGGCTGATAAGCAAGTCTACCCTCCATATACCTTTCTTTGGCACTTCGGACCGGTCTTAATACTCCATCCAGCTAGGTGATAGCTTCTAACCTCTGCCGATATTCACACCTTCCCGATCCCGATACTCTCTCTATTTTGATTATGCTAGAAGAGGGAAGAGGACCAAATGAGATATTTACATCAGCTAGCTAATGTTGTAAGGGACGTGTAATATGTTATAGAGGAGATGGGAGAATGAATCTAGAATTTGTAAATTTGTTATTGAGAAAGGGAGGAATAACATAATTAGAGTGGACTCGTAATATTTATCAATTAAAAGCTTCTTGAATATGTGAAAGATTTGCACTTTTCAGCCATTGAATGAATTACCAAGACCTAAACTCTTGTTTCTTTATTCTTTCTCTGATTCTGAGATGAGGATGTCAAGTGTACGTTTCTGTTAACAAGGTTTATGGTTTTCTTTCTTAGGCATTCTTCTAGAATCTGACATGAGAGATTACTTCCATTTAAAGTTCAATGCATAAGCTAGCCTGTAAACCAAATATTCTGTTTATTTTCGAGCTCTGCCGTCATCATCTTAGTGCCGTGTATTGTTCATATTTGCTCTTTGCTAGCACATTTTTGTTGATTTCTACTGTCAACTGATTAATTTTCTTAATTTTAATTTTTTTAAAATCTTTCTTATTGTCAGAAATTCTAATACTTGGCTATGGGAGATAAACTGAACTAGTAAATCCTGAATTGAGGCAGTTCATTCGTTCCACTGGCATGAAGTTGGAAGCTGTAGACACGGTACTTTTGGTTTGAAATTATGTTGTTTGTCGAATTTGTCTTGATCCATAAGATAATTACTTTTCATGCATCTGAAAATCAAGATTTTGAGCTATCTTATGGGTCTGTGACTATTGGTGGGAAACAGTATATTCTTTGTTTAGGATAAGAAAATAGGTGGGAAAACATCCACCAACCATAATAGCCTCGTCAAAAGAGATTGTAGTGGGTTATTGTATTGTCTAGTTTGTGATAAGATAAATTAACGTGTCATCAATTCACCAGTAACATCCTCTTTTCCTTACAATCCCTTGATCAGATGGGTATTAAAGACTTTTTAGTGTAGGATATTAAAAACCACATGTTTCTTCATCAATAAAAAGAAAAGAAAAAAAAACCAACCCACATGATGTAGTGGAAATAGGATCTGAATTATAGGTGATATTTGAGAATGATGTTAAGTTCAACTGTTCAAGAACTATCTTTAGAGCCATATGTCAACTTTTGCTTAAGAAAGAAACAAGTGGGTTGTTGTTGAGTAAATTACCAATTACAATGATCAACCGGGGACTTGCTAGTTTAAACAGTGGGCTGTTTGGAATCTCGAATGGTCTCATTTTGTCTAAATTTAACTAGTTTTTGACACGATGGATAATTTGTTACTGTAGATCAAGTAGTTATCTGCACTCTCTCTTTCTCTCAAGGCAAATCATCCATGTCCAGCAATTCTCTTCATATCCTATGTATTTCCGTACACTACAAACCTAATCGATATTTGATATTTGAAAAATGAGGGTACTTCAGATATAGGGCAGAATTATGCACTCTACTTGGGAAGAGGGCTGTCTCTTCTTGTACAACTACTTTTCACTTAACCTTTAACCTCAGACCTTGGGAGGTTGAGAGTACATGTATAGACCAGTTGACCTATGTTCGAGTTGGCATGTTTATCCTTAACAAAGCTTTGTTATTTGCAGAGAAATGCGGCATCAACTTATAATATCCTAAATGAGGAGGGTAGAATTGTAGCTGCAGCGCTTCTGCCTTATGGAGTTTCTTCATGACCCACCGCCCAGAGCCAGACTCGGTTGTTGTTATGGATGCCTCTAAAT

mRNA sequence

CATGTCGTCTCTTCGCAAAGCTACTGCTCGATTTCTTTCGCAAAACACTAAATGAAAAATGCAATTATATCAAAGTTGATGTCCTAAAGAAGAAAAGTAAAAGAGAAAAAGGGATTTGGGGGCGAAACTCCGGGACGGGGACAGAGGGCCTGAGAAAAATGGCGGCAAGGCAGAAAGCGGTGGCGACGCTGCCTAATCTAATTAGAACCCTTAAAAATGATCGCCGGAAGCCTGGTTTCAGCCAGCCTCTTCCGTCGTTGAGATGTGCCTTTTCACTTTACGATCAGATCAATCTCATCGACAATGTCCCTGAAGATCAGCTTCGTTTTCAACGGTACTGCCCTAACTTCTCCTTTTTGTCTTTTGCATCGATTTCTTTCCTCAATTTTATATCTTTGACTCTTTTATGCGGGGATTTAAGGTATAGTGAGACGGGGTTCACTGTGAATGGAGTGGATTATGAGGGCAACTTGCTTTGTGTTGGGAATTTGTTGATGTCTTGGACTCCTAAGAAATTTTCGGAAATTACGTCCGATAGCTTATCTATCTTCCAGATTGTGCGCCCTATTCCAGGTAAAATCTGTTGTTGTGTTCGGAAAATGTGTTGAATTATTGGGCATTGTTGAAGTAGTTTTAATACGAGTGTCTAAAGATACCTAGATTTGACGTTTCTATTGAAATGTGTTTATTACTAAAGGACGTCTGTGATTTTCCTTGACAATTGGTGCCCAAATGTTATATGGTAAGTTGTATTGTCCTGTCAGATTATTGAGGTGAAGTGCAAGCTGGCCCGCGACTGTGGACGAGTAAGGTTCTTGGACTAGTTTTTCTGTGCTTGAGCATGAGCAAGACTTTAACTTTATCATTCCTTTCCTTCTTTCAATACTGTAACATGTGGGGTAAGATTTTCACGTCTGCCTTAGACGAGGATATCTTATGAGATAGTGCAGGTTGTGGCCTAATTGTTCCTTTGAAGTATCCCACAATACAACCATGCCTTAGTTTTGCTGTTTAAATAATTAGATTTTTGATAATTTGACTCGTGTACCTAGTTAAAAATGTAGACGGATCTGAAGCTTTTAAACAGGAAGATGATGAGGATTTTTTTTTCTTCACTCTTTCTCGTTTTTTTCTTCCTTCTCTCTCTTTCGGCTGATAAGCAAGTCTACCCTCCATATACCTTTCTTTGGCACTTCGGACCGGTCTTAATACTCCATCCAGCTAGGTGATAGCTTCTAACCTCTGCCGATATTCACACCTTCCCGATCCCGATACTCTCTCTATTTTGATTATGCTAGAAGAGGGAAGAGGACCAAATGAGATATTTACATCAGCTAGCTAATGTTGTAAGGGACGTGTAATATGTTATAGAGGAGATGGGAGAATGAATCTAGAATTTGTAAATTTGTTATTGAGAAAGGGAGGAATAACATAATTAGAGTGGACTCGTAATATTTATCAATTAAAAGCTTCTTGAATATGTGAAAGATTTGCACTTTTCAGCCATTGAATGAATTACCAAGACCTAAACTCTTGTTTCTTTATTCTTTCTCTGATTCTGAGATGAGGATGTCAAGTGTACGTTTCTGTTAACAAGGTTTATGGTTTTCTTTCTTAGGCATTCTTCTAGAATCTGACATGAGAGATTACTTCCATTTAAAGTTCAATGCATAAGCTAGCCTGTAAACCAAATATTCTGTTTATTTTCGAGCTCTGCCGTCATCATCTTAGTGCCGTGTATTGTTCATATTTGCTCTTTGCTAGCACATTTTTGTTGATTTCTACTGTCAACTGATTAATTTTCTTAATTTTAATTTTTTTAAAATCTTTCTTATTGTCAGAAATTCTAATACTTGGCTATGGGAGATAAACTGAACTAGTAAATCCTGAATTGAGGCAGTTCATTCGTTCCACTGGCATGAAGTTGGAAGCTGTAGACACGAGAAATGCGGCATCAACTTATAATATCCTAAATGAGGAGGGTAGAATTGTAGCTGCAGCGCTTCTGCCTTATGGAGTTTCTTCATGACCCACCGCCCAGAGCCAGACTCGGTTGTTGTTATGGATGCCTCTAAAT

Coding sequence (CDS)

ATGGCGGCAAGGCAGAAAGCGGTGGCGACGCTGCCTAATCTAATTAGAACCCTTAAAAATGATCGCCGGAAGCCTGGTTTCAGCCAGCCTCTTCCGTCGTTGAGATGTGCCTTTTCACTTTACGATCAGATCAATCTCATCGACAATGTCCCTGAAGATCAGCTTCGTTTTCAACGGTACTGCCCTAACTTCTCCTTTTTGTCTTTTGCATCGATTTCTTTCCTCAATTTTATATCTTTGACTCTTTTATGCGGGGATTTAAGGTATAGTGAGACGGGGTTCACTGTGAATGGAGTGGATTATGAGGGCAACTTGCTTTGTGTTGGGAATTTGTTGATGTCTTGGACTCCTAAGAAATTTTCGGAAATTACGTCCGATAGCTTATCTATCTTCCAGATTGTGCGCCCTATTCCAGGTAAAATCTGTTGTTGTGTTCGGAAAATGTGTTGA

Protein sequence

MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRCAFSLYDQINLIDNVPEDQLRFQRYCPNFSFLSFASISFLNFISLTLLCGDLRYSETGFTVNGVDYEGNLLCVGNLLMSWTPKKFSEITSDSLSIFQIVRPIPGKICCCVRKMC*
Homology
[Close]
BLAST of CsGy6G015880 vs. NCBI nr
Match: KAE8646648.1 (hypothetical protein Csa_005003 [Cucumis sativus])

HSP 1 Score: 275 bits (703), Expect = 5.83e-92
Identity = 135/138 (97.83%), Postives = 137/138 (99.28%), Query Frame = 0 

Query: 1   MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRCAFSLYDQINLIDNVPEDQLRFQRY 60
           MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLR AFSLYDQINLIDNVPEDQLRFQRY
Sbjct: 1   MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRY 60

Query: 61  CPNFSFLSFASISFLNFISLTLLCGDLRYSETGFTVNGVDYEGNLLCVGNLLMSWTPKKF 120
           CPNFSFLSFASISFLNFISLTLLCGDLRY+ETGFTVNGVDYEG+LLCVGNLLMSWTPKKF
Sbjct: 61  CPNFSFLSFASISFLNFISLTLLCGDLRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKF 120

Query: 121 SEITSDSLSIFQIVRPIP 138
           SEITSDSLSIFQIVRPIP
Sbjct: 121 SEITSDSLSIFQIVRPIP 138

[Close]
BLAST of CsGy6G015880 vs. NCBI nr
Match: KAE8647057.1 (hypothetical protein Csa_023061 [Cucumis sativus] >KAE8647320.1 hypothetical protein Csa_004005 [Cucumis sativus])

HSP 1 Score: 275 bits (703), Expect = 5.83e-92
Identity = 135/138 (97.83%), Postives = 137/138 (99.28%), Query Frame = 0 

Query: 1   MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRCAFSLYDQINLIDNVPEDQLRFQRY 60
           MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLR AFSLYDQINLIDNVPEDQLRFQRY
Sbjct: 1   MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRY 60

Query: 61  CPNFSFLSFASISFLNFISLTLLCGDLRYSETGFTVNGVDYEGNLLCVGNLLMSWTPKKF 120
           CPNFSFLSFASISFLNFISLTLLCGDLRY+ETGFTVNGVDYEG+LLCVGNLLMSWTPKKF
Sbjct: 61  CPNFSFLSFASISFLNFISLTLLCGDLRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKF 120

Query: 121 SEITSDSLSIFQIVRPIP 138
           SEITSDSLSIFQIVRPIP
Sbjct: 121 SEITSDSLSIFQIVRPIP 138

[Close]
BLAST of CsGy6G015880 vs. NCBI nr
Match: KAE8637205.1 (hypothetical protein CSA_004607 [Cucumis sativus])

HSP 1 Score: 251 bits (640), Expect = 3.09e-82
Identity = 122/130 (93.85%), Postives = 126/130 (96.92%), Query Frame = 0 

Query: 1   MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRCAFSLYDQINLIDNVPEDQLRFQRY 60
           MAAR KAVATLPNLIRTLKNDRRKPGFSQPLPSLR AFSLYDQINLIDNVPEDQLRFQRY
Sbjct: 1   MAARMKAVATLPNLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRY 60

Query: 61  CPNFSFLSFASISFLNFISLTLLCGDLRYSETGFTVNGVDYEGNLLCVGNLLMSWTPKKF 120
           CPNFSFLSFASISFLNFISLTLLCGDLRY+ETGFTVNGVDYEG+LLCVGNLLMSWTPKKF
Sbjct: 61  CPNFSFLSFASISFLNFISLTLLCGDLRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKF 120

Query: 121 SEITSDSLSI 130
           SEITSD  ++
Sbjct: 121 SEITSDRFAL 130

[Close]
BLAST of CsGy6G015880 vs. NCBI nr
Match: TYK24537.1 (NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 219 bits (557), Expect = 7.02e-71
Identity = 112/148 (75.68%), Postives = 117/148 (79.05%), Query Frame = 0 

Query: 1   MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRCAFSLYDQINLIDNVPEDQLRFQRY 60
           MAARQKAVATLP+LIRTLKNDRRKPGFSQPLPSLR AFSLYDQINLIDNVP+DQLRFQRY
Sbjct: 1   MAARQKAVATLPSLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPKDQLRFQRY 60

Query: 61  CPNFSFLSFASISFLNFISLTLLCGDLRYSETGFTVNGVDYEGNLLCVGNLLMSWTPKKF 120
                                        +ETGFTVNGVDYEG+LLCVGNLLMSW+PKKF
Sbjct: 61  -----------------------------TETGFTVNGVDYEGSLLCVGNLLMSWSPKKF 119

Query: 121 SEITSDSLSIFQIVRPIPGKICCCVRKM 148
           SEIT DSLSIFQIVRPIPGKICCCVRKM
Sbjct: 121 SEITPDSLSIFQIVRPIPGKICCCVRKM 119

[Close]
BLAST of CsGy6G015880 vs. NCBI nr
Match: KGN51474.2 (hypothetical protein Csa_008783 [Cucumis sativus])

HSP 1 Score: 209 bits (532), Expect = 1.84e-64
Identity = 100/105 (95.24%), Postives = 103/105 (98.10%), Query Frame = 0 

Query: 22  RRKPGFSQPLPSLRCAFSLYDQINLIDNVPEDQLRFQRYCPNFSFLSFASISFLNFISLT 81
           RRKPGFSQPL SLR AFSLYDQINLIDNVP+DQLRFQRYCPNFSFLSFASISFLNFISLT
Sbjct: 186 RRKPGFSQPLSSLRRAFSLYDQINLIDNVPKDQLRFQRYCPNFSFLSFASISFLNFISLT 245

Query: 82  LLCGDLRYSETGFTVNGVDYEGNLLCVGNLLMSWTPKKFSEITSD 126
           LLCGDLRY+ETGFTVNGVDYEG+LLCVGNLLMSWTPKKFSEITSD
Sbjct: 246 LLCGDLRYTETGFTVNGVDYEGSLLCVGNLLMSWTPKKFSEITSD 290

[Close]
BLAST of CsGy6G015880 vs. ExPASy TrEMBL
Match: A0A5D3DLM8 (NADH dehydrogenase (Ubiquinone) 1 alpha subcomplex assembly factor 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00790 PE=4 SV=1)

HSP 1 Score: 219 bits (557), Expect = 3.40e-71
Identity = 112/148 (75.68%), Postives = 117/148 (79.05%), Query Frame = 0 

Query: 1   MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRCAFSLYDQINLIDNVPEDQLRFQRY 60
           MAARQKAVATLP+LIRTLKNDRRKPGFSQPLPSLR AFSLYDQINLIDNVP+DQLRFQRY
Sbjct: 1   MAARQKAVATLPSLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPKDQLRFQRY 60

Query: 61  CPNFSFLSFASISFLNFISLTLLCGDLRYSETGFTVNGVDYEGNLLCVGNLLMSWTPKKF 120
                                        +ETGFTVNGVDYEG+LLCVGNLLMSW+PKKF
Sbjct: 61  -----------------------------TETGFTVNGVDYEGSLLCVGNLLMSWSPKKF 119

Query: 121 SEITSDSLSIFQIVRPIPGKICCCVRKM 148
           SEIT DSLSIFQIVRPIPGKICCCVRKM
Sbjct: 121 SEITPDSLSIFQIVRPIPGKICCCVRKM 119

[Close]
BLAST of CsGy6G015880 vs. ExPASy TrEMBL
Match: A0A5A7TES8 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G002470 PE=4 SV=1)

HSP 1 Score: 195 bits (495), Expect = 4.96e-61
Identity = 102/138 (73.91%), Postives = 107/138 (77.54%), Query Frame = 0 

Query: 1   MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRCAFSLYDQINLIDNVPEDQLRFQRY 60
           MAARQKAVATLP+LIRTLKNDRRKPGFSQPLPSLR AFSLYDQINLIDNVP+DQLRFQRY
Sbjct: 1   MAARQKAVATLPSLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPKDQLRFQRY 60

Query: 61  CPNFSFLSFASISFLNFISLTLLCGDLRYSETGFTVNGVDYEGNLLCVGNLLMSWTPKKF 120
                                        +ETGFTVNGVDYEG+LLCVGNLLMSW+PKKF
Sbjct: 61  -----------------------------TETGFTVNGVDYEGSLLCVGNLLMSWSPKKF 109

Query: 121 SEITSDSLSIFQIVRPIP 138
           SEIT DSLSIFQIVRPIP
Sbjct: 121 SEITPDSLSIFQIVRPIP 109

[Close]
BLAST of CsGy6G015880 vs. ExPASy TrEMBL
Match: A0A1S3CB84 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Cucumis melo OX=3656 GN=LOC103498992 PE=4 SV=1)

HSP 1 Score: 195 bits (495), Expect = 4.96e-61
Identity = 102/138 (73.91%), Postives = 107/138 (77.54%), Query Frame = 0 

Query: 1   MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRCAFSLYDQINLIDNVPEDQLRFQRY 60
           MAARQKAVATLP+LIRTLKNDRRKPGFSQPLPSLR AFSLYDQINLIDNVP+DQLRFQRY
Sbjct: 1   MAARQKAVATLPSLIRTLKNDRRKPGFSQPLPSLRRAFSLYDQINLIDNVPKDQLRFQRY 60

Query: 61  CPNFSFLSFASISFLNFISLTLLCGDLRYSETGFTVNGVDYEGNLLCVGNLLMSWTPKKF 120
                                        +ETGFTVNGVDYEG+LLCVGNLLMSW+PKKF
Sbjct: 61  -----------------------------TETGFTVNGVDYEGSLLCVGNLLMSWSPKKF 109

Query: 121 SEITSDSLSIFQIVRPIP 138
           SEIT DSLSIFQIVRPIP
Sbjct: 121 SEITPDSLSIFQIVRPIP 109

[Close]
BLAST of CsGy6G015880 vs. ExPASy TrEMBL
Match: A0A6J1HIQ3 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Cucurbita moschata OX=3662 GN=LOC111464400 PE=4 SV=1)

HSP 1 Score: 185 bits (470), Expect = 3.14e-57
Identity = 95/138 (68.84%), Postives = 105/138 (76.09%), Query Frame = 0 

Query: 1   MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRCAFSLYDQINLIDNVPEDQLRFQRY 60
           MAARQKAVATLPNLIR+++ DRR+PG SQPLPSLR AFSLYDQINLIDNVPEDQLRFQRY
Sbjct: 1   MAARQKAVATLPNLIRSIRKDRRRPGLSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQRY 60

Query: 61  CPNFSFLSFASISFLNFISLTLLCGDLRYSETGFTVNGVDYEGNLLCVGNLLMSWTPKKF 120
                                        +ETGFTVNG+DYEG+LLCVGNLLMSW+PKKF
Sbjct: 61  -----------------------------TETGFTVNGLDYEGSLLCVGNLLMSWSPKKF 109

Query: 121 SEITSDSLSIFQIVRPIP 138
           SEIT +SLSIFQI+RPIP
Sbjct: 121 SEITPESLSIFQIMRPIP 109

[Close]
BLAST of CsGy6G015880 vs. ExPASy TrEMBL
Match: A0A6J1KD25 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Cucurbita maxima OX=3661 GN=LOC111494507 PE=4 SV=1)

HSP 1 Score: 181 bits (459), Expect = 1.48e-55
Identity = 93/138 (67.39%), Postives = 104/138 (75.36%), Query Frame = 0 

Query: 1   MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRCAFSLYDQINLIDNVPEDQLRFQRY 60
           MAARQKAVATLPNLIR+++ DRR+PG SQPLPSLR AFSLYDQINLIDNVPEDQLRFQ Y
Sbjct: 1   MAARQKAVATLPNLIRSIRKDRRRPGLSQPLPSLRRAFSLYDQINLIDNVPEDQLRFQWY 60

Query: 61  CPNFSFLSFASISFLNFISLTLLCGDLRYSETGFTVNGVDYEGNLLCVGNLLMSWTPKKF 120
                                        +ETGFTVNG+DYEG+LLCVG+LLMSW+PKKF
Sbjct: 61  -----------------------------TETGFTVNGLDYEGSLLCVGDLLMSWSPKKF 109

Query: 121 SEITSDSLSIFQIVRPIP 138
           SEIT +SLSIFQI+RPIP
Sbjct: 121 SEITPESLSIFQIIRPIP 109

[Close]
BLAST of CsGy6G015880 vs. TAIR 10
Match: AT3G60150.1 (Protein of unknown function (DUF498/DUF598) )

HSP 1 Score: 148.3 bits (373), Expect = 5.0e-36
Identity = 81/138 (58.70%), Postives = 93/138 (67.39%), Query Frame = 0 

Query: 1   MAARQKAVATLPNLIRTLKNDRRKPGFSQPLPSLRCAFSLYDQINLIDNVPEDQLRFQRY 60
           MA RQKA+ATLP LI++++N+  K   S  LPSLR AFSLYDQINLIDNVPEDQLRFQ  
Sbjct: 1   MAVRQKAMATLPKLIQSMRNEVTKQP-SLVLPSLRRAFSLYDQINLIDNVPEDQLRFQ-- 60

Query: 61  CPNFSFLSFASISFLNFISLTLLCGDLRYSETGFTVNGVDYEGNLLCVGNLLMSWTPKKF 120
                                       + ET FTVNGV YEG+LLCVGNLLMSW+P+ F
Sbjct: 61  ---------------------------EFDETSFTVNGVKYEGSLLCVGNLLMSWSPRYF 108

Query: 121 SEITSDSLSIFQIVRPIP 139
           S+IT+DSLSIFQ VRPIP
Sbjct: 121 SDITTDSLSIFQTVRPIP 108

[Close]
BLAST of CsGy6G015880 vs. TAIR 10
Match: AT2G44525.1 (Protein of unknown function (DUF498/DUF598) )

HSP 1 Score: 145.2 bits (365), Expect = 4.2e-35
Identity = 80/139 (57.55%), Postives = 94/139 (67.63%), Query Frame = 0 

Query: 1   MAARQKAVATLPNLIRTLKNDRRKPGFSQP-LPSLRCAFSLYDQINLIDNVPEDQLRFQR 60
           MA R K++ATLP LI++++  +  P  S P LPSLR AFSLYDQINLIDNVPEDQLRFQ 
Sbjct: 1   MAMRLKSMATLPKLIQSMR--KEVPKHSNPVLPSLRRAFSLYDQINLIDNVPEDQLRFQ- 60

Query: 61  YCPNFSFLSFASISFLNFISLTLLCGDLRYSETGFTVNGVDYEGNLLCVGNLLMSWTPKK 120
                                        +++T FTVNGV YEG+LLCVGNLLMSW+P+K
Sbjct: 61  ----------------------------EFNDTSFTVNGVKYEGSLLCVGNLLMSWSPRK 108

Query: 121 FSEITSDSLSIFQIVRPIP 139
           FSEIT+DSLSIFQ VRPIP
Sbjct: 121 FSEITTDSLSIFQTVRPIP 108

The following BLAST results are available for this feature:
BLAST of CsGy6G015880 vs.
Match NameE-valueIdentityDescription
BLAST of CsGy6G015880 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8646648.15.83e-9297.83hypothetical protein Csa_005003 [Cucumis sativus][more]
KAE8647057.15.83e-9297.83hypothetical protein Csa_023061 [Cucumis sativus] >KAE8647320.1 hypothetical pro... [more]
KAE8637205.13.09e-8293.85hypothetical protein CSA_004607 [Cucumis sativus][more]
TYK24537.17.02e-7175.68NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 3-like [Cucum... [more]
KGN51474.21.84e-6495.24hypothetical protein Csa_008783 [Cucumis sativus][more]
BLAST of CsGy6G015880 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DLM83.40e-7175.68NADH dehydrogenase (Ubiquinone) 1 alpha subcomplex assembly factor 3-like OS=Cuc... [more]
A0A5A7TES84.96e-6173.91NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Cucumis ... [more]
A0A1S3CB844.96e-6173.91NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Cucumis ... [more]
A0A6J1HIQ33.14e-5768.84NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Cucurbit... [more]
A0A6J1KD251.48e-5567.39NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Cucurbit... [more]
BLAST of CsGy6G015880 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G60150.15.0e-3658.70Protein of unknown function (DUF498/DUF598) [more]
AT2G44525.14.2e-3557.55Protein of unknown function (DUF498/DUF598) [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 144..149
NoneNo IPR availablePANTHERPTHR21192:SF4BNAC04G03830D PROTEINcoord: 1..61
NoneNo IPR availablePANTHERPTHR21192:SF4BNAC04G03830D PROTEINcoord: 89..146
IPR036748MTH938-like superfamilyGENE3D3.40.1230.10coord: 87..141
e-value: 4.5E-7
score: 31.5
IPR036748MTH938-like superfamilySUPERFAMILY64076MTH938-likecoord: 89..137
IPR007523NDUFAF3/Mth938 domain-containing proteinPANTHERPTHR21192NUCLEAR PROTEIN E3-3coord: 89..146
coord: 1..61

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy6G015880.2CsGy6G015880.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0070919 production of siRNA involved in gene silencing by small RNA
biological_process GO:0030422 production of siRNA involved in RNA interference
biological_process GO:0001172 transcription, RNA-templated
cellular_component GO:0016020 membrane
cellular_component GO:0005739 mitochondrion
cellular_component GO:0031380 nuclear RNA-directed RNA polymerase complex
molecular_function GO:0003723 RNA binding
molecular_function GO:0003968 RNA-directed 5'-3' RNA polymerase activity