CsGy6G015820 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G015820
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr6: 14841521 .. 14842284 (-)
RNA-Seq Expression	CsGy6G015820
Synteny	CsGy6G015820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTATCACTTTTACAACTTTCTTTGTTTGAAGACCCAAGTAGAGTTAATCAAACACCAAAGGCCCCTCAAAGAGCCCCAAAGCCAAAACCCACATTTTCTACCATCTTTATTCTCTCTCCTTTTGTTCTTCCTTTCTTTTTCCTCCATCAAACAACTAAAAACCAATTCTTCTTCTTTTTCTTCTTCTTCTTCTTCTTGTCAGAGAAATGCAGTCTAAGATTGGATCTCAAGGTCTTCCTCTCTGTATTTCAGCCTTCACTCTCTCAAATCATTCCCTCTCTACTCAGTATTTCCCCTTCTCTAAACCAACTTTTCTCTTTCTCTTAACCCATAATACACTCCTATTATCACGTTGCTCTGTTTTTTGAGTTGCAGGATAGCAGATCATGATCGAAGAAGGGAAGCCATGAAGACGAGAACGAAAAGATCAAGCAACATGAAGCACAGATTATTGGAAGCGATTAGAGAAGGAGATCTTGAGGATTTCGTCAATGAAAACGACTTAATGATTTGTGCTGCAAAAGCTGCTTAGATTAGGAAAACAGAGTATCCATGATCTGGGTTTGGATTTGATATATGTTGTTAATTTTGGTATGGGTTTGTTTTTTTTTTATATGCATTGTTGTTGTTTGATATGATATGGGATTTGTTTTGTTTCATGTACCATGTTAAGTGAGATTGGGAAAAAAAAATTGACTGATTATGAATGGGAATCTAGAAAAATTCAAGAACTTGTTTGTCATTTAGTACAAACTTCTTTAT

mRNA sequence

TTTTATCACTTTTACAACTTTCTTTGTTTGAAGACCCAAGTAGAGTTAATCAAACACCAAAGGCCCCTCAAAGAGCCCCAAAGCCAAAACCCACATTTTCTACCATCTTTATTCTCTCTCCTTTTGTTCTTCCTTTCTTTTTCCTCCATCAAACAACTAAAAACCAATTCTTCTTCTTTTTCTTCTTCTTCTTCTTCTTGTCAGAGAAATGCAGTCTAAGATTGGATCTCAAGGTCTTCCTCTCTGTATTTCAGCCTTCACTCTCTCAAATCATTCCCTCTCTACTCAGATAGCAGATCATGATCGAAGAAGGGAAGCCATGAAGACGAGAACGAAAAGATCAAGCAACATGAAGCACAGATTATTGGAAGCGATTAGAGAAGGAGATCTTGAGGATTTCGTCAATGAAAACGACTTAATGATTTGTGCTGCAAAAGCTGCTTAGATTAGGAAAACAGAGTATCCATGATCTGGGTTTGGATTTGATATATGTTGTTAATTTTGGTATGGGTTTGTTTTTTTTTTATATGCATTGTTGTTGTTTGATATGATATGGGATTTGTTTTGTTTCATGTACCATGTTAAGTGAGATTGGGAAAAAAAAATTGACTGATTATGAATGGGAATCTAGAAAAATTCAAGAACTTGTTTGTCATTTAGTACAAACTTCTTTAT

Coding sequence (CDS)

ATGCAGTCTAAGATTGGATCTCAAGGTCTTCCTCTCTGTATTTCAGCCTTCACTCTCTCAAATCATTCCCTCTCTACTCAGATAGCAGATCATGATCGAAGAAGGGAAGCCATGAAGACGAGAACGAAAAGATCAAGCAACATGAAGCACAGATTATTGGAAGCGATTAGAGAAGGAGATCTTGAGGATTTCGTCAATGAAAACGACTTAATGATTTGTGCTGCAAAAGCTGCTTAG

Protein sequence

MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTKRSSNMKHRLLEAIREGDLEDFVNENDLMICAAKAA*

Homology

[Close]

BLAST of CsGy6G015820 vs. NCBI nr
Match: KGN47309.1 (hypothetical protein Csa_022984 [Cucumis sativus])

HSP 1 Score: 152 bits (383), Expect = 3.64e-46
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTKRSSNMKHRLLEAIREGD 60
          MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTKRSSNMKHRLLEAIREGD
Sbjct: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTKRSSNMKHRLLEAIREGD 60

Query: 61 LEDFVNENDLMICAAKAA 78
          LEDFVNENDLMICAAKAA
Sbjct: 61 LEDFVNENDLMICAAKAA 78

[Close]

BLAST of CsGy6G015820 vs. NCBI nr
Match: KAA0035320.1 (hypothetical protein E6C27_scaffold228G001200 [Cucumis melo var. makuwa] >TYK14318.1 hypothetical protein E5676_scaffold84G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 141 bits (355), Expect = 6.83e-42
Identity = 72/78 (92.31%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTKRSSNMKHRLLEAIREGD 60
          MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRT+RS+NMK+R LEAIREGD
Sbjct: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTQRSNNMKYRYLEAIREGD 60

Query: 61 LEDFVNENDLMICAAKAA 78
          LEDFVNE D MICAAKAA
Sbjct: 61 LEDFVNETDFMICAAKAA 78

[Close]

BLAST of CsGy6G015820 vs. NCBI nr
Match: XP_023006923.1 (uncharacterized protein LOC111499567 [Cucurbita maxima])

HSP 1 Score: 67.0 bits (162), Expect = 1.96e-12
Identity = 40/83 (48.19%), Postives = 54/83 (65.06%), Query Frame = 0


Query: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTKRSSN-----MKHRLLEA 60
          M SK+ S GLPLC+S F+LS+ SLST++ DHDRRREAM+ R   S++         +++A
Sbjct: 1  MPSKLVSPGLPLCLSGFSLSHRSLSTEMEDHDRRREAMRRRRSSSADAGGIGFTRYIIQA 60

Query: 61 IREGDLEDFVNENDLMICAAKAA 78
          I +GDL D   +  L   AAKAA
Sbjct: 61 IGDGDLHDLCEKTKLT-SAAKAA 82

[Close]

BLAST of CsGy6G015820 vs. NCBI nr
Match: KAG6605527.1 (hypothetical protein SDJN03_02844, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035464.1 hypothetical protein SDJN02_02260 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 63.9 bits (154), Expect = 3.22e-11
Identity = 38/83 (45.78%), Postives = 53/83 (63.86%), Query Frame = 0


Query: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTKRSSN-----MKHRLLEA 60
          M SK+ S GLPLC+S F+LS+  L+T++ DHDRRREAM+ R   S++         +++A
Sbjct: 1  MPSKLVSPGLPLCLSGFSLSHRPLTTEMEDHDRRREAMRRRRSSSADTGGIGFTRYIIQA 60

Query: 61 IREGDLEDFVNENDLMICAAKAA 78
          I +GDL D   +  L   AAKAA
Sbjct: 61 IGDGDLHDLCEKTKLT-SAAKAA 82

[Close]

BLAST of CsGy6G015820 vs. NCBI nr
Match: XP_034687221.1 (uncharacterized protein LOC117915698 [Vitis riparia] >CBI16279.3 unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 55.1 bits (131), Expect = 1.25e-07
Identity = 35/86 (40.70%), Postives = 49/86 (56.98%), Query Frame = 0


Query: 6  GSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTKRSSNMKH------------RLL 65
          GS GLPLC+S  T   H++S ++ADHDRRREAMK +  ++    H            R +
Sbjct: 8  GSYGLPLCVSGIT-HRHTVSDEMADHDRRREAMKRKISQARESVHTNQEMGIGRNYGREV 67

Query: 66 EAIREGDL-EDFVNENDLMICAAKAA 78
          E I+EG++ ED  +    + C AKAA
Sbjct: 68 EQIKEGEVDEDHDHYRPCLACTAKAA 92

[Close]

BLAST of CsGy6G015820 vs. ExPASy TrEMBL
Match: A0A0A0KEP9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G290900 PE=4 SV=1)

HSP 1 Score: 152 bits (383), Expect = 1.76e-46
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTKRSSNMKHRLLEAIREGD 60
          MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTKRSSNMKHRLLEAIREGD
Sbjct: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTKRSSNMKHRLLEAIREGD 60

Query: 61 LEDFVNENDLMICAAKAA 78
          LEDFVNENDLMICAAKAA
Sbjct: 61 LEDFVNENDLMICAAKAA 78

[Close]

BLAST of CsGy6G015820 vs. ExPASy TrEMBL
Match: A0A5D3CSY7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84G00460 PE=4 SV=1)

HSP 1 Score: 141 bits (355), Expect = 3.31e-42
Identity = 72/78 (92.31%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTKRSSNMKHRLLEAIREGD 60
          MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRT+RS+NMK+R LEAIREGD
Sbjct: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTQRSNNMKYRYLEAIREGD 60

Query: 61 LEDFVNENDLMICAAKAA 78
          LEDFVNE D MICAAKAA
Sbjct: 61 LEDFVNETDFMICAAKAA 78

[Close]

BLAST of CsGy6G015820 vs. ExPASy TrEMBL
Match: A0A6J1L6A3 (uncharacterized protein LOC111499567 OS=Cucurbita maxima OX=3661 GN=LOC111499567 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 9.50e-13
Identity = 40/83 (48.19%), Postives = 54/83 (65.06%), Query Frame = 0


Query: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTKRSSN-----MKHRLLEA 60
          M SK+ S GLPLC+S F+LS+ SLST++ DHDRRREAM+ R   S++         +++A
Sbjct: 1  MPSKLVSPGLPLCLSGFSLSHRSLSTEMEDHDRRREAMRRRRSSSADAGGIGFTRYIIQA 60

Query: 61 IREGDLEDFVNENDLMICAAKAA 78
          I +GDL D   +  L   AAKAA
Sbjct: 61 IGDGDLHDLCEKTKLT-SAAKAA 82

[Close]

BLAST of CsGy6G015820 vs. ExPASy TrEMBL
Match: D7SKV1 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g03210 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 6.04e-08
Identity = 35/86 (40.70%), Postives = 49/86 (56.98%), Query Frame = 0


Query: 6  GSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTKRSSNMKH------------RLL 65
          GS GLPLC+S  T   H++S ++ADHDRRREAMK +  ++    H            R +
Sbjct: 8  GSYGLPLCVSGIT-HRHTVSDEMADHDRRREAMKRKISQARESVHTNQEMGIGRNYGREV 67

Query: 66 EAIREGDL-EDFVNENDLMICAAKAA 78
          E I+EG++ ED  +    + C AKAA
Sbjct: 68 EQIKEGEVDEDHDHYRPCLACTAKAA 92

[Close]

BLAST of CsGy6G015820 vs. ExPASy TrEMBL
Match: A0A164Y134 (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_017079 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 6.40e-06
Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 0


Query: 7  SQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTKRSSNMKHRLLEAIREGDLEDFVN 66
          S GLPLC+S FT S+ +LS +IADHD RREAMK +  +S       LEA+  G    FV+
Sbjct: 11 SSGLPLCLSGFT-SSLTLSQEIADHDLRREAMKKQKTQSRRASLTDLEALVNG--LSFVS 70

Query: 67 ----ENDLMICAAKAA 78
              +  L+ C AKAA
Sbjct: 71 LQQQQQQLLPCPAKAA 83

The following BLAST results are available for this feature:

BLAST of CsGy6G015820 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy6G015820 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47309.1	3.64e-46	100.00	hypothetical protein Csa_022984 [Cucumis sativus]	[more]
KAA0035320.1	6.83e-42	92.31	hypothetical protein E6C27_scaffold228G001200 [Cucumis melo var. makuwa] >TYK143...	[more]
XP_023006923.1	1.96e-12	48.19	uncharacterized protein LOC111499567 [Cucurbita maxima]	[more]
KAG6605527.1	3.22e-11	45.78	hypothetical protein SDJN03_02844, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_034687221.1	1.25e-07	40.70	uncharacterized protein LOC117915698 [Vitis riparia] >CBI16279.3 unnamed protein...	[more]

BLAST of CsGy6G015820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEP9	1.76e-46	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G290900 PE=4 SV=1	[more]
A0A5D3CSY7	3.31e-42	92.31	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1L6A3	9.50e-13	48.19	uncharacterized protein LOC111499567 OS=Cucurbita maxima OX=3661 GN=LOC111499567...	[more]
D7SKV1	6.04e-08	40.70	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g03210 PE=4 SV=...	[more]
A0A164Y134	6.40e-06	47.37	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_017079 ...	[more]

BLAST of CsGy6G015820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G015820.2	CsGy6G015820.2	mRNA