CsGy6G015590 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G015590
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	protein HAPLESS 2
Location	Gy14Chr6: 14506007 .. 14507264 (-)
RNA-Seq Expression	CsGy6G015590
Synteny	CsGy6G015590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTTCTTAATGGGGTTTGATTTTTATTGCTTCGTTGGTGTTTTTCTGGTGTATTCTGCGGAAGTGGAGAAAGATGACTTGGATGGACCTAAAGATCTCGGTCGATGTTGCAAGGTCAGTACGATTCCTCGTCATTCTTCTTATGCTTTCTATATAGGGGTTTCTGTGGTGTATGTGGAATTACGTGTCGGTCATGGCTGGAGGTTGGTTTGGGTTATATTGAGATTGAGATCTTTGTGCTTTTTGACTTAATATTTTTCCTTTTTGTACATTGTTAATAGAACTAACTATTGTCTATTGAGATATACTCTTGAGCTTTCAATACCTTATACTACCTGCTTGTGTATGAAAATGAAAAAAACCAATTGTAATTTGGGGGAACAGTGAGGAAGATGGTAATGATTTTACTAGGTGGTGCTGGTTTTGTTTTTTGGAGAATTTGAAGAAGGCCAACTGACTTGGGTTTAGAATTATTTAGGAGTTTGTTGGGAGTGTTTCCAGAATGTGACTTTTTAGTGTTGTGTTCAATTTTAAAAGGTGTTTGAAACATATTTATTCATGGTGAAGATGAAGATTTAAATGTTCTAATGTGAATGCTTGTTGTTTTTGTGTAGGCTATTTTTCCTCGCATATTTGGCCGAGGCATCATTTATCATTTTGTTTCCTTGTATCTAATTTTAATAATATGTTTGTGGTTATTGTGGTAAAGTGCTAGTATGGATGTTTCATGTTTAAGAAGTTTGATACTTGTATATATTTTATGTGTTTGAACATAATATGCTCAGGATTTTTCATGTAAACCTGAAGAATTTTATGTTACAACTCGCAAATGTGAGTCGAATGCTAGTGCGAGAGTGGTACAAATATGTGAAAGGTAACATAAGCCAGTCTTTTTAACCTCCACACAACCCCAAAGATATTTGATTTACAATAAATTTGTTTGATGTTTTCTTATAGGTTAAGAGATGAAAGTGGACATATAATTATGAGCACTCAAGTACCAATTTGAGAAAAGCTTCTATTGTCTTGACTTCCTTTGGTTATATTGACTTGATCTTCAGTCTTCACATTCATTTTGATCTTGTTATTGATTCATTCTTCTTTGTCTCTTGTTAAATCTGTTTAGCCTATATGTTGTCCTTGTGGAGCAAAGCGTCGAACAGTGGAAGTGTCCATGGGTCCTGAAAATAGAACAGTGTTGTCAAATGATAACTTCTTACGGGCTAATCTTAATCTTCATTCCAGCACTGTTTGA

mRNA sequence

ATGGCGTTCTTAATGGGGTTTGATTTTTATTGCTTCGTTGGTGTTTTTCTGGTGTATTCTGCGGAAGTGGAGAAAGATGACTTGGATGGACCTAAAGATCTCGGTCGATGTTGCAAGGATTTTTCATGTAAACCTGAAGAATTTTATGTTACAACTCGCAAATGTGAGTCGAATGCTAGTGCGAGAGTGGTACAAATATGTGAAAGGTTAAGAGATGAAAGTGGACATATAATTATGAGCACTCAACCTATATGTTGTCCTTGTGGAGCAAAGCGTCGAACAGTGGAAGTGTCCATGGGTCCTGAAAATAGAACAGTGTTGTCAAATGATAACTTCTTACGGGCTAATCTTAATCTTCATTCCAGCACTGTTTGA

Coding sequence (CDS)

ATGGCGTTCTTAATGGGGTTTGATTTTTATTGCTTCGTTGGTGTTTTTCTGGTGTATTCTGCGGAAGTGGAGAAAGATGACTTGGATGGACCTAAAGATCTCGGTCGATGTTGCAAGGATTTTTCATGTAAACCTGAAGAATTTTATGTTACAACTCGCAAATGTGAGTCGAATGCTAGTGCGAGAGTGGTACAAATATGTGAAAGGTTAAGAGATGAAAGTGGACATATAATTATGAGCACTCAACCTATATGTTGTCCTTGTGGAGCAAAGCGTCGAACAGTGGAAGTGTCCATGGGTCCTGAAAATAGAACAGTGTTGTCAAATGATAACTTCTTACGGGCTAATCTTAATCTTCATTCCAGCACTGTTTGA

Protein sequence

MAFLMGFDFYCFVGVFLVYSAEVEKDDLDGPKDLGRCCKDFSCKPEEFYVTTRKCESNASARVVQICERLRDESGHIIMSTQPICCPCGAKRRTVEVSMGPENRTVLSNDNFLRANLNLHSSTV*

Homology

[Close]

BLAST of CsGy6G015590 vs. ExPASy Swiss-Prot
Match: F4JP36 (Protein HAPLESS 2 OS=Arabidopsis thaliana OX=3702 GN=HAP2 PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.2e-17
Identity = 49/132 (37.12%), Postives = 62/132 (46.97%), Query Frame = 0


Query: 39  KDFSCKPEEFYVTTRKCESNASARVVQICERLRDESGHIIMSTQPICCPCGAKR------ 98
           +D   KP+E++VTTRKCE +A   +VQICERLRDE G+++  TQPICCPCG +R      
Sbjct: 109 RDVPYKPQEYHVTTRKCEHDAGPDIVQICERLRDEKGNVLEQTQPICCPCGPQRRMPSSC 168

Query: 99  -----------------------------------------------RTVEVSMGPENRT 118
                                                          R  EV +GPENRT
Sbjct: 169 GDIFDKMIKGKANTAHCLRFPGDWFHVFGIGQRSLGFSVRVELKTGTRVSEVIIGPENRT 228

[Close]

BLAST of CsGy6G015590 vs. ExPASy Swiss-Prot
Match: B9G4M9 (Protein HAPLESS 2-B OS=Oryza sativa subsp. japonica OX=39947 GN=HAP2B PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-14
Identity = 49/132 (37.12%), Postives = 58/132 (43.94%), Query Frame = 0


Query: 39  KDFSCKPEEFYVTTRKCESNASARVVQICERLRDESGHIIMSTQPICCPCGAKRRT---- 98
           +D + KPEE +V TRKCE  A A VV+ CERLRDE G II  T+P+CCPCG  RR     
Sbjct: 118 RDVAYKPEEKFVKTRKCEPEAGANVVKSCERLRDEKGSIIEHTEPVCCPCGPHRRVPSSC 177

Query: 99  -------------------------------------------------VEVSMGPENRT 118
                                                             EV +GPENRT
Sbjct: 178 GNILDKVAKGKANTAHCLRFPDDWFHVFDIGRRSLWFSIRVQVKKGSSESEVIVGPENRT 237

[Close]

BLAST of CsGy6G015590 vs. ExPASy Swiss-Prot
Match: Q5W6B9 (Protein HAPLESS 2-A OS=Oryza sativa subsp. japonica OX=39947 GN=HAP2A PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.3e-12
Identity = 43/131 (32.82%), Postives = 56/131 (42.75%), Query Frame = 0


Query: 39  KDFSCKPEEFYVTTRKCESNASARVVQICERLRDESGHIIMSTQPICCPCGAKR------ 98
           +D + +P+E YV T KCE  A A+VV  CERL DE G++I  T+PICCPCG  R      
Sbjct: 113 RDVAYRPDEKYVKTHKCEPYAGAKVVGECERLWDEKGNVIKQTEPICCPCGPHRVQSKCG 172

Query: 99  ----------------------------------------------RTVEVSMGPENRTV 118
                                                            +V +GPEN+TV
Sbjct: 173 DIWSKLTKGKANTAHCVRFPGDWFHVFGIGAWSLRFSIRVQVKKGSSVWDVVVGPENKTV 232

[Close]

BLAST of CsGy6G015590 vs. NCBI nr
Match: KAE8647041.1 (hypothetical protein Csa_022982 [Cucumis sativus])

HSP 1 Score: 252 bits (644), Expect = 1.57e-84
Identity = 121/124 (97.58%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 1   MAFLMGFDFYCFVGVFLVYSAEVEKDDLDGPKDLGRCCKDFSCKPEEFYVTTRKCESNAS 60
           MAFLMGFDFYCF GVFLVYSAEVEKDDLDGPKDLGRCCKD SCKPEE+YVTTRKCESNAS
Sbjct: 1   MAFLMGFDFYCFFGVFLVYSAEVEKDDLDGPKDLGRCCKDVSCKPEEYYVTTRKCESNAS 60

Query: 61  ARVVQICERLRDESGHIIMSTQPICCPCGAKRRTVEVSMGPENRTVLSNDNFLRANLNLH 120
           ARVVQICERLRDESGHIIMSTQPICCPCGAKRRTVEVSMGPENRTVLSNDNFLRANLNLH
Sbjct: 61  ARVVQICERLRDESGHIIMSTQPICCPCGAKRRTVEVSMGPENRTVLSNDNFLRANLNLH 120

Query: 121 SSTV 124
           SSTV
Sbjct: 121 SSTV 124

[Close]

BLAST of CsGy6G015590 vs. NCBI nr
Match: XP_008437220.1 (PREDICTED: protein HAPLESS 2 isoform X3 [Cucumis melo])

HSP 1 Score: 116 bits (290), Expect = 2.25e-27
Identity = 67/132 (50.76%), Postives = 71/132 (53.79%), Query Frame = 0


Query: 39  KDFSCKPEEFYVTTRKCESNASARVVQICERLRDESGHIIMSTQPICCPCGAKRR----- 98
           +D   KPEEFYVTTRKCE +ASARVVQICERLRDESGHII STQPICCPCGAKRR     
Sbjct: 107 RDVPYKPEEFYVTTRKCEPDASARVVQICERLRDESGHIIQSTQPICCPCGAKRRMPTSC 166

Query: 99  ------------------------------------------------TVEVSMGPENRT 117
                                                             EVS+GPENRT
Sbjct: 167 GNFFDKMIKGKANTAHCLRFPGDWFHVFSIGQWTLGFSVQIHVKSGSKVSEVSVGPENRT 226

[Close]

BLAST of CsGy6G015590 vs. NCBI nr
Match: XP_008437219.1 (PREDICTED: protein HAPLESS 2 isoform X2 [Cucumis melo])

HSP 1 Score: 116 bits (290), Expect = 3.01e-27
Identity = 67/132 (50.76%), Postives = 71/132 (53.79%), Query Frame = 0


Query: 39  KDFSCKPEEFYVTTRKCESNASARVVQICERLRDESGHIIMSTQPICCPCGAKRR----- 98
           +D   KPEEFYVTTRKCE +ASARVVQICERLRDESGHII STQPICCPCGAKRR     
Sbjct: 107 RDVPYKPEEFYVTTRKCEPDASARVVQICERLRDESGHIIQSTQPICCPCGAKRRMPTSC 166

Query: 99  ------------------------------------------------TVEVSMGPENRT 117
                                                             EVS+GPENRT
Sbjct: 167 GNFFDKMIKGKANTAHCLRFPGDWFHVFSIGQWTLGFSVQIHVKSGSKVSEVSVGPENRT 226

[Close]

BLAST of CsGy6G015590 vs. NCBI nr
Match: XP_008437218.1 (PREDICTED: protein HAPLESS 2 isoform X1 [Cucumis melo])

HSP 1 Score: 116 bits (290), Expect = 3.06e-27
Identity = 67/132 (50.76%), Postives = 71/132 (53.79%), Query Frame = 0


Query: 39  KDFSCKPEEFYVTTRKCESNASARVVQICERLRDESGHIIMSTQPICCPCGAKRR----- 98
           +D   KPEEFYVTTRKCE +ASARVVQICERLRDESGHII STQPICCPCGAKRR     
Sbjct: 107 RDVPYKPEEFYVTTRKCEPDASARVVQICERLRDESGHIIQSTQPICCPCGAKRRMPTSC 166

Query: 99  ------------------------------------------------TVEVSMGPENRT 117
                                                             EVS+GPENRT
Sbjct: 167 GNFFDKMIKGKANTAHCLRFPGDWFHVFSIGQWTLGFSVQIHVKSGSKVSEVSVGPENRT 226

[Close]

BLAST of CsGy6G015590 vs. NCBI nr
Match: XP_004143990.1 (protein HAPLESS 2 [Cucumis sativus])

HSP 1 Score: 116 bits (290), Expect = 3.08e-27
Identity = 67/132 (50.76%), Postives = 72/132 (54.55%), Query Frame = 0


Query: 39  KDFSCKPEEFYVTTRKCESNASARVVQICERLRDESGHIIMSTQPICCPCGAKRR----- 98
           +D   KPEEFYV TRKCE +ASARVVQICERLRDESGHII+STQPICCPCGAKRR     
Sbjct: 107 RDVPYKPEEFYVPTRKCEPDASARVVQICERLRDESGHIILSTQPICCPCGAKRRMPTSC 166

Query: 99  ------------------------------------------------TVEVSMGPENRT 117
                                                             EVS+GPENRT
Sbjct: 167 GNFFDKMIKGKANTAHCLRFPGDWFHVFSIGQWTLGFSVQIHVKSGSKVSEVSVGPENRT 226

[Close]

BLAST of CsGy6G015590 vs. ExPASy TrEMBL
Match: A0A0A0KQY8 (HAP2-GCS1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G155520 PE=3 SV=1)

HSP 1 Score: 118 bits (295), Expect = 3.09e-28
Identity = 67/127 (52.76%), Postives = 72/127 (56.69%), Query Frame = 0


Query: 39  KDFSCKPEEFYVTTRKCESNASARVVQICERLRDESGHIIMSTQPICCPCGAKRR----- 98
           +D   KPEEFYV TRKCE +ASARVVQICERLRDESGHII+STQPICCPCGAKRR     
Sbjct: 107 RDVPYKPEEFYVPTRKCEPDASARVVQICERLRDESGHIILSTQPICCPCGAKRRMPTSC 166

Query: 99  -------------------------------------------TVEVSMGPENRTVLSND 117
                                                        EVS+GPENRTV+SND
Sbjct: 167 GNFFDKMIKGKANTAHCLRFPGDCIGQWTLGFSVQIHVKSGSKVSEVSVGPENRTVVSND 226

[Close]

BLAST of CsGy6G015590 vs. ExPASy TrEMBL
Match: A0A1S3AU32 (protein HAPLESS 2 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103482714 PE=3 SV=1)

HSP 1 Score: 116 bits (290), Expect = 1.09e-27
Identity = 67/132 (50.76%), Postives = 71/132 (53.79%), Query Frame = 0


Query: 39  KDFSCKPEEFYVTTRKCESNASARVVQICERLRDESGHIIMSTQPICCPCGAKRR----- 98
           +D   KPEEFYVTTRKCE +ASARVVQICERLRDESGHII STQPICCPCGAKRR     
Sbjct: 107 RDVPYKPEEFYVTTRKCEPDASARVVQICERLRDESGHIIQSTQPICCPCGAKRRMPTSC 166

Query: 99  ------------------------------------------------TVEVSMGPENRT 117
                                                             EVS+GPENRT
Sbjct: 167 GNFFDKMIKGKANTAHCLRFPGDWFHVFSIGQWTLGFSVQIHVKSGSKVSEVSVGPENRT 226

[Close]

BLAST of CsGy6G015590 vs. ExPASy TrEMBL
Match: A0A1S3ATH0 (protein HAPLESS 2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103482714 PE=3 SV=1)

HSP 1 Score: 116 bits (290), Expect = 1.46e-27
Identity = 67/132 (50.76%), Postives = 71/132 (53.79%), Query Frame = 0


Query: 39  KDFSCKPEEFYVTTRKCESNASARVVQICERLRDESGHIIMSTQPICCPCGAKRR----- 98
           +D   KPEEFYVTTRKCE +ASARVVQICERLRDESGHII STQPICCPCGAKRR     
Sbjct: 107 RDVPYKPEEFYVTTRKCEPDASARVVQICERLRDESGHIIQSTQPICCPCGAKRRMPTSC 166

Query: 99  ------------------------------------------------TVEVSMGPENRT 117
                                                             EVS+GPENRT
Sbjct: 167 GNFFDKMIKGKANTAHCLRFPGDWFHVFSIGQWTLGFSVQIHVKSGSKVSEVSVGPENRT 226

[Close]

BLAST of CsGy6G015590 vs. ExPASy TrEMBL
Match: A0A1S3ATM0 (protein HAPLESS 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103482714 PE=3 SV=1)

HSP 1 Score: 116 bits (290), Expect = 1.48e-27
Identity = 67/132 (50.76%), Postives = 71/132 (53.79%), Query Frame = 0


Query: 39  KDFSCKPEEFYVTTRKCESNASARVVQICERLRDESGHIIMSTQPICCPCGAKRR----- 98
           +D   KPEEFYVTTRKCE +ASARVVQICERLRDESGHII STQPICCPCGAKRR     
Sbjct: 107 RDVPYKPEEFYVTTRKCEPDASARVVQICERLRDESGHIIQSTQPICCPCGAKRRMPTSC 166

Query: 99  ------------------------------------------------TVEVSMGPENRT 117
                                                             EVS+GPENRT
Sbjct: 167 GNFFDKMIKGKANTAHCLRFPGDWFHVFSIGQWTLGFSVQIHVKSGSKVSEVSVGPENRT 226

[Close]

BLAST of CsGy6G015590 vs. ExPASy TrEMBL
Match: A0A5A7THM3 (Protein HAPLESS 2 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G002960 PE=3 SV=1)

HSP 1 Score: 116 bits (290), Expect = 1.54e-27
Identity = 67/132 (50.76%), Postives = 71/132 (53.79%), Query Frame = 0


Query: 39  KDFSCKPEEFYVTTRKCESNASARVVQICERLRDESGHIIMSTQPICCPCGAKRR----- 98
           +D   KPEEFYVTTRKCE +ASARVVQICERLRDESGHII STQPICCPCGAKRR     
Sbjct: 107 RDVPYKPEEFYVTTRKCEPDASARVVQICERLRDESGHIIQSTQPICCPCGAKRRMPTSC 166

Query: 99  ------------------------------------------------TVEVSMGPENRT 117
                                                             EVS+GPENRT
Sbjct: 167 GNFFDKMIKGKANTAHCLRFPGDWFHVFSIGQWTLGFSVQIHVKSGSKVSEVSVGPENRT 226

[Close]

BLAST of CsGy6G015590 vs. TAIR 10
Match: AT4G11720.1 (hapless 2 )

HSP 1 Score: 89.4 bits (220), Expect = 2.3e-18
Identity = 49/132 (37.12%), Postives = 62/132 (46.97%), Query Frame = 0


Query: 39  KDFSCKPEEFYVTTRKCESNASARVVQICERLRDESGHIIMSTQPICCPCGAKR------ 98
           +D   KP+E++VTTRKCE +A   +VQICERLRDE G+++  TQPICCPCG +R      
Sbjct: 109 RDVPYKPQEYHVTTRKCEHDAGPDIVQICERLRDEKGNVLEQTQPICCPCGPQRRMPSSC 168

Query: 99  -----------------------------------------------RTVEVSMGPENRT 118
                                                          R  EV +GPENRT
Sbjct: 169 GDIFDKMIKGKANTAHCLRFPGDWFHVFGIGQRSLGFSVRVELKTGTRVSEVIIGPENRT 228

The following BLAST results are available for this feature:

BLAST of CsGy6G015590 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JP36	3.2e-17	37.12	Protein HAPLESS 2 OS=Arabidopsis thaliana OX=3702 GN=HAP2 PE=1 SV=1	[more]
B9G4M9	1.1e-14	37.12	Protein HAPLESS 2-B OS=Oryza sativa subsp. japonica OX=39947 GN=HAP2B PE=3 SV=1	[more]
Q5W6B9	5.3e-12	32.82	Protein HAPLESS 2-A OS=Oryza sativa subsp. japonica OX=39947 GN=HAP2A PE=2 SV=1	[more]

BLAST of CsGy6G015590 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647041.1	1.57e-84	97.58	hypothetical protein Csa_022982 [Cucumis sativus]	[more]
XP_008437220.1	2.25e-27	50.76	PREDICTED: protein HAPLESS 2 isoform X3 [Cucumis melo]	[more]
XP_008437219.1	3.01e-27	50.76	PREDICTED: protein HAPLESS 2 isoform X2 [Cucumis melo]	[more]
XP_008437218.1	3.06e-27	50.76	PREDICTED: protein HAPLESS 2 isoform X1 [Cucumis melo]	[more]
XP_004143990.1	3.08e-27	50.76	protein HAPLESS 2 [Cucumis sativus]	[more]

BLAST of CsGy6G015590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQY8	3.09e-28	52.76	HAP2-GCS1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G155520 P...	[more]
A0A1S3AU32	1.09e-27	50.76	protein HAPLESS 2 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103482714 PE=3 SV=1	[more]
A0A1S3ATH0	1.46e-27	50.76	protein HAPLESS 2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103482714 PE=3 SV=1	[more]
A0A1S3ATM0	1.48e-27	50.76	protein HAPLESS 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103482714 PE=3 SV=1	[more]
A0A5A7THM3	1.54e-27	50.76	Protein HAPLESS 2 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]

BLAST of CsGy6G015590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G11720.1	2.3e-18	37.12	hapless 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040326	HAP2/GCS1	PANTHER	PTHR31764	PROTEIN HAPLESS 2	coord: 37..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G015590.2	CsGy6G015590.2	mRNA