CsGy6G015542 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G015542
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Pol protein
Location	Gy14Chr6: 14387149 .. 14387538 (-)
RNA-Seq Expression	CsGy6G015542
Synteny	CsGy6G015542

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGGTGTTATGCGTTTTGAGAAGAAAGGGAAGTTAAGTCCTTGTTTTGTTGGACCATTTGAGATCTTAGAGAGGGTTGGTGTTGTGGCGTATCGCTTGGCATTACCACCATCTCTCTCTGTAGTTCATAATGTTTTCCATGTTTCGATGTTGAGGAAGTATGTGGCCGATACATCTCATGTAGTGGACTATGAACCCTTGGAGATTGATGAGCATTTGAGCTATGTAGAACAACCTGTGGAGATTCTAGCCAGAGAGGTAAAGATGCTTCGTAATAGAAGCATTCCATTAGTAAAGGTTTTGTGGCGGAATCATCGAATTGAAGAGGCGACATGGGAGCGAGAGGAAGAGATGAGGACTCGTTATCCAGAGTTATTTCAGGATTAG

mRNA sequence

ATGAAGGGTGTTATGCGTTTTGAGAAGAAAGGGAAGTTAAGTCCTTGTTTTGTTGGACCATTTGAGATCTTAGAGAGGGTTGGTGTTGTGGCGTATCGCTTGGCATTACCACCATCTCTCTCTGTAGTTCATAATGTTTTCCATGTTTCGATGTTGAGGAAGTATGTGGCCGATACATCTCATGTAGTGGACTATGAACCCTTGGAGATTGATGAGCATTTGAGCTATGTAGAACAACCTGTGGAGATTCTAGCCAGAGAGGTAAAGATGCTTCGTAATAGAAGCATTCCATTAGTAAAGGTTTTGTGGCGGAATCATCGAATTGAAGAGGCGACATGGGAGCGAGAGGAAGAGATGAGGACTCGTTATCCAGAGTTATTTCAGGATTAG

Coding sequence (CDS)

ATGAAGGGTGTTATGCGTTTTGAGAAGAAAGGGAAGTTAAGTCCTTGTTTTGTTGGACCATTTGAGATCTTAGAGAGGGTTGGTGTTGTGGCGTATCGCTTGGCATTACCACCATCTCTCTCTGTAGTTCATAATGTTTTCCATGTTTCGATGTTGAGGAAGTATGTGGCCGATACATCTCATGTAGTGGACTATGAACCCTTGGAGATTGATGAGCATTTGAGCTATGTAGAACAACCTGTGGAGATTCTAGCCAGAGAGGTAAAGATGCTTCGTAATAGAAGCATTCCATTAGTAAAGGTTTTGTGGCGGAATCATCGAATTGAAGAGGCGACATGGGAGCGAGAGGAAGAGATGAGGACTCGTTATCCAGAGTTATTTCAGGATTAG

Protein sequence

MKGVMRFEKKGKLSPCFVGPFEILERVGVVAYRLALPPSLSVVHNVFHVSMLRKYVADTSHVVDYEPLEIDEHLSYVEQPVEILAREVKMLRNRSIPLVKVLWRNHRIEEATWEREEEMRTRYPELFQD*

Homology

[Close]

BLAST of CsGy6G015542 vs. NCBI nr
Match: XP_031737528.1 (uncharacterized protein LOC116402421 [Cucumis sativus])

HSP 1 Score: 252 bits (644), Expect = 2.28e-84
Identity = 126/129 (97.67%), Postives = 127/129 (98.45%), Query Frame = 0


Query: 1   MKGVMRFEKKGKLSPCFVGPFEILERVGVVAYRLALPPSLSVVHNVFHVSMLRKYVADTS 60
           MKGVMRFEKKGKLSP FVGPFEILERVGVVAYRLALPPSLS VHNVFHVSMLRKYVADTS
Sbjct: 1   MKGVMRFEKKGKLSPRFVGPFEILERVGVVAYRLALPPSLSAVHNVFHVSMLRKYVADTS 60

Query: 61  HVVDYEPLEIDEHLSYVEQPVEILAREVKMLRNRSIPLVKVLWRNHRIEEATWEREEEMR 120
           HVVDYEPLEIDEHLSYVEQPVEILAREVKMLRNRSIPLVKVLW+NHRIEEATWEREEEMR
Sbjct: 61  HVVDYEPLEIDEHLSYVEQPVEILAREVKMLRNRSIPLVKVLWQNHRIEEATWEREEEMR 120

Query: 121 TRYPELFQD 129
           TRYPELFQD
Sbjct: 121 TRYPELFQD 129

[Close]

BLAST of CsGy6G015542 vs. NCBI nr
Match: XP_031740423.1 (uncharacterized protein LOC116403424 [Cucumis sativus] >XP_031745636.1 uncharacterized protein LOC116406055 [Cucumis sativus])

HSP 1 Score: 246 bits (628), Expect = 5.51e-82
Identity = 123/125 (98.40%), Postives = 123/125 (98.40%), Query Frame = 0


Query: 5   MRFEKKGKLSPCFVGPFEILERVGVVAYRLALPPSLSVVHNVFHVSMLRKYVADTSHVVD 64
           MRFEKKGKLSP FVGPFEILERVGVVAYRLALPPSLS VHNVFHVSMLRKYVADTSHVVD
Sbjct: 1   MRFEKKGKLSPRFVGPFEILERVGVVAYRLALPPSLSAVHNVFHVSMLRKYVADTSHVVD 60

Query: 65  YEPLEIDEHLSYVEQPVEILAREVKMLRNRSIPLVKVLWRNHRIEEATWEREEEMRTRYP 124
           YEPLEIDEHLSYVEQPVEILAREVKMLRNRSIPLVKVLWRNHRIEEATWEREEEMRTRYP
Sbjct: 61  YEPLEIDEHLSYVEQPVEILAREVKMLRNRSIPLVKVLWRNHRIEEATWEREEEMRTRYP 120

Query: 125 ELFQD 129
           ELFQD
Sbjct: 121 ELFQD 125

[Close]

BLAST of CsGy6G015542 vs. NCBI nr
Match: XP_031737526.1 (uncharacterized protein LOC116402419 [Cucumis sativus])

HSP 1 Score: 244 bits (624), Expect = 2.24e-81
Identity = 122/125 (97.60%), Postives = 123/125 (98.40%), Query Frame = 0


Query: 5   MRFEKKGKLSPCFVGPFEILERVGVVAYRLALPPSLSVVHNVFHVSMLRKYVADTSHVVD 64
           MRFEKKGKLSP FVGPFEILERVGVVAYRLALPPSLS VHNVFHVSMLRKYVADTSHVVD
Sbjct: 1   MRFEKKGKLSPRFVGPFEILERVGVVAYRLALPPSLSAVHNVFHVSMLRKYVADTSHVVD 60

Query: 65  YEPLEIDEHLSYVEQPVEILAREVKMLRNRSIPLVKVLWRNHRIEEATWEREEEMRTRYP 124
           YEPLEIDEHLSYVEQPVEILAREVKMLRNRSIPLVKVLW+NHRIEEATWEREEEMRTRYP
Sbjct: 61  YEPLEIDEHLSYVEQPVEILAREVKMLRNRSIPLVKVLWQNHRIEEATWEREEEMRTRYP 120

Query: 125 ELFQD 129
           ELFQD
Sbjct: 121 ELFQD 125

[Close]

BLAST of CsGy6G015542 vs. NCBI nr
Match: XP_031742257.1 (uncharacterized protein LOC116404138 [Cucumis sativus])

HSP 1 Score: 241 bits (616), Expect = 3.73e-80
Identity = 121/125 (96.80%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 5   MRFEKKGKLSPCFVGPFEILERVGVVAYRLALPPSLSVVHNVFHVSMLRKYVADTSHVVD 64
           MRFEKKGKLSP FVGPFEILERVGVVAYRLALPPSLS VHNVFHVSMLRKYVADTSHVVD
Sbjct: 1   MRFEKKGKLSPRFVGPFEILERVGVVAYRLALPPSLSAVHNVFHVSMLRKYVADTSHVVD 60

Query: 65  YEPLEIDEHLSYVEQPVEILAREVKMLRNRSIPLVKVLWRNHRIEEATWEREEEMRTRYP 124
           YEPLEIDEHLSYVEQPVEILAREVKMLRNRSIPLVKVLW+NHRIEEATWEREEEMRTRY 
Sbjct: 61  YEPLEIDEHLSYVEQPVEILAREVKMLRNRSIPLVKVLWQNHRIEEATWEREEEMRTRYS 120

Query: 125 ELFQD 129
           ELFQD
Sbjct: 121 ELFQD 125

[Close]

BLAST of CsGy6G015542 vs. NCBI nr
Match: XP_031736735.1 (uncharacterized protein LOC116402077 [Cucumis sativus])

HSP 1 Score: 240 bits (612), Expect = 1.52e-79
Identity = 120/125 (96.00%), Postives = 120/125 (96.00%), Query Frame = 0


Query: 5   MRFEKKGKLSPCFVGPFEILERVGVVAYRLALPPSLSVVHNVFHVSMLRKYVADTSHVVD 64
           MRFEKKGKLSP FVGPFE LERVGVVAYRL LPPSLS VHNVFHVSMLRKYVADTSHVVD
Sbjct: 1   MRFEKKGKLSPRFVGPFESLERVGVVAYRLPLPPSLSAVHNVFHVSMLRKYVADTSHVVD 60

Query: 65  YEPLEIDEHLSYVEQPVEILAREVKMLRNRSIPLVKVLWRNHRIEEATWEREEEMRTRYP 124
           YEPLEIDEHL YVEQPVEILAREVKMLRNRSIPLVKVLWRNHRIEEATWEREEEMRTRYP
Sbjct: 61  YEPLEIDEHLCYVEQPVEILAREVKMLRNRSIPLVKVLWRNHRIEEATWEREEEMRTRYP 120

Query: 125 ELFQD 129
           ELFQD
Sbjct: 121 ELFQD 125

[Close]

BLAST of CsGy6G015542 vs. ExPASy TrEMBL
Match: A0A5D3B9X0 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold282G00370 PE=4 SV=1)

HSP 1 Score: 229 bits (583), Expect = 6.65e-75
Identity = 107/129 (82.95%), Postives = 123/129 (95.35%), Query Frame = 0


Query: 1   MKGVMRFEKKGKLSPCFVGPFEILERVGVVAYRLALPPSLSVVHNVFHVSMLRKYVADTS 60
           MKGV+RFE++GKLSPCFVGPFEILER+G +AYRLALPPSLS+VH+VFHVSMLRKYV D S
Sbjct: 34  MKGVLRFERRGKLSPCFVGPFEILERIGPIAYRLALPPSLSIVHDVFHVSMLRKYVPDPS 93

Query: 61  HVVDYEPLEIDEHLSYVEQPVEILAREVKMLRNRSIPLVKVLWRNHRIEEATWEREEEMR 120
           HVVDY+PLEIDE+LSY EQPVE+LAREVKMLRNR IPLVKVLWRNHR+EEATWERE++MR
Sbjct: 94  HVVDYKPLEIDENLSYTEQPVEVLAREVKMLRNREIPLVKVLWRNHRVEEATWEREDDMR 153

Query: 121 TRYPELFQD 129
           +R PELF++
Sbjct: 154 SRNPELFEE 162

[Close]

BLAST of CsGy6G015542 vs. ExPASy TrEMBL
Match: A0A5A7U2G4 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold32643G00010 PE=4 SV=1)

HSP 1 Score: 228 bits (581), Expect = 1.34e-74
Identity = 109/129 (84.50%), Postives = 122/129 (94.57%), Query Frame = 0


Query: 1   MKGVMRFEKKGKLSPCFVGPFEILERVGVVAYRLALPPSLSVVHNVFHVSMLRKYVADTS 60
           MKGV+RFE++GKLSP FVGPFEILER+G VAYRLALPPSLS VHNVFHVSMLRKYV D S
Sbjct: 34  MKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHNVFHVSMLRKYVPDPS 93

Query: 61  HVVDYEPLEIDEHLSYVEQPVEILAREVKMLRNRSIPLVKVLWRNHRIEEATWEREEEMR 120
           HVVDYEPLEIDE+LSYVEQPVE+LAREVK LRN+ IPLVKVLWRNHR+EEATWERE++MR
Sbjct: 94  HVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKRIPLVKVLWRNHRVEEATWEREDDMR 153

Query: 121 TRYPELFQD 129
           +RYPELF++
Sbjct: 154 SRYPELFEE 162

[Close]

BLAST of CsGy6G015542 vs. ExPASy TrEMBL
Match: A0A5A7V9X5 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4084G00010 PE=4 SV=1)

HSP 1 Score: 226 bits (575), Expect = 3.68e-74
Identity = 108/129 (83.72%), Postives = 121/129 (93.80%), Query Frame = 0


Query: 1   MKGVMRFEKKGKLSPCFVGPFEILERVGVVAYRLALPPSLSVVHNVFHVSMLRKYVADTS 60
           MKGV+RFE++GKLSP FVGPFEILER+G VAYRLALPPSLS VH VFHVSMLRKYV D S
Sbjct: 1   MKGVVRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHEVFHVSMLRKYVPDPS 60

Query: 61  HVVDYEPLEIDEHLSYVEQPVEILAREVKMLRNRSIPLVKVLWRNHRIEEATWEREEEMR 120
           HVVDYEPLEIDE+LSYVEQPVE+LAREVK LRN+ IPLVKVLWRNHR+EEATWERE++MR
Sbjct: 61  HVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMR 120

Query: 121 TRYPELFQD 129
           +RYPELF++
Sbjct: 121 SRYPELFEE 129

[Close]

BLAST of CsGy6G015542 vs. ExPASy TrEMBL
Match: A0A5A7UZD7 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold18953G00010 PE=4 SV=1)

HSP 1 Score: 228 bits (582), Expect = 4.18e-74
Identity = 107/129 (82.95%), Postives = 122/129 (94.57%), Query Frame = 0


Query: 1   MKGVMRFEKKGKLSPCFVGPFEILERVGVVAYRLALPPSLSVVHNVFHVSMLRKYVADTS 60
           M+GV+RFE++GKLSPCFVGPFEILER+G VAYRLALPPSLS VH+VFHVSMLRKYV D S
Sbjct: 79  MRGVLRFERRGKLSPCFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPS 138

Query: 61  HVVDYEPLEIDEHLSYVEQPVEILAREVKMLRNRSIPLVKVLWRNHRIEEATWEREEEMR 120
           HVVDYEPLEIDE+LSY EQPVE+LAREVK LRN+ IPLVKVLWRNHR+EEATWERE++MR
Sbjct: 139 HVVDYEPLEIDENLSYTEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMR 198

Query: 121 TRYPELFQD 129
           +RYPELF++
Sbjct: 199 SRYPELFEE 207

[Close]

BLAST of CsGy6G015542 vs. ExPASy TrEMBL
Match: A0A5A7TQM9 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold32484G00010 PE=4 SV=1)

HSP 1 Score: 225 bits (574), Expect = 5.23e-74
Identity = 107/129 (82.95%), Postives = 122/129 (94.57%), Query Frame = 0


Query: 1   MKGVMRFEKKGKLSPCFVGPFEILERVGVVAYRLALPPSLSVVHNVFHVSMLRKYVADTS 60
           M+GV+RFE++GKLSP FVGPFEILER+G VAYRLALPPSLS VH+VFHVSMLRKYV D S
Sbjct: 1   MRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPS 60

Query: 61  HVVDYEPLEIDEHLSYVEQPVEILAREVKMLRNRSIPLVKVLWRNHRIEEATWEREEEMR 120
           HVVDYEPLEIDE+LSYVEQPVE+LAREVK LRN+ IPLVKVLWRNHR+EEATWERE++MR
Sbjct: 61  HVVDYEPLEIDENLSYVEQPVEVLAREVKTLRNKEIPLVKVLWRNHRVEEATWEREDDMR 120

Query: 121 TRYPELFQD 129
           +RYPELF++
Sbjct: 121 SRYPELFEE 129

The following BLAST results are available for this feature:

BLAST of CsGy6G015542 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy6G015542 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031737528.1	2.28e-84	97.67	uncharacterized protein LOC116402421 [Cucumis sativus]	[more]
XP_031740423.1	5.51e-82	98.40	uncharacterized protein LOC116403424 [Cucumis sativus] >XP_031745636.1 uncharact...	[more]
XP_031737526.1	2.24e-81	97.60	uncharacterized protein LOC116402419 [Cucumis sativus]	[more]
XP_031742257.1	3.73e-80	96.80	uncharacterized protein LOC116404138 [Cucumis sativus]	[more]
XP_031736735.1	1.52e-79	96.00	uncharacterized protein LOC116402077 [Cucumis sativus]	[more]

BLAST of CsGy6G015542 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3B9X0	6.65e-75	82.95	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold282G00370 PE...	[more]
A0A5A7U2G4	1.34e-74	84.50	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold32643G00010 ...	[more]
A0A5A7V9X5	3.68e-74	83.72	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4084G00010 P...	[more]
A0A5A7UZD7	4.18e-74	82.95	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold18953G00010 ...	[more]
A0A5A7TQM9	5.23e-74	82.95	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold32484G00010 ...	[more]

BLAST of CsGy6G015542 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 2..123
None	No IPR available	PANTHER	PTHR46148:SF21	DOMAIN PROTEIN, PUTATIVE-RELATED	coord: 2..123
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 43..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G015542.1	CsGy6G015542.1	mRNA