CsGy6G015355 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy6G015355
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationGy14Chr6: 13983954 .. 13984274 (-)
RNA-Seq ExpressionCsGy6G015355
SyntenyCsGy6G015355
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAAGAAGCATCAAGGGAACGTGAAGGTAAAGAGGGTGCAGCTTCAAGGTCTTCGAACCAAATTCGAGACTCTACGAATGAAGATGAGCGAGTCGGTGATTGATTTCTTTGCAAGAACAATGTCAATCGCCAACAAAATGCGGATTCATGGAGAAAAAATAGAGGACGTCACCATTGTGGAAAAGATTCTTCGATCAATGACACCGAAGTTTAATTTTGTTGTATGTTCCATAGAAGAGTCCAAAGATATTGATAATCTTTCAATTGATGAGTTGCAGAGCTCTTTACTGATTCATGAGCAAAAAGTTACCAAGTAA

mRNA sequence

ATGAAAAAGAAGCATCAAGGGAACGTGAAGGTAAAGAGGGTGCAGCTTCAAGGTCTTCGAACCAAATTCGAGACTCTACGAATGAAGATGAGCGAGTCGGTGATTGATTTCTTTGCAAGAACAATGTCAATCGCCAACAAAATGCGGATTCATGGAGAAAAAATAGAGGACGTCACCATTGTGGAAAAGATTCTTCGATCAATGACACCGAAGTTTAATTTTGTTGTATGTTCCATAGAAGAGTCCAAAGATATTGATAATCTTTCAATTGATGAGTTGCAGAGCTCTTTACTGATTCATGAGCAAAAAGTTACCAAGTAA

Coding sequence (CDS)

ATGAAAAAGAAGCATCAAGGGAACGTGAAGGTAAAGAGGGTGCAGCTTCAAGGTCTTCGAACCAAATTCGAGACTCTACGAATGAAGATGAGCGAGTCGGTGATTGATTTCTTTGCAAGAACAATGTCAATCGCCAACAAAATGCGGATTCATGGAGAAAAAATAGAGGACGTCACCATTGTGGAAAAGATTCTTCGATCAATGACACCGAAGTTTAATTTTGTTGTATGTTCCATAGAAGAGTCCAAAGATATTGATAATCTTTCAATTGATGAGTTGCAGAGCTCTTTACTGATTCATGAGCAAAAAGTTACCAAGTAA

Protein sequence

MKKKHQGNVKVKRVQLQGLRTKFETLRMKMSESVIDFFARTMSIANKMRIHGEKIEDVTIVEKILRSMTPKFNFVVCSIEESKDIDNLSIDELQSSLLIHEQKVTK*
Homology
BLAST of CsGy6G015355 vs. NCBI nr
Match: KAE8647019.1 (hypothetical protein Csa_017017 [Cucumis sativus])

HSP 1 Score: 198 bits (504), Expect = 9.47e-64
Identity = 104/106 (98.11%), Postives = 105/106 (99.06%), Query Frame = 0

Query: 1   MKKKHQGNVKVKRVQLQGLRTKFETLRMKMSESVIDFFARTMSIANKMRIHGEKIEDVTI 60
           MKKKHQGNVK KRVQLQGLRTKFETLRMKMSESVIDFFARTMSIANKMRIHGEKIEDVTI
Sbjct: 1   MKKKHQGNVKAKRVQLQGLRTKFETLRMKMSESVIDFFARTMSIANKMRIHGEKIEDVTI 60

Query: 61  VEKILRSMTPKFNFVVCSIEESKDIDNLSIDELQSSLLIHEQKVTK 106
           VEKILRSMTPKFNFVVCSIEESKDI+NLSIDELQSSLLIHEQKVTK
Sbjct: 61  VEKILRSMTPKFNFVVCSIEESKDIENLSIDELQSSLLIHEQKVTK 106

BLAST of CsGy6G015355 vs. NCBI nr
Match: XP_008464977.1 (PREDICTED: uncharacterized protein LOC103502717 [Cucumis melo] >KAA0057221.1 uncharacterized protein E6C27_scaffold280G00550 [Cucumis melo var. makuwa] >TYK18741.1 uncharacterized protein E5676_scaffold257G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 188 bits (478), Expect = 3.72e-59
Identity = 98/106 (92.45%), Postives = 103/106 (97.17%), Query Frame = 0

Query: 1   MKKKHQGNVKVKRVQLQGLRTKFETLRMKMSESVIDFFARTMSIANKMRIHGEKIEDVTI 60
           MKKK+QGNVK KRVQLQGLRTKFETLRMK SESVIDFFARTM+IANKMRIHGEK+EDVTI
Sbjct: 1   MKKKYQGNVKAKRVQLQGLRTKFETLRMKTSESVIDFFARTMTIANKMRIHGEKMEDVTI 60

Query: 61  VEKILRSMTPKFNFVVCSIEESKDIDNLSIDELQSSLLIHEQKVTK 106
           V+KILRSMTPKFNFV CSIEESKDIDNLSIDELQSSLL+HEQKVTK
Sbjct: 61  VKKILRSMTPKFNFVGCSIEESKDIDNLSIDELQSSLLVHEQKVTK 106

BLAST of CsGy6G015355 vs. NCBI nr
Match: XP_008456818.1 (PREDICTED: uncharacterized protein LOC103496656 [Cucumis melo])

HSP 1 Score: 182 bits (463), Expect = 3.95e-56
Identity = 95/106 (89.62%), Postives = 101/106 (95.28%), Query Frame = 0

Query: 1   MKKKHQGNVKVKRVQLQGLRTKFETLRMKMSESVIDFFARTMSIANKMRIHGEKIEDVTI 60
           MKKKHQGNVK K VQLQGLR +FETLRMK SESVIDFFARTM+IANKMRIHGEK+EDVTI
Sbjct: 1   MKKKHQGNVKAKLVQLQGLRIEFETLRMKTSESVIDFFARTMTIANKMRIHGEKLEDVTI 60

Query: 61  VEKILRSMTPKFNFVVCSIEESKDIDNLSIDELQSSLLIHEQKVTK 106
           +EKILRSMT KFNFVVCSIEESKDIDNLSID+LQSSLL+HEQKVTK
Sbjct: 61  MEKILRSMTVKFNFVVCSIEESKDIDNLSIDKLQSSLLVHEQKVTK 106

BLAST of CsGy6G015355 vs. NCBI nr
Match: XP_024030010.1 (uncharacterized protein LOC112094115 [Morus notabilis])

HSP 1 Score: 176 bits (447), Expect = 5.49e-53
Identity = 87/106 (82.08%), Postives = 100/106 (94.34%), Query Frame = 0

Query: 1   MKKKHQGNVKVKRVQLQGLRTKFETLRMKMSESVIDFFARTMSIANKMRIHGEKIEDVTI 60
           MKKKHQGNVK +RVQLQ LRT+FETLRMK  ES+IDFF+RTM+IANKM+IHGEK+EDVTI
Sbjct: 99  MKKKHQGNVKAQRVQLQRLRTEFETLRMKSGESIIDFFSRTMTIANKMQIHGEKMEDVTI 158

Query: 61  VEKILRSMTPKFNFVVCSIEESKDIDNLSIDELQSSLLIHEQKVTK 106
           VEKILRSMTPKFNF+VCSIEESKD+D LS+DELQSSLL+HEQK+ +
Sbjct: 159 VEKILRSMTPKFNFIVCSIEESKDVDTLSLDELQSSLLVHEQKIVQ 204

BLAST of CsGy6G015355 vs. NCBI nr
Match: XP_027771419.1 (uncharacterized protein LOC114076505 [Solanum pennellii])

HSP 1 Score: 174 bits (440), Expect = 8.51e-53
Identity = 88/104 (84.62%), Postives = 99/104 (95.19%), Query Frame = 0

Query: 1   MKKKHQGNVKVKRVQLQGLRTKFETLRMKMSESVIDFFARTMSIANKMRIHGEKIEDVTI 60
           MKKK+QGNVK KRVQLQGLRT+FETLRMK  E+V DFF+RTM+IA+KMRIHGE+++DVTI
Sbjct: 1   MKKKYQGNVKAKRVQLQGLRTEFETLRMKSGEAVADFFSRTMAIASKMRIHGEQMKDVTI 60

Query: 61  VEKILRSMTPKFNFVVCSIEESKDIDNLSIDELQSSLLIHEQKV 104
           VEKILRSMTPKFNFVVCSIEESKDID LSIDELQSSLL+HEQK+
Sbjct: 61  VEKILRSMTPKFNFVVCSIEESKDIDELSIDELQSSLLVHEQKI 104

BLAST of CsGy6G015355 vs. ExPASy TrEMBL
Match: A0A5A7UUP0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G00440 PE=4 SV=1)

HSP 1 Score: 188 bits (478), Expect = 1.80e-59
Identity = 98/106 (92.45%), Postives = 103/106 (97.17%), Query Frame = 0

Query: 1   MKKKHQGNVKVKRVQLQGLRTKFETLRMKMSESVIDFFARTMSIANKMRIHGEKIEDVTI 60
           MKKK+QGNVK KRVQLQGLRTKFETLRMK SESVIDFFARTM+IANKMRIHGEK+EDVTI
Sbjct: 1   MKKKYQGNVKAKRVQLQGLRTKFETLRMKTSESVIDFFARTMTIANKMRIHGEKMEDVTI 60

Query: 61  VEKILRSMTPKFNFVVCSIEESKDIDNLSIDELQSSLLIHEQKVTK 106
           V+KILRSMTPKFNFV CSIEESKDIDNLSIDELQSSLL+HEQKVTK
Sbjct: 61  VKKILRSMTPKFNFVGCSIEESKDIDNLSIDELQSSLLVHEQKVTK 106

BLAST of CsGy6G015355 vs. ExPASy TrEMBL
Match: A0A1S3CMQ7 (uncharacterized protein LOC103502717 OS=Cucumis melo OX=3656 GN=LOC103502717 PE=4 SV=1)

HSP 1 Score: 188 bits (478), Expect = 1.80e-59
Identity = 98/106 (92.45%), Postives = 103/106 (97.17%), Query Frame = 0

Query: 1   MKKKHQGNVKVKRVQLQGLRTKFETLRMKMSESVIDFFARTMSIANKMRIHGEKIEDVTI 60
           MKKK+QGNVK KRVQLQGLRTKFETLRMK SESVIDFFARTM+IANKMRIHGEK+EDVTI
Sbjct: 1   MKKKYQGNVKAKRVQLQGLRTKFETLRMKTSESVIDFFARTMTIANKMRIHGEKMEDVTI 60

Query: 61  VEKILRSMTPKFNFVVCSIEESKDIDNLSIDELQSSLLIHEQKVTK 106
           V+KILRSMTPKFNFV CSIEESKDIDNLSIDELQSSLL+HEQKVTK
Sbjct: 61  VKKILRSMTPKFNFVGCSIEESKDIDNLSIDELQSSLLVHEQKVTK 106

BLAST of CsGy6G015355 vs. ExPASy TrEMBL
Match: A0A1S3C446 (uncharacterized protein LOC103496656 OS=Cucumis melo OX=3656 GN=LOC103496656 PE=4 SV=1)

HSP 1 Score: 182 bits (463), Expect = 1.91e-56
Identity = 95/106 (89.62%), Postives = 101/106 (95.28%), Query Frame = 0

Query: 1   MKKKHQGNVKVKRVQLQGLRTKFETLRMKMSESVIDFFARTMSIANKMRIHGEKIEDVTI 60
           MKKKHQGNVK K VQLQGLR +FETLRMK SESVIDFFARTM+IANKMRIHGEK+EDVTI
Sbjct: 1   MKKKHQGNVKAKLVQLQGLRIEFETLRMKTSESVIDFFARTMTIANKMRIHGEKLEDVTI 60

Query: 61  VEKILRSMTPKFNFVVCSIEESKDIDNLSIDELQSSLLIHEQKVTK 106
           +EKILRSMT KFNFVVCSIEESKDIDNLSID+LQSSLL+HEQKVTK
Sbjct: 61  MEKILRSMTVKFNFVVCSIEESKDIDNLSIDKLQSSLLVHEQKVTK 106

BLAST of CsGy6G015355 vs. ExPASy TrEMBL
Match: A0A1S3C2A9 (uncharacterized protein LOC103496216 OS=Cucumis melo OX=3656 GN=LOC103496216 PE=4 SV=1)

HSP 1 Score: 169 bits (429), Expect = 1.22e-52
Identity = 88/98 (89.80%), Postives = 94/98 (95.92%), Query Frame = 0

Query: 9   VKVKRVQLQGLRTKFETLRMKMSESVIDFFARTMSIANKMRIHGEKIEDVTIVEKILRSM 68
           +K KRVQLQ LRT+FETLRMK+SESVIDFFARTM IANKMRIHGEK+EDVTIVEKIL SM
Sbjct: 1   MKAKRVQLQSLRTEFETLRMKISESVIDFFARTMKIANKMRIHGEKMEDVTIVEKILPSM 60

Query: 69  TPKFNFVVCSIEESKDIDNLSIDELQSSLLIHEQKVTK 106
           TPKFNFVVCSIEESKDI+NLSIDELQSSLL+HEQKVTK
Sbjct: 61  TPKFNFVVCSIEESKDINNLSIDELQSSLLVHEQKVTK 98

BLAST of CsGy6G015355 vs. ExPASy TrEMBL
Match: A0A5A7TA72 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00680 PE=4 SV=1)

HSP 1 Score: 169 bits (429), Expect = 2.29e-52
Identity = 88/98 (89.80%), Postives = 94/98 (95.92%), Query Frame = 0

Query: 9   VKVKRVQLQGLRTKFETLRMKMSESVIDFFARTMSIANKMRIHGEKIEDVTIVEKILRSM 68
           +K KRVQLQ LRT+FETLRMK+SESVIDFFARTM IANKMRIHGEK+EDVTIVEKIL SM
Sbjct: 1   MKAKRVQLQSLRTEFETLRMKISESVIDFFARTMKIANKMRIHGEKMEDVTIVEKILPSM 60

Query: 69  TPKFNFVVCSIEESKDIDNLSIDELQSSLLIHEQKVTK 106
           TPKFNFVVCSIEESKDI+NLSIDELQSSLL+HEQKVTK
Sbjct: 61  TPKFNFVVCSIEESKDINNLSIDELQSSLLVHEQKVTK 98

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAE8647019.19.47e-6498.11hypothetical protein Csa_017017 [Cucumis sativus][more]
XP_008464977.13.72e-5992.45PREDICTED: uncharacterized protein LOC103502717 [Cucumis melo] >KAA0057221.1 unc... [more]
XP_008456818.13.95e-5689.62PREDICTED: uncharacterized protein LOC103496656 [Cucumis melo][more]
XP_024030010.15.49e-5382.08uncharacterized protein LOC112094115 [Morus notabilis][more]
XP_027771419.18.51e-5384.62uncharacterized protein LOC114076505 [Solanum pennellii][more]
Match NameE-valueIdentityDescription
A0A5A7UUP01.80e-5992.45Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3CMQ71.80e-5992.45uncharacterized protein LOC103502717 OS=Cucumis melo OX=3656 GN=LOC103502717 PE=... [more]
A0A1S3C4461.91e-5689.62uncharacterized protein LOC103496656 OS=Cucumis melo OX=3656 GN=LOC103496656 PE=... [more]
A0A1S3C2A91.22e-5289.80uncharacterized protein LOC103496216 OS=Cucumis melo OX=3656 GN=LOC103496216 PE=... [more]
A0A5A7TA722.29e-5289.80Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 4..104
e-value: 1.5E-15
score: 57.2
NoneNo IPR availablePANTHERPTHR34222:SF47SUBFAMILY NOT NAMEDcoord: 1..105
NoneNo IPR availablePANTHERPTHR34222FAMILY NOT NAMEDcoord: 1..105

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy6G015355.1CsGy6G015355.1mRNA