CsGy6G014865 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G014865
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	LOW QUALITY PROTEIN: uncharacterized protein LOC112489936
Location	Gy14Chr6: 13086704 .. 13087003 (-)
RNA-Seq Expression	CsGy6G014865
Synteny	CsGy6G014865

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTTTCTTGATTCTATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTATCCCTGCTAACTAGCTATGCGGAGGTACCCCTCTGCGGCCAGCTTCTTAGAGGGACTATGGCCGCTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTGGCCGACAGGCCCGGGTAATCTTTGAAATTTCATCGTGATGGGG

mRNA sequence

CTCTTTCTTGATTCTATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTATCCCTGCTAACTAGCTATGCGGAGGTACCCCTCTGCGGCCAGCTTCTTAGAGGGACTATGGCCGCTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTGGCCGACAGGCCCGGGTAATCTTTGAAATTTCATCGTGATGGGG

Coding sequence (CDS)

ATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTATCCCTGCTAACTAGCTATGCGGAGGTACCCCTCTGCGGCCAGCTTCTTAGAGGGACTATGGCCGCTTAG

Protein sequence

MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEVPLCGQLLRGTMAA*

Homology

[Close]

BLAST of CsGy6G014865 vs. NCBI nr
Match: GGG20998.1 (hypothetical protein GCM10010913_49050 [Paenibacillus aceti])

HSP 1 Score: 91.7 bits (226), Expect = 4.52e-23
Identity = 44/47 (93.62%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEVPLCGQLLRGTMAA 47
          MGGGAWPFLVGGAICLVNSVNERDLSLLTSY EV L GQLLRGTMAA
Sbjct: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYVEVTLHGQLLRGTMAA 47

[Close]

BLAST of CsGy6G014865 vs. NCBI nr
Match: KWW24007.1 (RRNA intron-encoded homing endonuclease [bacterium F082])

HSP 1 Score: 91.7 bits (226), Expect = 4.52e-23
Identity = 44/46 (95.65%), Postives = 44/46 (95.65%), Query Frame = 0


Query: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEVPLCGQLLRGTMA 46
          MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEV L GQLLRGTMA
Sbjct: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEVTLRGQLLRGTMA 46

[Close]

BLAST of CsGy6G014865 vs. NCBI nr
Match: DAD24277.1 (TPA_asm: hypothetical protein HUJ06_025741 [Nelumbo nucifera])

HSP 1 Score: 90.5 bits (223), Expect = 1.16e-22
Identity = 43/46 (93.48%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEVPLCGQLLRGTMA 46
          MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAE P  GQLLRGTMA
Sbjct: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEAPPRGQLLRGTMA 46

[Close]

BLAST of CsGy6G014865 vs. NCBI nr
Match: TKR79119.1 (uncharacterized protein D5086_0000275640 [Populus alba])

HSP 1 Score: 91.7 bits (226), Expect = 2.27e-22
Identity = 44/46 (95.65%), Postives = 44/46 (95.65%), Query Frame = 0


Query: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEVPLCGQLLRGTMA 46
          MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEV L GQLLRGTMA
Sbjct: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEVTLRGQLLRGTMA 46

[Close]

BLAST of CsGy6G014865 vs. NCBI nr
Match: GAT75088.1 (hypothetical protein MHM582_3598 [Microbacterium sp. HM58-2])

HSP 1 Score: 89.7 bits (221), Expect = 2.34e-22
Identity = 43/47 (91.49%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEVPLCGQLLRGTMAA 47
          MGGGAWPFLVGGAICLVNSVNERDLSLL SY EV L GQLLRGTMAA
Sbjct: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLNSYVEVTLHGQLLRGTMAA 47

[Close]

BLAST of CsGy6G014865 vs. ExPASy TrEMBL
Match: A0A4U5N899 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000275640 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.10e-22
Identity = 44/46 (95.65%), Postives = 44/46 (95.65%), Query Frame = 0


Query: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEVPLCGQLLRGTMA 46
          MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEV L GQLLRGTMA
Sbjct: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEVTLRGQLLRGTMA 46

[Close]

BLAST of CsGy6G014865 vs. ExPASy TrEMBL
Match: A0A4U5PNX9 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000012910 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.26e-22
Identity = 44/46 (95.65%), Postives = 44/46 (95.65%), Query Frame = 0


Query: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEVPLCGQLLRGTMA 46
          MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEV L GQLLRGTMA
Sbjct: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEVTLRGQLLRGTMA 46

[Close]

BLAST of CsGy6G014865 vs. ExPASy TrEMBL
Match: A0A4U5R3F9 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000013030 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.26e-22
Identity = 44/46 (95.65%), Postives = 44/46 (95.65%), Query Frame = 0


Query: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEVPLCGQLLRGTMA 46
          MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEV L GQLLRGTMA
Sbjct: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEVTLRGQLLRGTMA 46

[Close]

BLAST of CsGy6G014865 vs. ExPASy TrEMBL
Match: A0A087HEV1 (Uncharacterized protein OS=Arabis alpina OX=50452 GN=AALP_AA2G024300 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.33e-21
Identity = 41/46 (89.13%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEVPLCGQLLRGTMA 46
          MGGGAWPFLVGGAICLVNSVNERDLSLLTSY E  L G+LLRGTMA
Sbjct: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYVEASLHGRLLRGTMA 46

[Close]

BLAST of CsGy6G014865 vs. ExPASy TrEMBL
Match: A0A0V0GJ40 (Putative ovule protein OS=Solanum chacoense OX=4108 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.66e-21
Identity = 41/43 (95.35%), Postives = 41/43 (95.35%), Query Frame = 0


Query: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEVPLCGQLLRG 43
          MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEV L GQLLRG
Sbjct: 1  MGGGAWPFLVGGAICLVNSVNERDLSLLTSYAEVSLRGQLLRG 43

The following BLAST results are available for this feature:

BLAST of CsGy6G014865 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy6G014865 vs. NCBI nr


Match Name	E-value	Identity	Description
GGG20998.1	4.52e-23	93.62	hypothetical protein GCM10010913_49050 [Paenibacillus aceti]	[more]
KWW24007.1	4.52e-23	95.65	RRNA intron-encoded homing endonuclease [bacterium F082]	[more]
DAD24277.1	1.16e-22	93.48	TPA_asm: hypothetical protein HUJ06_025741 [Nelumbo nucifera]	[more]
TKR79119.1	2.27e-22	95.65	uncharacterized protein D5086_0000275640 [Populus alba]	[more]
GAT75088.1	2.34e-22	91.49	hypothetical protein MHM582_3598 [Microbacterium sp. HM58-2]	[more]

BLAST of CsGy6G014865 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4U5N899	1.10e-22	95.65	Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000275640 PE=4 SV=1	[more]
A0A4U5PNX9	1.26e-22	95.65	Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000012910 PE=4 SV=1	[more]
A0A4U5R3F9	1.26e-22	95.65	Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000013030 PE=4 SV=1	[more]
A0A087HEV1	1.33e-21	89.13	Uncharacterized protein OS=Arabis alpina OX=50452 GN=AALP_AA2G024300 PE=4 SV=1	[more]
A0A0V0GJ40	3.66e-21	95.35	Putative ovule protein OS=Solanum chacoense OX=4108 PE=4 SV=1	[more]

BLAST of CsGy6G014865 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G014865.1	CsGy6G014865.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity