CsGy6G014070 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G014070
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Major viral transcription factor
Location	Gy14Chr6: 12485738 .. 12486160 (-)
RNA-Seq Expression	CsGy6G014070
Synteny	CsGy6G014070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGCAAATCAAACTGTCGTCGTTGATTTTCTCAGAGGATCAATGGAGAACGAATACAAACCCAGATTGCCTAAACCTCCAACCAGGTTGCAGAAGCAGGCGCCGGCCAGTCTTCATCTCGATCAACTTTCAAGCGTCTCAATGTCTTCTGCTAGTAACGACATTTGTTCCAAGGCGATTCTTCCTCTCCTATCGCCACTTCCTCTATCGCCACAGCCCTTGCCTGAAATCGACGGAAATAGAATATCTGCAAACGGAAATGCCGTAGACGGCGGCGGTGGTAATGGGGATCAAAGAGGAATAGGTTTTGTAGCTCCTGGTGGTTGGCAACATCCGGCAGTGGCAGCGACATTTCCTGATCCTTCTACGCTGTTTACTTTCTTTCAATCGCAATGCATGGTAAGCAGTAACACACCGTAA

mRNA sequence

ATGAGTGCAAATCAAACTGTCGTCGTTGATTTTCTCAGAGGATCAATGGAGAACGAATACAAACCCAGATTGCCTAAACCTCCAACCAGGTTGCAGAAGCAGGCGCCGGCCAGTCTTCATCTCGATCAACTTTCAAGCGTCTCAATGTCTTCTGCTAGTAACGACATTTGTTCCAAGGCGATTCTTCCTCTCCTATCGCCACTTCCTCTATCGCCACAGCCCTTGCCTGAAATCGACGGAAATAGAATATCTGCAAACGGAAATGCCGTAGACGGCGGCGGTGGTAATGGGGATCAAAGAGGAATAGGTTTTGTAGCTCCTGGTGGTTGGCAACATCCGGCAGTGGCAGCGACATTTCCTGATCCTTCTACGCTGTTTACTTTCTTTCAATCGCAATGCATGGTAAGCAGTAACACACCGTAA

Coding sequence (CDS)

ATGAGTGCAAATCAAACTGTCGTCGTTGATTTTCTCAGAGGATCAATGGAGAACGAATACAAACCCAGATTGCCTAAACCTCCAACCAGGTTGCAGAAGCAGGCGCCGGCCAGTCTTCATCTCGATCAACTTTCAAGCGTCTCAATGTCTTCTGCTAGTAACGACATTTGTTCCAAGGCGATTCTTCCTCTCCTATCGCCACTTCCTCTATCGCCACAGCCCTTGCCTGAAATCGACGGAAATAGAATATCTGCAAACGGAAATGCCGTAGACGGCGGCGGTGGTAATGGGGATCAAAGAGGAATAGGTTTTGTAGCTCCTGGTGGTTGGCAACATCCGGCAGTGGCAGCGACATTTCCTGATCCTTCTACGCTGTTTACTTTCTTTCAATCGCAATGCATGGTAAGCAGTAACACACCGTAA

Protein sequence

MSANQTVVVDFLRGSMENEYKPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDICSKAILPLLSPLPLSPQPLPEIDGNRISANGNAVDGGGGNGDQRGIGFVAPGGWQHPAVAATFPDPSTLFTFFQSQCMVSSNTP*

Homology

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BLAST of CsGy6G014070 vs. NCBI nr
Match: XP_011657141.1 (uncharacterized protein LOC105435808 [Cucumis sativus] >XP_031742438.1 uncharacterized protein LOC116404357 [Cucumis sativus] >KAE8645882.1 hypothetical protein Csa_017707 [Cucumis sativus])

HSP 1 Score: 279 bits (714), Expect = 1.09e-94
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSANQTVVVDFLRGSMENEYKPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDICSKA 60
           MSANQTVVVDFLRGSMENEYKPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDICSKA
Sbjct: 1   MSANQTVVVDFLRGSMENEYKPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDICSKA 60

Query: 61  ILPLLSPLPLSPQPLPEIDGNRISANGNAVDGGGGNGDQRGIGFVAPGGWQHPAVAATFP 120
           ILPLLSPLPLSPQPLPEIDGNRISANGNAVDGGGGNGDQRGIGFVAPGGWQHPAVAATFP
Sbjct: 61  ILPLLSPLPLSPQPLPEIDGNRISANGNAVDGGGGNGDQRGIGFVAPGGWQHPAVAATFP 120

Query: 121 DPSTLFTFFQSQCMVSSNTP 140
           DPSTLFTFFQSQCMVSSNTP
Sbjct: 121 DPSTLFTFFQSQCMVSSNTP 140

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BLAST of CsGy6G014070 vs. NCBI nr
Match: XP_038902307.1 (uncharacterized protein LOC120088941 [Benincasa hispida])

HSP 1 Score: 259 bits (663), Expect = 6.56e-87
Identity = 129/140 (92.14%), Postives = 134/140 (95.71%), Query Frame = 0


Query: 1   MSANQTVVVDFLRGSMENEYKPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDICSKA 60
           M+ANQTVV+DFLRGSMENE+K RLPKPPTRLQKQAPASLHLDQLSSVSMSS S D CSKA
Sbjct: 1   MNANQTVVLDFLRGSMENEHKARLPKPPTRLQKQAPASLHLDQLSSVSMSSGSADTCSKA 60

Query: 61  ILPLLSPLPLSPQPLPEIDGNRISANGNAVDGGGGNGDQRGIGFVAPGGWQHPAVAATFP 120
           ILPLLSPLPLSPQPLPEIDGNRISANGNA DGGGGNGDQRGIGF APGGWQHPAVAATFP
Sbjct: 61  ILPLLSPLPLSPQPLPEIDGNRISANGNAADGGGGNGDQRGIGFAAPGGWQHPAVAATFP 120

Query: 121 DPSTLFTFFQSQCMVSSNTP 140
           DPSTLFTFFQSQC+V+SNTP
Sbjct: 121 DPSTLFTFFQSQCIVTSNTP 140

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BLAST of CsGy6G014070 vs. NCBI nr
Match: KAA0061869.1 (uncharacterized protein E6C27_scaffold89G001110 [Cucumis melo var. makuwa] >TYK15387.1 uncharacterized protein E5676_scaffold571G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 236 bits (602), Expect = 7.96e-78
Identity = 119/125 (95.20%), Postives = 121/125 (96.80%), Query Frame = 0


Query: 16  MENEYKPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDICSKAILPLLSPLPLSPQPL 75
           MENE KPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASND  SKAILPLLSPLPLSPQPL
Sbjct: 1   MENELKPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDTYSKAILPLLSPLPLSPQPL 60

Query: 76  PEIDGNRISANGNAVDGGGGNGDQRGIGFVAPGGWQHPAVAATFPDPSTLFTFFQSQCMV 135
           PEIDGNRISA GNAV+GGGGNGDQRGIGFVAPGGWQHPAVAATFPDPSTLFTFFQSQC+V
Sbjct: 61  PEIDGNRISATGNAVEGGGGNGDQRGIGFVAPGGWQHPAVAATFPDPSTLFTFFQSQCIV 120

Query: 136 SSNTP 140
           SSNTP
Sbjct: 121 SSNTP 125

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BLAST of CsGy6G014070 vs. NCBI nr
Match: KAG6605440.1 (hypothetical protein SDJN03_02757, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035388.1 hypothetical protein SDJN02_02184, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 208 bits (529), Expect = 1.64e-66
Identity = 108/140 (77.14%), Postives = 116/140 (82.86%), Query Frame = 0


Query: 1   MSANQTVVVDFLRGSMENEYKPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDICSKA 60
           M+ANQ  VVDF   +ME E+K RLPKPPTRLQKQAPASLHLDQL+SVSMSS S DI SKA
Sbjct: 1   MNANQAFVVDFPGAAMEKEHKSRLPKPPTRLQKQAPASLHLDQLTSVSMSSGSADISSKA 60

Query: 61  ILPLLSPLPLSPQPLPEIDGNRISANGNAVDGGGGNGDQRGIGFVAPGGWQHPAVAATFP 120
           ILPLLSPLP SPQP PE +GNR +ANGN VDGG   GDQRGI F  PGGWQHPAVA TF 
Sbjct: 61  ILPLLSPLPSSPQPFPETEGNRRAANGNTVDGG--YGDQRGICFAPPGGWQHPAVATTFA 120

Query: 121 DPSTLFTFFQSQCMVSSNTP 140
           DPSTLFTFFQSQC+V+S TP
Sbjct: 121 DPSTLFTFFQSQCIVNSKTP 138

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BLAST of CsGy6G014070 vs. NCBI nr
Match: XP_023512816.1 (uncharacterized protein LOC111777440 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 201 bits (512), Expect = 6.57e-64
Identity = 100/140 (71.43%), Postives = 116/140 (82.86%), Query Frame = 0


Query: 1   MSANQTVVVDFLRGSMENEYKPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDICSKA 60
           M+ANQ+ VVDFLR +M+NE   R+PKPPTRLQKQAPA L+LDQLSSVSMSS   +I SK 
Sbjct: 1   MNANQSAVVDFLRAAMDNERGGRIPKPPTRLQKQAPAGLYLDQLSSVSMSSVGTEISSKT 60

Query: 61  ILPLLSPLPLSPQPLPEIDGNRISANGNAVDGGGGNGDQRGIGFVAPGGWQHPAVAATFP 120
           +LPLLSPLP SPQP  E +GNR+  NGN  D GG NGDQRGI F +PGGWQHPAVAAT+ 
Sbjct: 61  VLPLLSPLPSSPQPFSETEGNRMLTNGNGADSGG-NGDQRGIVFASPGGWQHPAVAATYA 120

Query: 121 DPSTLFTFFQSQCMVSSNTP 140
           DPSTLFTFFQS+C+++SNTP
Sbjct: 121 DPSTLFTFFQSKCIITSNTP 139

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BLAST of CsGy6G014070 vs. ExPASy TrEMBL
Match: A0A0A0KBQ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G188670 PE=4 SV=1)

HSP 1 Score: 279 bits (714), Expect = 5.29e-95
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSANQTVVVDFLRGSMENEYKPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDICSKA 60
           MSANQTVVVDFLRGSMENEYKPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDICSKA
Sbjct: 1   MSANQTVVVDFLRGSMENEYKPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDICSKA 60

Query: 61  ILPLLSPLPLSPQPLPEIDGNRISANGNAVDGGGGNGDQRGIGFVAPGGWQHPAVAATFP 120
           ILPLLSPLPLSPQPLPEIDGNRISANGNAVDGGGGNGDQRGIGFVAPGGWQHPAVAATFP
Sbjct: 61  ILPLLSPLPLSPQPLPEIDGNRISANGNAVDGGGGNGDQRGIGFVAPGGWQHPAVAATFP 120

Query: 121 DPSTLFTFFQSQCMVSSNTP 140
           DPSTLFTFFQSQCMVSSNTP
Sbjct: 121 DPSTLFTFFQSQCMVSSNTP 140

[Close]

BLAST of CsGy6G014070 vs. ExPASy TrEMBL
Match: A0A5A7V856 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00270 PE=4 SV=1)

HSP 1 Score: 236 bits (602), Expect = 3.85e-78
Identity = 119/125 (95.20%), Postives = 121/125 (96.80%), Query Frame = 0


Query: 16  MENEYKPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDICSKAILPLLSPLPLSPQPL 75
           MENE KPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASND  SKAILPLLSPLPLSPQPL
Sbjct: 1   MENELKPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDTYSKAILPLLSPLPLSPQPL 60

Query: 76  PEIDGNRISANGNAVDGGGGNGDQRGIGFVAPGGWQHPAVAATFPDPSTLFTFFQSQCMV 135
           PEIDGNRISA GNAV+GGGGNGDQRGIGFVAPGGWQHPAVAATFPDPSTLFTFFQSQC+V
Sbjct: 61  PEIDGNRISATGNAVEGGGGNGDQRGIGFVAPGGWQHPAVAATFPDPSTLFTFFQSQCIV 120

Query: 136 SSNTP 140
           SSNTP
Sbjct: 121 SSNTP 125

[Close]

BLAST of CsGy6G014070 vs. ExPASy TrEMBL
Match: A0A6J1D5B7 (uncharacterized protein LOC111017071 OS=Momordica charantia OX=3673 GN=LOC111017071 PE=4 SV=1)

HSP 1 Score: 123 bits (309), Expect = 6.92e-33
Identity = 73/107 (68.22%), Postives = 83/107 (77.57%), Query Frame = 0


Query: 1   MSANQTVVVDFLRGSMENEYKP--RLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDICS 60
           M+ANQ+ V+DFLR SME E+K   R+PKPPTRLQKQAPASLHLDQ+SS SM+    +  S
Sbjct: 1   MNANQSAVIDFLRASMEKEHKAKSRIPKPPTRLQKQAPASLHLDQVSSTSMAPGGAETSS 60

Query: 61  KAILPLLSPLPLSPQPLPEIDGN---RISA-NGNAVDGGGGNGDQRG 101
           KAILPLLSPLPLSPQP PE + N   R+SA N NAVDGGG   DQRG
Sbjct: 61  KAILPLLSPLPLSPQPWPETEENNTNRVSAANENAVDGGG---DQRG 104

[Close]

BLAST of CsGy6G014070 vs. ExPASy TrEMBL
Match: A0A6P3ZH11 (uncharacterized protein LOC107411018 OS=Ziziphus jujuba OX=326968 GN=LOC107411018 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 4.16e-23
Identity = 61/114 (53.51%), Postives = 77/114 (67.54%), Query Frame = 0


Query: 26  KPPTRLQKQAPASLHLDQLSSVSMSSASNDICSKAILPLLSPLPLSPQPLPEIDGNR--- 85
           KPPTRLQK+APASL LDQ+ + + + + N+  SKAI PLLSPL LSPQPLPE+   R   
Sbjct: 14  KPPTRLQKKAPASLKLDQVPTSAANDSFNET-SKAI-PLLSPLVLSPQPLPEMLEKRRFG 73

Query: 86  ISANGNAVDGGGGNGDQRGIGFVAPG-GWQHPAVAATFPDPSTLFTFFQSQCMV 135
            +A+ + V+      D+R      P  GWQHPAV  TF DPS+LF FFQSQC++
Sbjct: 74  CAADQHDVE------DKRSEAVPLPADGWQHPAVPTTFTDPSSLFAFFQSQCVI 119

[Close]

BLAST of CsGy6G014070 vs. ExPASy TrEMBL
Match: A0A7J7DE91 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW07G00153 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.42e-21
Identity = 56/125 (44.80%), Postives = 74/125 (59.20%), Query Frame = 0


Query: 11  FLRGSMENEYKPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDICSKAILPLLSPLPL 70
           F R  +E++ K R+ KPPTRLQK+APASL LDQ+++       N   +   +PLLSPL +
Sbjct: 32  FQRQVIEDKNKARVGKPPTRLQKRAPASLQLDQVTNTI-----NSCLAPMAIPLLSPLVI 91

Query: 71  SPQPLPEIDGNRISANGNAVDGGGGNGDQRGIGFVAPGGWQHPAVAATFPDPSTLFTFFQ 130
           SP PL E +      N    DGG    +  G      GGWQHPAVA  + +PS +F FFQ
Sbjct: 92  SPPPLTETEEFMFPTN---CDGGKATQENMGAPLTMEGGWQHPAVAV-YMEPSAIFAFFQ 147

Query: 131 SQCMV 135
           SQC++
Sbjct: 152 SQCVL 147

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BLAST of CsGy6G014070 vs. TAIR 10
Match: AT1G07473.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07476.1); Has 22 Blast hits to 22 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.0 bits (110), Expect = 1.5e-05
Identity = 25/54 (46.30%), Postives = 32/54 (59.26%), Query Frame = 0


Query: 21 KPRLPKPPTRLQKQAPASLHLDQLSSVSMSSASNDICSKAILPLLSPLPLSPQP 75
          K   P+ PTRLQKQAP +LHL  +        S+D+     +PLLSPL +SP P
Sbjct: 10 KSESPRSPTRLQKQAPTALHLGLVPENPFLQQSSDVVGTTAIPLLSPLFVSPSP 63

The following BLAST results are available for this feature:

BLAST of CsGy6G014070 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy6G014070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011657141.1	1.09e-94	100.00	uncharacterized protein LOC105435808 [Cucumis sativus] >XP_031742438.1 uncharact...	[more]
XP_038902307.1	6.56e-87	92.14	uncharacterized protein LOC120088941 [Benincasa hispida]	[more]
KAA0061869.1	7.96e-78	95.20	uncharacterized protein E6C27_scaffold89G001110 [Cucumis melo var. makuwa] >TYK1...	[more]
KAG6605440.1	1.64e-66	77.14	hypothetical protein SDJN03_02757, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023512816.1	6.57e-64	71.43	uncharacterized protein LOC111777440 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy6G014070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBQ7	5.29e-95	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G188670 PE=4 SV=1	[more]
A0A5A7V856	3.85e-78	95.20	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1D5B7	6.92e-33	68.22	uncharacterized protein LOC111017071 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A6P3ZH11	4.16e-23	53.51	uncharacterized protein LOC107411018 OS=Ziziphus jujuba OX=326968 GN=LOC10741101...	[more]
A0A7J7DE91	1.42e-21	44.80	Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW07G00153 ...	[more]

BLAST of CsGy6G014070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07473.1	1.5e-05	46.30	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..104
None	No IPR available	PANTHER	PTHR33912:SF5	F22G5.17	coord: 13..138
IPR040381	Uncharacterized protein At4g14450-like	PANTHER	PTHR33912	OS01G0939400 PROTEIN	coord: 13..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G014070.1	CsGy6G014070.1	mRNA