CsGy6G013615 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G013615
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	RING-H2 finger protein ATL63-like
Location	Gy14Chr6: 12079963 .. 12080525 (-)
RNA-Seq Expression	CsGy6G013615
Synteny	CsGy6G013615

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCAACTCCTCACAATCTTCACTGAATTTTCCATCTTTTGATCCATTATTTGGTCATGCCTTTAAGAGCATCATCTCTTACAATGGAAGTGTACTAATGCTAGCTGCCTTAATCTCTCTGTTTCTTGTCACCATCTTTGTTCTCCTTCTCCACATCTATGCCAGATGGTTCCTCACCCAAGCCCGTCACCAGCGTCGCAGCTCTATCGCCGTCTCTCAAGTGCTCGGCCAGCCTCGGTTGCACCATTTCCATTCCATATCGTTTGATCACACCACCCCTCCAGCTGCCCGCTCTCCCACCAAAGGACTCGCTGCATCGGTGATTTCCGCAATCCCTCTTTTTATTTACATGTCCGAAAACCAATGCAAGATAGGATTGGAATGTGTCATTTGCTTGAGCTTGTTTGAAGAGAATGAGATTGGGAGGAGCTTGCCTAAGTGTAAGCATGTGTTTCACGTCGAGTGCATCGATATGTGGCTGAGTTCTCATTCTAATTGTCCGATTTGTAGAGATCCGGTGGTTCGCACTCATCAGAGTTTGAGAAATGGAATTGGCAATAA

mRNA sequence

ATGTTCAACTCCTCACAATCTTCACTGAATTTTCCATCTTTTGATCCATTATTTGGTCATGCCTTTAAGAGCATCATCTCTTACAATGGAAGTGTACTAATGCTAGCTGCCTTAATCTCTCTGTTTCTTGTCACCATCTTTGTTCTCCTTCTCCACATCTATGCCAGATGGTTCCTCACCCAAGCCCGTCACCAGCGTCGCAGCTCTATCGCCGTCTCTCAAGTGCTCGGCCAGCCTCGGTTGCACCATTTCCATTCCATATCGTTTGATCACACCACCCCTCCAGCTGCCCGCTCTCCCACCAAAGGACTCGCTGCATCGAGATCCGGTGGTTCGCACTCATCAGAGTTTGAGAAATGGAATTGGCAATAA

Coding sequence (CDS)

ATGTTCAACTCCTCACAATCTTCACTGAATTTTCCATCTTTTGATCCATTATTTGGTCATGCCTTTAAGAGCATCATCTCTTACAATGGAAGTGTACTAATGCTAGCTGCCTTAATCTCTCTGTTTCTTGTCACCATCTTTGTTCTCCTTCTCCACATCTATGCCAGATGGTTCCTCACCCAAGCCCGTCACCAGCGTCGCAGCTCTATCGCCGTCTCTCAAGTGCTCGGCCAGCCTCGGTTGCACCATTTCCATTCCATATCGTTTGATCACACCACCCCTCCAGCTGCCCGCTCTCCCACCAAAGGACTCGCTGCATCGAGATCCGGTGGTTCGCACTCATCAGAGTTTGAGAAATGGAATTGGCAATAA

Protein sequence

MFNSSQSSLNFPSFDPLFGHAFKSIISYNGSVLMLAALISLFLVTIFVLLLHIYARWFLTQARHQRRSSIAVSQVLGQPRLHHFHSISFDHTTPPAARSPTKGLAASRSGGSHSSEFEKWNWQ*

Homology

[Close]

BLAST of CsGy6G013615 vs. NCBI nr
Match: KAE8646946.1 (hypothetical protein Csa_020857 [Cucumis sativus])

HSP 1 Score: 241 bits (615), Expect = 3.87e-80
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MFNSSQSSLNFPSFDPLFGHAFKSIISYNGSVLMLAALISLFLVTIFVLLLHIYARWFLT 60
           MFNSSQSSLNFPSFDPLFGHAFKSIISYNGSVLMLAALISLFLVTIFVLLLHIYARWFLT
Sbjct: 1   MFNSSQSSLNFPSFDPLFGHAFKSIISYNGSVLMLAALISLFLVTIFVLLLHIYARWFLT 60

Query: 61  QARHQRRSSIAVSQVLGQPRLHHFHSISFDHTTPPAARSPTKGLAASRSGGSHSSEFEKW 120
           QARHQRRSSIAVSQVLGQPRLHHFHSISFDHTTPPAARSPTKGLAASRSGGSHSSEFEKW
Sbjct: 61  QARHQRRSSIAVSQVLGQPRLHHFHSISFDHTTPPAARSPTKGLAASRSGGSHSSEFEKW 120

Query: 121 NWQ 123
           NWQ
Sbjct: 121 NWQ 123

[Close]

BLAST of CsGy6G013615 vs. NCBI nr
Match: KAA0067318.1 (RING-H2 finger protein ATL63-like [Cucumis melo var. makuwa] >TYK08998.1 RING-H2 finger protein ATL63-like [Cucumis melo var. makuwa])

HSP 1 Score: 186 bits (471), Expect = 3.73e-57
Identity = 99/107 (92.52%), Postives = 101/107 (94.39%), Query Frame = 0


Query: 1   MFNSSQSSLNFPSFDPLFGHAFKSIISYNGSVLMLAALISLFLVTIFVLLLHIYARWFLT 60
           MFNSS SS NFPSFDPLFGH FKSIISYNGSVLMLAALISL LVT+FVLLLHIYA+WFLT
Sbjct: 1   MFNSSLSSPNFPSFDPLFGHVFKSIISYNGSVLMLAALISLLLVTVFVLLLHIYAKWFLT 60

Query: 61  QARHQRRSSIAVSQVLGQPRLHHFHSISFDHTTPPAARSPTKGLAAS 107
           QARHQRRSSIAVSQVLGQPRLHHFHSISFDHTTPPA RSPTKGL AS
Sbjct: 61  QARHQRRSSIAVSQVLGQPRLHHFHSISFDHTTPPA-RSPTKGLDAS 106

[Close]

BLAST of CsGy6G013615 vs. NCBI nr
Match: XP_023007292.1 (RING-H2 finger protein ATL63-like [Cucurbita maxima])

HSP 1 Score: 155 bits (393), Expect = 8.68e-46
Identity = 90/107 (84.11%), Postives = 97/107 (90.65%), Query Frame = 0


Query: 1   MFNSSQSSLNFPSFDPLFGHAFKSIISYNGSVLMLAALISLFLVTIFVLLLHIYARWFLT 60
           MFNS+QS L+F SF PL GHAF+S++SYNGSV MLAALISL LVTIFVLLLHIYA+WFL+
Sbjct: 1   MFNSAQS-LSFSSFYPL-GHAFRSLLSYNGSV-MLAALISLLLVTIFVLLLHIYAKWFLS 60

Query: 61  QARHQRRSSIAVSQVLGQPRLHHFHSISFDHTTPPAARSPTKGLAAS 107
           QARHQRRSSIAVSQVLGQPRLHHFHSISFDHT P  ARSPTKGL AS
Sbjct: 61  QARHQRRSSIAVSQVLGQPRLHHFHSISFDHTPP--ARSPTKGLEAS 102

[Close]

BLAST of CsGy6G013615 vs. NCBI nr
Match: XP_022947659.1 (RING-H2 finger protein ATL63-like [Cucurbita moschata])

HSP 1 Score: 152 bits (385), Expect = 1.42e-44
Identity = 89/107 (83.18%), Postives = 96/107 (89.72%), Query Frame = 0


Query: 1   MFNSSQSSLNFPSFDPLFGHAFKSIISYNGSVLMLAALISLFLVTIFVLLLHIYARWFLT 60
           MFNS+QS L+F SF PL GHAF+S++SYNGSV MLAALISL LVTIFVLLLHIYA+WFL+
Sbjct: 1   MFNSAQS-LSFSSFYPL-GHAFRSLLSYNGSV-MLAALISLLLVTIFVLLLHIYAKWFLS 60

Query: 61  QARHQRRSSIAVSQVLGQPRLHHFHSISFDHTTPPAARSPTKGLAAS 107
           QARHQ RSSIAVSQVLGQPRLHHFHSISFDHT P  ARSPTKGL AS
Sbjct: 61  QARHQGRSSIAVSQVLGQPRLHHFHSISFDHTPP--ARSPTKGLDAS 102

[Close]

BLAST of CsGy6G013615 vs. NCBI nr
Match: XP_022148336.1 (RING-H2 finger protein ATL63-like [Momordica charantia])

HSP 1 Score: 143 bits (361), Expect = 8.57e-40
Identity = 82/107 (76.64%), Postives = 91/107 (85.05%), Query Frame = 0


Query: 1   MFNSSQSSLNFPSFDPLFGHAFKSIISYNGSVLMLAALISLFLVTIFVLLLHIYARWFLT 60
           MFNSSQS L+ PSFDPL  H F+SI+SYNGSV MLA LISL LVTIFV+LLHIYA+WFL 
Sbjct: 53  MFNSSQS-LSLPSFDPL-SHPFRSILSYNGSV-MLAGLISLLLVTIFVVLLHIYAKWFLA 112

Query: 61  QARHQRRSSIAVSQVLGQPRLHHFHSISFDHTTPPAARSPTKGLAAS 107
           QARHQR +SI V+QVLGQPRLHHFHSISFDH++ P   SPTKGL AS
Sbjct: 113 QARHQRGNSITVTQVLGQPRLHHFHSISFDHSSSPTG-SPTKGLDAS 155

[Close]

BLAST of CsGy6G013615 vs. ExPASy TrEMBL
Match: A0A0A0KBL6 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G182680 PE=4 SV=1)

HSP 1 Score: 205 bits (521), Expect = 4.24e-65
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MFNSSQSSLNFPSFDPLFGHAFKSIISYNGSVLMLAALISLFLVTIFVLLLHIYARWFLT 60
           MFNSSQSSLNFPSFDPLFGHAFKSIISYNGSVLMLAALISLFLVTIFVLLLHIYARWFLT
Sbjct: 1   MFNSSQSSLNFPSFDPLFGHAFKSIISYNGSVLMLAALISLFLVTIFVLLLHIYARWFLT 60

Query: 61  QARHQRRSSIAVSQVLGQPRLHHFHSISFDHTTPPAARSPTKGLAAS 107
           QARHQRRSSIAVSQVLGQPRLHHFHSISFDHTTPPAARSPTKGLAAS
Sbjct: 61  QARHQRRSSIAVSQVLGQPRLHHFHSISFDHTTPPAARSPTKGLAAS 107

[Close]

BLAST of CsGy6G013615 vs. ExPASy TrEMBL
Match: A0A5A7VHV8 (RING-H2 finger protein ATL63-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold615G00250 PE=4 SV=1)

HSP 1 Score: 186 bits (471), Expect = 1.81e-57
Identity = 99/107 (92.52%), Postives = 101/107 (94.39%), Query Frame = 0


Query: 1   MFNSSQSSLNFPSFDPLFGHAFKSIISYNGSVLMLAALISLFLVTIFVLLLHIYARWFLT 60
           MFNSS SS NFPSFDPLFGH FKSIISYNGSVLMLAALISL LVT+FVLLLHIYA+WFLT
Sbjct: 1   MFNSSLSSPNFPSFDPLFGHVFKSIISYNGSVLMLAALISLLLVTVFVLLLHIYAKWFLT 60

Query: 61  QARHQRRSSIAVSQVLGQPRLHHFHSISFDHTTPPAARSPTKGLAAS 107
           QARHQRRSSIAVSQVLGQPRLHHFHSISFDHTTPPA RSPTKGL AS
Sbjct: 61  QARHQRRSSIAVSQVLGQPRLHHFHSISFDHTTPPA-RSPTKGLDAS 106

[Close]

BLAST of CsGy6G013615 vs. ExPASy TrEMBL
Match: A0A6J1KY98 (RING-H2 finger protein ATL63-like OS=Cucurbita maxima OX=3661 GN=LOC111499833 PE=4 SV=1)

HSP 1 Score: 155 bits (393), Expect = 4.20e-46
Identity = 90/107 (84.11%), Postives = 97/107 (90.65%), Query Frame = 0


Query: 1   MFNSSQSSLNFPSFDPLFGHAFKSIISYNGSVLMLAALISLFLVTIFVLLLHIYARWFLT 60
           MFNS+QS L+F SF PL GHAF+S++SYNGSV MLAALISL LVTIFVLLLHIYA+WFL+
Sbjct: 1   MFNSAQS-LSFSSFYPL-GHAFRSLLSYNGSV-MLAALISLLLVTIFVLLLHIYAKWFLS 60

Query: 61  QARHQRRSSIAVSQVLGQPRLHHFHSISFDHTTPPAARSPTKGLAAS 107
           QARHQRRSSIAVSQVLGQPRLHHFHSISFDHT P  ARSPTKGL AS
Sbjct: 61  QARHQRRSSIAVSQVLGQPRLHHFHSISFDHTPP--ARSPTKGLEAS 102

[Close]

BLAST of CsGy6G013615 vs. ExPASy TrEMBL
Match: A0A6J1G7H0 (RING-H2 finger protein ATL63-like OS=Cucurbita moschata OX=3662 GN=LOC111451456 PE=4 SV=1)

HSP 1 Score: 152 bits (385), Expect = 6.90e-45
Identity = 89/107 (83.18%), Postives = 96/107 (89.72%), Query Frame = 0


Query: 1   MFNSSQSSLNFPSFDPLFGHAFKSIISYNGSVLMLAALISLFLVTIFVLLLHIYARWFLT 60
           MFNS+QS L+F SF PL GHAF+S++SYNGSV MLAALISL LVTIFVLLLHIYA+WFL+
Sbjct: 1   MFNSAQS-LSFSSFYPL-GHAFRSLLSYNGSV-MLAALISLLLVTIFVLLLHIYAKWFLS 60

Query: 61  QARHQRRSSIAVSQVLGQPRLHHFHSISFDHTTPPAARSPTKGLAAS 107
           QARHQ RSSIAVSQVLGQPRLHHFHSISFDHT P  ARSPTKGL AS
Sbjct: 61  QARHQGRSSIAVSQVLGQPRLHHFHSISFDHTPP--ARSPTKGLDAS 102

[Close]

BLAST of CsGy6G013615 vs. ExPASy TrEMBL
Match: A0A6J1D525 (RING-H2 finger protein ATL63-like OS=Momordica charantia OX=3673 GN=LOC111017016 PE=4 SV=1)

HSP 1 Score: 143 bits (361), Expect = 4.15e-40
Identity = 82/107 (76.64%), Postives = 91/107 (85.05%), Query Frame = 0


Query: 1   MFNSSQSSLNFPSFDPLFGHAFKSIISYNGSVLMLAALISLFLVTIFVLLLHIYARWFLT 60
           MFNSSQS L+ PSFDPL  H F+SI+SYNGSV MLA LISL LVTIFV+LLHIYA+WFL 
Sbjct: 53  MFNSSQS-LSLPSFDPL-SHPFRSILSYNGSV-MLAGLISLLLVTIFVVLLHIYAKWFLA 112

Query: 61  QARHQRRSSIAVSQVLGQPRLHHFHSISFDHTTPPAARSPTKGLAAS 107
           QARHQR +SI V+QVLGQPRLHHFHSISFDH++ P   SPTKGL AS
Sbjct: 113 QARHQRGNSITVTQVLGQPRLHHFHSISFDHSSSPTG-SPTKGLDAS 155

The following BLAST results are available for this feature:

BLAST of CsGy6G013615 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy6G013615 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646946.1	3.87e-80	100.00	hypothetical protein Csa_020857 [Cucumis sativus]	[more]
KAA0067318.1	3.73e-57	92.52	RING-H2 finger protein ATL63-like [Cucumis melo var. makuwa] >TYK08998.1 RING-H2...	[more]
XP_023007292.1	8.68e-46	84.11	RING-H2 finger protein ATL63-like [Cucurbita maxima]	[more]
XP_022947659.1	1.42e-44	83.18	RING-H2 finger protein ATL63-like [Cucurbita moschata]	[more]
XP_022148336.1	8.57e-40	76.64	RING-H2 finger protein ATL63-like [Momordica charantia]	[more]

BLAST of CsGy6G013615 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBL6	4.24e-65	100.00	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G182680 P...	[more]
A0A5A7VHV8	1.81e-57	92.52	RING-H2 finger protein ATL63-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A6J1KY98	4.20e-46	84.11	RING-H2 finger protein ATL63-like OS=Cucurbita maxima OX=3661 GN=LOC111499833 PE...	[more]
A0A6J1G7H0	6.90e-45	83.18	RING-H2 finger protein ATL63-like OS=Cucurbita moschata OX=3662 GN=LOC111451456 ...	[more]
A0A6J1D525	4.15e-40	76.64	RING-H2 finger protein ATL63-like OS=Momordica charantia OX=3673 GN=LOC111017016...	[more]

BLAST of CsGy6G013615 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..123
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 1..107
None	No IPR available	PANTHER	PTHR14155:SF514	CHROMATIN REGULATOR PHD FAMILY-RELATED	coord: 1..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G013615.1	CsGy6G013615.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane