CsGy6G013370 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G013370
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	protodermal factor 1-like
Location	Gy14Chr6: 11840218 .. 11844288 (-)
RNA-Seq Expression	CsGy6G013370
Synteny	CsGy6G013370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAGACAGAAATGAACCAGAACCAAAATGGCCCAGAGTAGCATTACAATTTTGAATTATATATCATAATAGCTATACTATGGAGACTATATCTAATAAATTTATCAGGAGAAATGTGAGGTTCAAAATTTCAAAGGCATGCATGTGATTTCACCTCCCCCCCCAATGAATTCATCCCTGGAAAATTTGAACATTATTTGAAACAATTAAAAGCAGCAAGCAATATGAATAAATGCACCAATAAAACAGCAACTAACCACATACTCTTCCACCTGTAAGAAGTAACTTCACTTTCCCTCATCCCCCCCTTCTATATATTCCCCCATTTGTTCTAAACATTCCATCCATCACCATTACCATTCCTTCCCTTCTTTCCCATCTCTAATCCCTTTGCTCCCAATCAGAAAAACAACCAACCGAAGAAACACAACCATGAGAAGCAAACAAGTTTCTGCTCTCGTTTTCACTTTGCTTGCTGGGCTGCTTTCTCAAAGCCTACTCATCCCTGTATTGTCCACCTCCATTGCTGATCAGAAAAGCTACTACTCTCCTCCAGACCCACATTCTGGATCTCCTCCATCAGGTTATTGCACATTCACAATGAATCTCACACATTCAGTACCAGTATTAGTAGTAATGGTAGTGATTAGTAGGCTTACAGCATTATTTGTTTACTTTGCATTGCAGGTTCACATAGCAGCCCTATGCCACCATCACATGGTAGTGGAGGAACGCCACATTACTCCACACCAACTCCTTCCACACCATCAAATCCGCCGTCTGGTGGTGGTGGATACTACAACCCTCCGTCTTCTGGTGGTAGCCCACCAAGCACCCCTGTAGATCCAGGCACTCCTAGCACTCCAAGCACTCCTAGTGTTCCTAGCACACCAACCACACCTACCATTCCCACTATTCCATTTACCTGCACGTAAGTCAAGGGTTTTTAGTAACTGTTTTCCATGGAGAAGAGAACATATTTGTTTATAAAAATGTGTTTGTTACTTTGTTTGCAGTTATTGGCTGAATCATCCAGGATTGATATGGGGAGTATTGGGATGGTGGGGAACATTAGGAAATGCCTTCGGAGCAACCAATGTCCCAGGGTTTGGAACAAATCTCAACTTGCTCCAAGCACTATCTAACACAAGGAATGATGGGTATGGGGCTCTTTTGAGAGAAGGAACTGCTTCGTACCTCAACTCTCTTGCTAGTAACAGATTCCCCTACACAACTAAGCAAGTTAGGACAAGTTTCGTCTCGGCACTCAGCTCCAACAAAGCAGCAGGCAGTCAGGCCAACACGTTCAAGTTAGCCAACGAGGGCAAAATTAAACCCAGAGCTTGATTTCCCCCCTTTTTCCTACCATTTACCATCTTAATAACTAATGAGTGTGCCTTAGCAGTTAGTAGTGAGACAGTGAGACCAATTTACCATTGCATGTGTTTTGTTTTATTTTGTTTTTGTTTCTAGTTTCTTGCAATCTCTTTTGTTCATGTATTTGAACATAGAGATGCTCAGTCTTTGTTATCCAAATTCATTGTGAAATCAAGATTTGTTTCAAGTACTTAAATTTATTTAATCATATTATCCAAAAGGGGGTTGAAAATTAAAAGTTCAGATGCTTGTTATCTACACTAATCTATTGTTTCTATCACTATGCTTTAAAAGGATAGTAAAATCCATGCAGAGTTTGTATTTATGGCGCATTAATGAGGAAATGCACTACATTCAATAAGGTTAACCTACAAAAGAACAAACAACTTGGGATGCCCTTGGGTTGGATTTAAAGACCAGAGCTTGATTTTGTGAACAGTATAAATGCTAAATCTGAAATATCAACGGTGTAAAAGGGAGACATAATAGAGTAAGTGCAGTAAACAAACTCATATAGATGAAAAAAGCCAACAGCCATTAGGAAACGTCTGGTCCGGTGCTCTGAGAAGGTGGGTCCGCGTAGTTAAGAATTCCCATTAAGCCAACCACCCAAGATATTTTACCTTGAAAAACAGCAGGAAAAGTAATAATAGAAACATAAACTCATATGCCGTTAACAAAAAGTTCAGTTGTTCATAGCCATAAATTTAGTTTGATAATCTTCTTGCGCCAATGGAGATTCAATCGTTCCTTGGATGGAAGAACAATATGACAGTATTTCAAATAAAGTACCAAACAACATTTCACATTGAAGATTAAATTGTAGACCACCAAGCACCAGCCAGAACAACAAAATGGGAGTTGAACTTTATCATTTATTCACGTTATTACTTCAACTTTCTTAACAGAACAGTGAAGAAATGGATACTAAACCATCGCCACTAGCATTACAAAAATTGTGGATGAAAAACTGTTATCTGTACATTTTCTTCAAGTGCGTGTGCTTGGAAAGGTGTTTGTCCTAAGAACCTGGATTTTCTTTAAATGTTGATAGAATCAACTCAAGTAAAGTGAGATTCAAACCATGTGAAGATCTTGTCAGCCTCTAAGCTAGTCATTTCGTGGTATGCAAAGGCAAGATTCAACTCTTCTTGAATGTGATTGGTTAAACTATTATCAGGTAAACTAATCCCACTGGCCTTCAGGGCTTCTTTCCACCGTGTTGCGCGTCCATCTTTGAGCATCTTTCCATTTCCATCTACAAAGCCCTTGGCTTGGAAAAGCTCAAACAACTTTGCAGAAACACTCTTGTCAAGTCCTGGGATTCGGTCAGCCAAAAAATGTGGCGACAGAGCAAACTCTAAGCATTCAATCTCAGCAACATCAATTCCTTTACCTTTCAAAAACTCCATATTTTCATTGATCTTTTGTTGCCTAAAATGATCTTTAGGCATGTGTACAAACAGAGTAGGTGGGTATCTCTCTGTTACCTCCATTTGTTCATACAACCCTTCGGCAATCATCAACGTAATGCTATCAAATTTGAACTTAGTGGCAAGTACCGAAAGAAAATACCCACCAGAGGAGGCACCTAAACCCACAAGAGGAAGTTTCTCAAGTTTGTTCTTTTCAACCCACCAACGTATGATGTCTTTAACAACTGCCAATTCCTTCCCCAATGTCCAACATTTCTGTGAGCTTGATATTGTAAGAACTGCAAAATGTTTGCTGAGAGCATGAAGGACAATCAACCGTTCTTCAGGCAGACCGACACAAGAAGGACATTCAGGAGATCTGTCCCAGAAGTTGACAGCTTTACCATTGCAGCCATGAGCAAAGAACAAAACAGACTTTGGAGAATCAGGAATTTGCGATATTATATCAGTTCCATTGCGAAACTCTCTATTTGGATTAAATTGCACAAGAGAGTTAAAGCTATCCCATTTCTGCTTTGGAGTCGCCTCAACTAAAATATCATGTTCTTGAGACTCCTTGCGAAATAACATCATCAATACAAAAAGGATAAGAAAAGCAGACACGATAAGAATCGAGATTTTCTGCTGTTTGTACCATGCCTTTGACTTGTTTCCATGCTTCACCATACCTGAAGAAAGAAAGACGTCGCATTCTATTAAGATCATCATAAATAATTTCAAACCTACAAGTGATGCGATCAGTTAGATTAGAACCTCATAGAAGAATCACATTCAGTATAGCACATCCCATTCCTTCCTCCTCACAAAACGAAAAAAAATGATACAACATCTAAACACAGGGCTTAATTTTTTTTTTTTGACGGAAACATGTTCAATTAACATAATTACAATCGGTGTCAATAATTAGAAAGAATAAAGCAAAGCAATTTGAGGAGCTAATTCTTACTGATTCAGAAACATTGCAACGTGGGATTGCACGCAATGATCACAAAACAAAAGATGAAGACGACCAATGTTCATTTCTCTTCACCCATTTAAACCCCTTTCGTTCTCCAACAAAACAAACGCATAATTTCTGAAGTTGGATCGAGGAATGGCACAAATTAAATGAACAGAGAGAATGTTACCTTGGCTTGGGTTATGAATTCAAAAAGACAAATCTGACGTTTGAACTCAGCTGCGAGTGTTGAAAAAAACTCTCCCACCCCAACCGCCAAAATAGAAAAAGGAAAACGAAAAGCTAACACACACAATCGAAG

mRNA sequence

ATAGACAGAAATGAACCAGAACCAAAATGGCCCAGAGTAGCATTACAATTTTGAATTATATATCATAATAGCTATACTATGGAGACTATATCTAATAAATTTATCAGGAGAAATGTGAGGTTCAAAATTTCAAAGGCATGCATGTGATTTCACCTCCCCCCCCAATGAATTCATCCCTGGAAAATTTGAACATTATTTGAAACAATTAAAAGCAGCAAGCAATATGAATAAATGCACCAATAAAACAGCAACTAACCACATACTCTTCCACCTGTAAGAAGTAACTTCACTTTCCCTCATCCCCCCCTTCTATATATTCCCCCATTTGTTCTAAACATTCCATCCATCACCATTACCATTCCTTCCCTTCTTTCCCATCTCTAATCCCTTTGCTCCCAATCAGAAAAACAACCAACCGAAGAAACACAACCATGAGAAGCAAACAAGTTTCTGCTCTCGTTTTCACTTTGCTTGCTGGGCTGCTTTCTCAAAGCCTACTCATCCCTGTATTGTCCACCTCCATTGCTGATCAGAAAAGCTACTACTCTCCTCCAGACCCACATTCTGGATCTCCTCCATCAGGTTCACATAGCAGCCCTATGCCACCATCACATGGTAGTGGAGGAACGCCACATTACTCCACACCAACTCCTTCCACACCATCAAATCCGCCGTCTGGTGGTGGTGGATACTACAACCCTCCGTCTTCTGGTGGTAGCCCACCAAGCACCCCTGTAGATCCAGGCACTCCTAGCACTCCAAGCACTCCTAGTGTTCCTAGCACACCAACCACACCTACCATTCCCACTATTCCATTTACCTGCACTTATTGGCTGAATCATCCAGGATTGATATGGGGAGTATTGGGATGGTGGGGAACATTAGGAAATGCCTTCGGAGCAACCAATGTCCCAGGGTTTGGAACAAATCTCAACTTGCTCCAAGCACTATCTAACACAAGGAATGATGGGTATGGGGCTCTTTTGAGAGAAGGAACTGCTTCGTACCTCAACTCTCTTGCTAGTAACAGATTCCCCTACACAACTAAGCAAGTTAGGACAAGTTTCGTCTCGGCACTCAGCTCCAACAAAGCAGCAGGCAGTCAGGCCAACACGTTCAAGTTAGCCAACGAGGGCAAAATTAAACCCAGAGCTTGATTTCCCCCCTTTTTCCTACCATTTACCATCTTAATAACTAATGAGTGTGCCTTAGCAGTTAGTAGTGAGACAGTGAGACCAATTTACCATTGCATGTGTTTTGTTTTATTTTGTTTTTGTTTCTAGTTTCTTGCAATCTCTTTTGTTCATGTATTTGAACATAGAGATGCTCAGTCTTTGTTATCCAAATTCATTGTGAAATCAAGATTTGTTTCAAGTACTTAAATTTATTTAATCATATTATCCAAAAGGGGGTTGAAAATTAAAAGTTCAGATGCTTGTTATCTACACTAATCTATTGTTTCTATCACTATGCTTTAAAAGGATAGTAAAATCCATGCAGAGTTTGTATTTATGGCGCATTAATGAGGAAATGCACTACATTCAATAAGGTTAACCTACAAAAGAACAAACAACTTGGGATGCCCTTGGGTTGGATTTAAAGACCAGAGCTTGATTTTGTGAACAGTATAAATGCTAAATCTGAAATATCAACGGTGTAAAAGGGAGACATAATAGAGTAAGTGCAGTAAACAAACTCATATAGATGAAAAAAGCCAACAGCCATTAGGAAACGTCTGGTCCGGTGCTCTGAGAAGGTGGGTCCGCGTAGTTAAGAATTCCCATTAAGCCAACCACCCAAGATATTTTACCTTGAAAAACAGCAGGAAAAGTAATAATAGAAACATAAACTCATATGCCGTTAACAAAAAGTTCAGTTGTTCATAGCCATAAATTTAGTTTGATAATCTTCTTGCGCCAATGGAGATTCAATCGTTCCTTGGATGGAAGAACAATATGACAGTATTTCAAATAAAGTACCAAACAACATTTCACATTGAAGATTAAATTGTAGACCACCAAGCACCAGCCAGAACAACAAAATGGGAGTTGAACTTTATCATTTATTCACGTTATTACTTCAACTTTCTTAACAGAACAGTGAAGAAATGGATACTAAACCATCGCCACTAGCATTACAAAAATTGTGGATGAAAAACTGTTATCTGTACATTTTCTTCAAGTGCGTGTGCTTGGAAAGGTGTTTGTCCTAAGAACCTGGATTTTCTTTAAATGTTGATAGAATCAACTCAAGTAAAGTGAGATTCAAACCATGTGAAGATCTTGTCAGCCTCTAAGCTAGTCATTTCGTGGTATGCAAAGGCAAGATTCAACTCTTCTTGAATGTGATTGGTTAAACTATTATCAGGTAAACTAATCCCACTGGCCTTCAGGGCTTCTTTCCACCGTGTTGCGCGTCCATCTTTGAGCATCTTTCCATTTCCATCTACAAAGCCCTTGGCTTGGAAAAGCTCAAACAACTTTGCAGAAACACTCTTGTCAAGTCCTGGGATTCGGTCAGCCAAAAAATGTGGCGACAGAGCAAACTCTAAGCATTCAATCTCAGCAACATCAATTCCTTTACCTTTCAAAAACTCCATATTTTCATTGATCTTTTGTTGCCTAAAATGATCTTTAGGCATGTGTACAAACAGAGTAGGTGGGTATCTCTCTGTTACCTCCATTTGTTCATACAACCCTTCGGCAATCATCAACGTAATGCTATCAAATTTGAACTTAGTGGCAAGTACCGAAAGAAAATACCCACCAGAGGAGGCACCTAAACCCACAAGAGGAAGTTTCTCAAGTTTGTTCTTTTCAACCCACCAACGTATGATGTCTTTAACAACTGCCAATTCCTTCCCCAATGTCCAACATTTCTGTGAGCTTGATATTGTAAGAACTGCAAAATGTTTGCTGAGAGCATGAAGGACAATCAACCGTTCTTCAGGCAGACCGACACAAGAAGGACATTCAGGAGATCTGTCCCAGAAGTTGACAGCTTTACCATTGCAGCCATGAGCAAAGAACAAAACAGACTTTGGAGAATCAGGAATTTGCGATATTATATCAGTTCCATTGCGAAACTCTCTATTTGGATTAAATTGCACAAGAGAGTTAAAGCTATCCCATTTCTGCTTTGGAGTCGCCTCAACTAAAATATCATGTTCTTGAGACTCCTTGCGAAATAACATCATCAATACAAAAAGGATAAGAAAAGCAGACACGATAAGAATCGAGATTTTCTGCTGTTTGTACCATGCCTTTGACTTGTTTCCATGCTTCACCATACCTGAAGAAAGAAAGACGTCGCATTCTATTAAGATCATCATAAATAATTTCAAACCTACAAGTGATGCGATCAGTTAGATTAGAACCTCATAGAAGAATCACATTCAGTATAGCACATCCCATTCCTTCCTCCTCACAAAACGAAAAAAAATGATACAACATCTAAACACAGGGCTTAATTTTTTTTTTTTGACGGAAACATGTTCAATTAACATAATTACAATCGGTGTCAATAATTAGAAAGAATAAAGCAAAGCAATTTGAGGAGCTAATTCTTACTGATTCAGAAACATTGCAACGTGGGATTGCACGCAATGATCACAAAACAAAAGATGAAGACGACCAATGTTCATTTCTCTTCACCCATTTAAACCCCTTTCGTTCTCCAACAAAACAAACGCATAATTTCTGAAGTTGGATCGAGGAATGGCACAAATTAAATGAACAGAGAGAATGTTACCTTGGCTTGGGTTATGAATTCAAAAAGACAAATCTGACGTTTGAACTCAGCTGCGAGTGTTGAAAAAAACTCTCCCACCCCAACCGCCAAAATAGAAAAAGGAAAACGAAAAGCTAACACACACAATCGAAG

Coding sequence (CDS)

ATGAGAAGCAAACAAGTTTCTGCTCTCGTTTTCACTTTGCTTGCTGGGCTGCTTTCTCAAAGCCTACTCATCCCTGTATTGTCCACCTCCATTGCTGATCAGAAAAGCTACTACTCTCCTCCAGACCCACATTCTGGATCTCCTCCATCAGGTTCACATAGCAGCCCTATGCCACCATCACATGGTAGTGGAGGAACGCCACATTACTCCACACCAACTCCTTCCACACCATCAAATCCGCCGTCTGGTGGTGGTGGATACTACAACCCTCCGTCTTCTGGTGGTAGCCCACCAAGCACCCCTGTAGATCCAGGCACTCCTAGCACTCCAAGCACTCCTAGTGTTCCTAGCACACCAACCACACCTACCATTCCCACTATTCCATTTACCTGCACTTATTGGCTGAATCATCCAGGATTGATATGGGGAGTATTGGGATGGTGGGGAACATTAGGAAATGCCTTCGGAGCAACCAATGTCCCAGGGTTTGGAACAAATCTCAACTTGCTCCAAGCACTATCTAACACAAGGAATGATGGGTATGGGGCTCTTTTGAGAGAAGGAACTGCTTCGTACCTCAACTCTCTTGCTAGTAACAGATTCCCCTACACAACTAAGCAAGTTAGGACAAGTTTCGTCTCGGCACTCAGCTCCAACAAAGCAGCAGGCAGTCAGGCCAACACGTTCAAGTTAGCCAACGAGGGCAAAATTAAACCCAGAGCTTGA

Protein sequence

MRSKQVSALVFTLLAGLLSQSLLIPVLSTSIADQKSYYSPPDPHSGSPPSGSHSSPMPPSHGSGGTPHYSTPTPSTPSNPPSGGGGYYNPPSSGGSPPSTPVDPGTPSTPSTPSVPSTPTTPTIPTIPFTCTYWLNHPGLIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRNDGYGALLREGTASYLNSLASNRFPYTTKQVRTSFVSALSSNKAAGSQANTFKLANEGKIKPRA*

Homology

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BLAST of CsGy6G013370 vs. ExPASy Swiss-Prot
Match: Q9S728 (Protodermal factor 1 OS=Arabidopsis thaliana OX=3702 GN=PDF1 PE=2 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.7e-46
Identity = 142/303 (46.86%), Postives = 170/303 (56.11%), Query Frame = 0


Query: 6   VSALVFTLLAGLLSQSLLIPVLSTSIADQKSYY-SPPDPHSGSPPS-------------- 65
           VS  V+ L A LLSQ L   V S    D K+YY SPP    G+PPS              
Sbjct: 5   VSFAVWALFAALLSQQLFASVASVRFEDAKTYYLSPPSGSHGTPPSHTPPSSNCGSPPYD 64

Query: 66  ---GSHSSPMPPSH---------------------------GSGGTP-------HYSTPT 125
               + S P PPSH                             G  P       H STP+
Sbjct: 65  PSPSTPSHPSPPSHTPTPSTPSHTPTPHTPSHTPTPHTPPCNCGSPPSHPSTPSHPSTPS 124

Query: 126 PSTPSNPPSGGGGYYNPPSSGG----SPPSTPVDPGTP---STPSTPSV-PSTPTTPTIP 185
             TPS+PPS  GGYY+ P        +PPS  VDPGTP    +P TP + P TP TP IP
Sbjct: 125 HPTPSHPPS--GGYYSSPPPRTPVVVTPPSPIVDPGTPIIGGSPPTPIIDPGTPGTPFIP 184

Query: 186 T----IPFTCTYWLNHPGLIWGVLGWWGTLGNAFGA----TNVPGFGTNLNLLQALSNTR 241
                I  TC YW NHP LIWG+LGWWGT+G AFG     +++PGF  ++NLLQALSNTR
Sbjct: 185 APFPPITGTCDYWRNHPTLIWGLLGWWGTVGGAFGTVSIPSSIPGFDPHMNLLQALSNTR 244

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BLAST of CsGy6G013370 vs. NCBI nr
Match: XP_004143175.1 (protodermal factor 1 [Cucumis sativus] >KGN47037.1 hypothetical protein Csa_020699 [Cucumis sativus])

HSP 1 Score: 457 bits (1176), Expect = 8.52e-162
Identity = 240/241 (99.59%), Postives = 241/241 (100.00%), Query Frame = 0


Query: 1   MRSKQVSALVFTLLAGLLSQSLLIPVLSTSIADQKSYYSPPDPHSGSPPSGSHSSPMPPS 60
           MRSKQVSALVFTLLAGLLSQSLLIPVLSTSIADQKSYYSPPDPHSGSPPSGSHSSPMPPS
Sbjct: 1   MRSKQVSALVFTLLAGLLSQSLLIPVLSTSIADQKSYYSPPDPHSGSPPSGSHSSPMPPS 60

Query: 61  HGSGGTPHYSTPTPSTPSNPPSGGGGYYNPPSSGGSPPSTPVDPGTPSTPSTPSVPSTPT 120
           HGSGGTPHYSTPTPSTPSNPPSGGGGYYNPPSSGGSPPSTPVDPGTPSTPSTPSVPSTPT
Sbjct: 61  HGSGGTPHYSTPTPSTPSNPPSGGGGYYNPPSSGGSPPSTPVDPGTPSTPSTPSVPSTPT 120

Query: 121 TPTIPTIPFTCTYWLNHPGLIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRNDG 180
           TPTIPTIPFTCTYWLNHPGLIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRNDG
Sbjct: 121 TPTIPTIPFTCTYWLNHPGLIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRNDG 180

Query: 181 YGALLREGTASYLNSLASNRFPYTTKQVRTSFVSALSSNKAAGSQANTFKLANEGKIKPR 240
           YGALLREGTASYLNSLASNRFPYTTKQVRTSFVSALSSNKAAG+QANTFKLANEGKIKPR
Sbjct: 181 YGALLREGTASYLNSLASNRFPYTTKQVRTSFVSALSSNKAAGNQANTFKLANEGKIKPR 240

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BLAST of CsGy6G013370 vs. NCBI nr
Match: XP_008456355.1 (PREDICTED: protodermal factor 1-like [Cucumis melo] >KAA0054578.1 protodermal factor 1-like [Cucumis melo var. makuwa] >TYK27542.1 protodermal factor 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 430 bits (1106), Expect = 3.44e-151
Identity = 227/241 (94.19%), Postives = 231/241 (95.85%), Query Frame = 0


Query: 1   MRSKQVSALVFTLLAGLLSQSLLIPVLSTSIADQKSYYSPPDPHSGSPPSGSHSSPMPPS 60
           MRSKQ SAL+FTLLAGLLSQSLLIPVLSTSI DQKSYYSPPDPHSGSPPSGSH SP+PPS
Sbjct: 1   MRSKQASALLFTLLAGLLSQSLLIPVLSTSITDQKSYYSPPDPHSGSPPSGSHGSPIPPS 60

Query: 61  HGSGGTPHYSTPTPSTPSNPPSGGGGYYNPPSSGGSPPSTPVDPGTPSTPSTPSVPSTPT 120
           HG+GGTPHYSTPTPSTPS    GGGGYYNPPSSGGSPPSTPVDPGTPSTPSTPSVPSTP+
Sbjct: 61  HGNGGTPHYSTPTPSTPS----GGGGYYNPPSSGGSPPSTPVDPGTPSTPSTPSVPSTPS 120

Query: 121 TPTIPTIPFTCTYWLNHPGLIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRNDG 180
           TPTIPT PFTC YWLNHPGLIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRNDG
Sbjct: 121 TPTIPTTPFTCNYWLNHPGLIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRNDG 180

Query: 181 YGALLREGTASYLNSLASNRFPYTTKQVRTSFVSALSSNKAAGSQANTFKLANEGKIKPR 240
           YGALLREGTASYLNSLASNRFPYTTKQVRTSFVSALSSNKAAG QANTFKLANEGKIKPR
Sbjct: 181 YGALLREGTASYLNSLASNRFPYTTKQVRTSFVSALSSNKAAGDQANTFKLANEGKIKPR 237

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BLAST of CsGy6G013370 vs. NCBI nr
Match: XP_038900371.1 (protodermal factor 1-like [Benincasa hispida])

HSP 1 Score: 405 bits (1042), Expect = 2.50e-141
Identity = 217/244 (88.93%), Postives = 229/244 (93.85%), Query Frame = 0


Query: 1   MRSKQVSALVFTLLAGLLSQSLLIPVLSTSIADQKSYYSPP-DPHSGSPPSGSHSSPMPP 60
           MR+KQ S L+FTLLAGLLSQSLLIPV STSIADQKSYYSPP DPHSG+PP+GSHSSP+PP
Sbjct: 1   MRTKQASVLLFTLLAGLLSQSLLIPVFSTSIADQKSYYSPPSDPHSGTPPTGSHSSPIPP 60

Query: 61  SHGSGGTP-HYSTPTPSTPSNPPSGGGGYYNPPSSGG-SPPSTPVDPGTPSTPSTPSVPS 120
           SHG GG+P HYSTPTPSTPS PPS GGGYYNPPSSGG SPP+TPVDPGTPSTPSTP VPS
Sbjct: 61  SHGYGGSPPHYSTPTPSTPSKPPSSGGGYYNPPSSGGGSPPTTPVDPGTPSTPSTPGVPS 120

Query: 121 TPTTPTIPTIPFTCTYWLNHPGLIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTR 180
           TP+TP+IPT PFTC YWLNHPG+IWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTR
Sbjct: 121 TPSTPSIPTTPFTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTR 180

Query: 181 NDGYGALLREGTASYLNSLASNRFPYTTKQVRTSFVSALSSNKAAGSQANTFKLANEGKI 240
            DG+GALLREGTASYLNSLASNRFP+TTKQVRTSFVSALSSNKAA  QANTFKLANEGKI
Sbjct: 181 TDGFGALLREGTASYLNSLASNRFPFTTKQVRTSFVSALSSNKAAADQANTFKLANEGKI 240

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BLAST of CsGy6G013370 vs. NCBI nr
Match: XP_022970795.1 (protodermal factor 1-like [Cucurbita maxima])

HSP 1 Score: 376 bits (966), Expect = 1.34e-129
Identity = 202/251 (80.48%), Postives = 221/251 (88.05%), Query Frame = 0


Query: 1   MRSKQVSALVFTLLAGLLSQSLLIPVLSTSIADQKSYYSPPDPHSGSPPSGSHSSPMPPS 60
           MR+KQ S L+FTLLAGLLSQSLLIPVLST+IADQKSYYSPPDPH+G+PP+GSHS+P+PPS
Sbjct: 1   MRTKQASPLLFTLLAGLLSQSLLIPVLSTTIADQKSYYSPPDPHAGTPPTGSHSNPIPPS 60

Query: 61  HGSGGTP-HYSTPTPSTPSNPPSGGGGYYNPPSSGGSPPSTPVDPGTPSTPSTPSVPSTP 120
           HG GGTP HYSTPTPSTPS  PSG  GYYNPPSSGGS P+TPVDPGTPSTPSTPS PSTP
Sbjct: 61  HGYGGTPPHYSTPTPSTPSKSPSGRSGYYNPPSSGGSTPTTPVDPGTPSTPSTPSTPSTP 120

Query: 121 TTPTIP------------TIPFTCTYWLNHPGLIWGVLGWWGTLGNAFGATNVPGFGTNL 180
           +TP+ P            T PFTC +WLNHPG+IWGVLGWWGTLGN FGATNVPGFGTNL
Sbjct: 121 STPSTPSTPSTPSTPGTPTTPFTCNFWLNHPGMIWGVLGWWGTLGNCFGATNVPGFGTNL 180

Query: 181 NLLQALSNTRNDGYGALLREGTASYLNSLASNRFPYTTKQVRTSFVSALSSNKAAGSQAN 238
           NLLQALSNTR DG+GALLREGTASYLNSLASNRFP+TTKQV++SFVSAL+SN+AA  QAN
Sbjct: 181 NLLQALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSALNSNRAAADQAN 240

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BLAST of CsGy6G013370 vs. NCBI nr
Match: XP_022947015.1 (protodermal factor 1-like [Cucurbita moschata])

HSP 1 Score: 374 bits (959), Expect = 1.36e-128
Identity = 201/248 (81.05%), Postives = 221/248 (89.11%), Query Frame = 0


Query: 1   MRSKQVSALVFTLLAGLLSQSLLIPVLSTSIADQKSYYSPPDPHSGSPPSGSHSSPMPPS 60
           MR+KQ S L+FTLLAGLLSQSLLIPVLST+IADQKSYYSPPDPH+G+PP+GSHS+P+PPS
Sbjct: 1   MRTKQASPLLFTLLAGLLSQSLLIPVLSTTIADQKSYYSPPDPHAGTPPTGSHSNPIPPS 60

Query: 61  HGSGGTP-HYSTPTPSTPSNPPSGGGGYYNPPSSGGSPPSTPVDPGTPSTPSTPSVPSTP 120
           HG GGTP HYSTPTPSTP+  PSGG GYYNPPS GGS P+TPVDPGTPSTPSTPS PSTP
Sbjct: 61  HGYGGTPPHYSTPTPSTPTKSPSGGSGYYNPPS-GGSTPTTPVDPGTPSTPSTPSTPSTP 120

Query: 121 TTPTIP---------TIPFTCTYWLNHPGLIWGVLGWWGTLGNAFGATNVPGFGTNLNLL 180
           +TP+ P         T PFTC +WLNHPG+IWGVLGWWGTLGN FGATNVPGFGTNLNLL
Sbjct: 121 STPSTPSTPSTPGTPTTPFTCNFWLNHPGMIWGVLGWWGTLGNCFGATNVPGFGTNLNLL 180

Query: 181 QALSNTRNDGYGALLREGTASYLNSLASNRFPYTTKQVRTSFVSALSSNKAAGSQANTFK 238
           QALSNTR DG+GALLREGTASYLNSLASNRFP+TTKQV++SFVSAL+SN+AA  QAN FK
Sbjct: 181 QALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSALNSNRAAADQANIFK 240

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BLAST of CsGy6G013370 vs. ExPASy TrEMBL
Match: A0A0A0KF76 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G178950 PE=4 SV=1)

HSP 1 Score: 457 bits (1176), Expect = 4.12e-162
Identity = 240/241 (99.59%), Postives = 241/241 (100.00%), Query Frame = 0


Query: 1   MRSKQVSALVFTLLAGLLSQSLLIPVLSTSIADQKSYYSPPDPHSGSPPSGSHSSPMPPS 60
           MRSKQVSALVFTLLAGLLSQSLLIPVLSTSIADQKSYYSPPDPHSGSPPSGSHSSPMPPS
Sbjct: 1   MRSKQVSALVFTLLAGLLSQSLLIPVLSTSIADQKSYYSPPDPHSGSPPSGSHSSPMPPS 60

Query: 61  HGSGGTPHYSTPTPSTPSNPPSGGGGYYNPPSSGGSPPSTPVDPGTPSTPSTPSVPSTPT 120
           HGSGGTPHYSTPTPSTPSNPPSGGGGYYNPPSSGGSPPSTPVDPGTPSTPSTPSVPSTPT
Sbjct: 61  HGSGGTPHYSTPTPSTPSNPPSGGGGYYNPPSSGGSPPSTPVDPGTPSTPSTPSVPSTPT 120

Query: 121 TPTIPTIPFTCTYWLNHPGLIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRNDG 180
           TPTIPTIPFTCTYWLNHPGLIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRNDG
Sbjct: 121 TPTIPTIPFTCTYWLNHPGLIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRNDG 180

Query: 181 YGALLREGTASYLNSLASNRFPYTTKQVRTSFVSALSSNKAAGSQANTFKLANEGKIKPR 240
           YGALLREGTASYLNSLASNRFPYTTKQVRTSFVSALSSNKAAG+QANTFKLANEGKIKPR
Sbjct: 181 YGALLREGTASYLNSLASNRFPYTTKQVRTSFVSALSSNKAAGNQANTFKLANEGKIKPR 240

[Close]

BLAST of CsGy6G013370 vs. ExPASy TrEMBL
Match: A0A5A7UHX0 (Protodermal factor 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold22G00090 PE=4 SV=1)

HSP 1 Score: 430 bits (1106), Expect = 1.67e-151
Identity = 227/241 (94.19%), Postives = 231/241 (95.85%), Query Frame = 0


Query: 1   MRSKQVSALVFTLLAGLLSQSLLIPVLSTSIADQKSYYSPPDPHSGSPPSGSHSSPMPPS 60
           MRSKQ SAL+FTLLAGLLSQSLLIPVLSTSI DQKSYYSPPDPHSGSPPSGSH SP+PPS
Sbjct: 1   MRSKQASALLFTLLAGLLSQSLLIPVLSTSITDQKSYYSPPDPHSGSPPSGSHGSPIPPS 60

Query: 61  HGSGGTPHYSTPTPSTPSNPPSGGGGYYNPPSSGGSPPSTPVDPGTPSTPSTPSVPSTPT 120
           HG+GGTPHYSTPTPSTPS    GGGGYYNPPSSGGSPPSTPVDPGTPSTPSTPSVPSTP+
Sbjct: 61  HGNGGTPHYSTPTPSTPS----GGGGYYNPPSSGGSPPSTPVDPGTPSTPSTPSVPSTPS 120

Query: 121 TPTIPTIPFTCTYWLNHPGLIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRNDG 180
           TPTIPT PFTC YWLNHPGLIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRNDG
Sbjct: 121 TPTIPTTPFTCNYWLNHPGLIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRNDG 180

Query: 181 YGALLREGTASYLNSLASNRFPYTTKQVRTSFVSALSSNKAAGSQANTFKLANEGKIKPR 240
           YGALLREGTASYLNSLASNRFPYTTKQVRTSFVSALSSNKAAG QANTFKLANEGKIKPR
Sbjct: 181 YGALLREGTASYLNSLASNRFPYTTKQVRTSFVSALSSNKAAGDQANTFKLANEGKIKPR 237

[Close]

BLAST of CsGy6G013370 vs. ExPASy TrEMBL
Match: A0A1S3C4A9 (protodermal factor 1-like OS=Cucumis melo OX=3656 GN=LOC103496321 PE=4 SV=1)

HSP 1 Score: 430 bits (1106), Expect = 1.67e-151
Identity = 227/241 (94.19%), Postives = 231/241 (95.85%), Query Frame = 0


Query: 1   MRSKQVSALVFTLLAGLLSQSLLIPVLSTSIADQKSYYSPPDPHSGSPPSGSHSSPMPPS 60
           MRSKQ SAL+FTLLAGLLSQSLLIPVLSTSI DQKSYYSPPDPHSGSPPSGSH SP+PPS
Sbjct: 1   MRSKQASALLFTLLAGLLSQSLLIPVLSTSITDQKSYYSPPDPHSGSPPSGSHGSPIPPS 60

Query: 61  HGSGGTPHYSTPTPSTPSNPPSGGGGYYNPPSSGGSPPSTPVDPGTPSTPSTPSVPSTPT 120
           HG+GGTPHYSTPTPSTPS    GGGGYYNPPSSGGSPPSTPVDPGTPSTPSTPSVPSTP+
Sbjct: 61  HGNGGTPHYSTPTPSTPS----GGGGYYNPPSSGGSPPSTPVDPGTPSTPSTPSVPSTPS 120

Query: 121 TPTIPTIPFTCTYWLNHPGLIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRNDG 180
           TPTIPT PFTC YWLNHPGLIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRNDG
Sbjct: 121 TPTIPTTPFTCNYWLNHPGLIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALSNTRNDG 180

Query: 181 YGALLREGTASYLNSLASNRFPYTTKQVRTSFVSALSSNKAAGSQANTFKLANEGKIKPR 240
           YGALLREGTASYLNSLASNRFPYTTKQVRTSFVSALSSNKAAG QANTFKLANEGKIKPR
Sbjct: 181 YGALLREGTASYLNSLASNRFPYTTKQVRTSFVSALSSNKAAGDQANTFKLANEGKIKPR 237

[Close]

BLAST of CsGy6G013370 vs. ExPASy TrEMBL
Match: A0A6J1I3W1 (protodermal factor 1-like OS=Cucurbita maxima OX=3661 GN=LOC111469672 PE=4 SV=1)

HSP 1 Score: 376 bits (966), Expect = 6.51e-130
Identity = 202/251 (80.48%), Postives = 221/251 (88.05%), Query Frame = 0


Query: 1   MRSKQVSALVFTLLAGLLSQSLLIPVLSTSIADQKSYYSPPDPHSGSPPSGSHSSPMPPS 60
           MR+KQ S L+FTLLAGLLSQSLLIPVLST+IADQKSYYSPPDPH+G+PP+GSHS+P+PPS
Sbjct: 1   MRTKQASPLLFTLLAGLLSQSLLIPVLSTTIADQKSYYSPPDPHAGTPPTGSHSNPIPPS 60

Query: 61  HGSGGTP-HYSTPTPSTPSNPPSGGGGYYNPPSSGGSPPSTPVDPGTPSTPSTPSVPSTP 120
           HG GGTP HYSTPTPSTPS  PSG  GYYNPPSSGGS P+TPVDPGTPSTPSTPS PSTP
Sbjct: 61  HGYGGTPPHYSTPTPSTPSKSPSGRSGYYNPPSSGGSTPTTPVDPGTPSTPSTPSTPSTP 120

Query: 121 TTPTIP------------TIPFTCTYWLNHPGLIWGVLGWWGTLGNAFGATNVPGFGTNL 180
           +TP+ P            T PFTC +WLNHPG+IWGVLGWWGTLGN FGATNVPGFGTNL
Sbjct: 121 STPSTPSTPSTPSTPGTPTTPFTCNFWLNHPGMIWGVLGWWGTLGNCFGATNVPGFGTNL 180

Query: 181 NLLQALSNTRNDGYGALLREGTASYLNSLASNRFPYTTKQVRTSFVSALSSNKAAGSQAN 238
           NLLQALSNTR DG+GALLREGTASYLNSLASNRFP+TTKQV++SFVSAL+SN+AA  QAN
Sbjct: 181 NLLQALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSALNSNRAAADQAN 240

[Close]

BLAST of CsGy6G013370 vs. ExPASy TrEMBL
Match: A0A6J1G5M6 (protodermal factor 1-like OS=Cucurbita moschata OX=3662 GN=LOC111451018 PE=4 SV=1)

HSP 1 Score: 374 bits (959), Expect = 6.57e-129
Identity = 201/248 (81.05%), Postives = 221/248 (89.11%), Query Frame = 0


Query: 1   MRSKQVSALVFTLLAGLLSQSLLIPVLSTSIADQKSYYSPPDPHSGSPPSGSHSSPMPPS 60
           MR+KQ S L+FTLLAGLLSQSLLIPVLST+IADQKSYYSPPDPH+G+PP+GSHS+P+PPS
Sbjct: 1   MRTKQASPLLFTLLAGLLSQSLLIPVLSTTIADQKSYYSPPDPHAGTPPTGSHSNPIPPS 60

Query: 61  HGSGGTP-HYSTPTPSTPSNPPSGGGGYYNPPSSGGSPPSTPVDPGTPSTPSTPSVPSTP 120
           HG GGTP HYSTPTPSTP+  PSGG GYYNPPS GGS P+TPVDPGTPSTPSTPS PSTP
Sbjct: 61  HGYGGTPPHYSTPTPSTPTKSPSGGSGYYNPPS-GGSTPTTPVDPGTPSTPSTPSTPSTP 120

Query: 121 TTPTIP---------TIPFTCTYWLNHPGLIWGVLGWWGTLGNAFGATNVPGFGTNLNLL 180
           +TP+ P         T PFTC +WLNHPG+IWGVLGWWGTLGN FGATNVPGFGTNLNLL
Sbjct: 121 STPSTPSTPSTPGTPTTPFTCNFWLNHPGMIWGVLGWWGTLGNCFGATNVPGFGTNLNLL 180

Query: 181 QALSNTRNDGYGALLREGTASYLNSLASNRFPYTTKQVRTSFVSALSSNKAAGSQANTFK 238
           QALSNTR DG+GALLREGTASYLNSLASNRFP+TTKQV++SFVSAL+SN+AA  QAN FK
Sbjct: 181 QALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSALNSNRAAADQANIFK 240

[Close]

BLAST of CsGy6G013370 vs. TAIR 10
Match: AT2G42840.1 (protodermal factor 1 )

HSP 1 Score: 187.6 bits (475), Expect = 1.2e-47
Identity = 142/303 (46.86%), Postives = 170/303 (56.11%), Query Frame = 0


Query: 6   VSALVFTLLAGLLSQSLLIPVLSTSIADQKSYY-SPPDPHSGSPPS-------------- 65
           VS  V+ L A LLSQ L   V S    D K+YY SPP    G+PPS              
Sbjct: 5   VSFAVWALFAALLSQQLFASVASVRFEDAKTYYLSPPSGSHGTPPSHTPPSSNCGSPPYD 64

Query: 66  ---GSHSSPMPPSH---------------------------GSGGTP-------HYSTPT 125
               + S P PPSH                             G  P       H STP+
Sbjct: 65  PSPSTPSHPSPPSHTPTPSTPSHTPTPHTPSHTPTPHTPPCNCGSPPSHPSTPSHPSTPS 124

Query: 126 PSTPSNPPSGGGGYYNPPSSGG----SPPSTPVDPGTP---STPSTPSV-PSTPTTPTIP 185
             TPS+PPS  GGYY+ P        +PPS  VDPGTP    +P TP + P TP TP IP
Sbjct: 125 HPTPSHPPS--GGYYSSPPPRTPVVVTPPSPIVDPGTPIIGGSPPTPIIDPGTPGTPFIP 184

Query: 186 T----IPFTCTYWLNHPGLIWGVLGWWGTLGNAFGA----TNVPGFGTNLNLLQALSNTR 241
                I  TC YW NHP LIWG+LGWWGT+G AFG     +++PGF  ++NLLQALSNTR
Sbjct: 185 APFPPITGTCDYWRNHPTLIWGLLGWWGTVGGAFGTVSIPSSIPGFDPHMNLLQALSNTR 244

The following BLAST results are available for this feature:

BLAST of CsGy6G013370 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S728	1.7e-46	46.86	Protodermal factor 1 OS=Arabidopsis thaliana OX=3702 GN=PDF1 PE=2 SV=1	[more]

BLAST of CsGy6G013370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143175.1	8.52e-162	99.59	protodermal factor 1 [Cucumis sativus] >KGN47037.1 hypothetical protein Csa_0206...	[more]
XP_008456355.1	3.44e-151	94.19	PREDICTED: protodermal factor 1-like [Cucumis melo] >KAA0054578.1 protodermal fa...	[more]
XP_038900371.1	2.50e-141	88.93	protodermal factor 1-like [Benincasa hispida]	[more]
XP_022970795.1	1.34e-129	80.48	protodermal factor 1-like [Cucurbita maxima]	[more]
XP_022947015.1	1.36e-128	81.05	protodermal factor 1-like [Cucurbita moschata]	[more]

BLAST of CsGy6G013370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KF76	4.12e-162	99.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G178950 PE=4 SV=1	[more]
A0A5A7UHX0	1.67e-151	94.19	Protodermal factor 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3C4A9	1.67e-151	94.19	protodermal factor 1-like OS=Cucumis melo OX=3656 GN=LOC103496321 PE=4 SV=1	[more]
A0A6J1I3W1	6.51e-130	80.48	protodermal factor 1-like OS=Cucurbita maxima OX=3661 GN=LOC111469672 PE=4 SV=1	[more]
A0A6J1G5M6	6.57e-129	81.05	protodermal factor 1-like OS=Cucurbita moschata OX=3662 GN=LOC111451018 PE=4 SV=...	[more]

BLAST of CsGy6G013370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42840.1	1.2e-47	46.86	protodermal factor 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..121
None	No IPR available	PANTHER	PTHR33210:SF18	PROTODERMAL FACTOR 1	coord: 1..241
IPR039923	Protodermal factor 1	PANTHER	PTHR33210	PROTODERMAL FACTOR 1	coord: 1..241

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G013370.2	CsGy6G013370.2	mRNA