CsGy6G012545 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy6G012545
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Descriptionprotein BIC2
LocationGy14Chr6: 10902749 .. 10903401 (-)
RNA-Seq ExpressionCsGy6G012545
SyntenyCsGy6G012545
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCTTGGTTGACGTGTACAATAAACCCCCACACAACCCTTCTATTTAACTATTATCTCTCACTCCCAAACATCAAATCTACAAATCGCCATGATCGCTATGGTTCCCCCAAATTCCTCTGATGCCGATGACTCTCCTTCCGTCGGAGCAAGCGCTACGGCTCCTGCTCCATCCCCCGCTGGTGGGTCGACCGGAGATTCTAGCGGCGGTGTTGGGGCTGAGAAATTGAAGGGCTGTTTTGGTGTTCGGGAGCGGCTGAAGAGGCACCGTGAAGAGGTGGCCGGGAAAGTTATGGTGCCGGAGAAATGGGGCAAAGAGGAACTGCTTAAGGATTGGATCGACTATTCGGCGTTCGACAGAATCTTGGCCGCCGGCAGAATAGCGTCGGCGAGGGCGTCGCTAGCGGCGGAGGGACAGCGGAACAGTCGCCGTTCATGGCGTAGGGTGGAAAGCAGGTGTTGAGATTGGGGAAAATCTGTTTTTAATTAACAACTTTGAATTTATATTTTAATGTTATTTATAGAGAGATTAAAACATAAACACACTTCTTATTTGCTTTTTTTTTCTTCCTTTTTAAATATTTTATTTAGTTTAATATTTGTAATAAAACGTTTGAATTATTTGAGTTTCTAATGTCTTGTTCTATAAATTGGC

mRNA sequence

CCCTTGGTTGACGTGTACAATAAACCCCCACACAACCCTTCTATTTAACTATTATCTCTCACTCCCAAACATCAAATCTACAAATCGCCATGATCGCTATGGTTCCCCCAAATTCCTCTGATGCCGATGACTCTCCTTCCGTCGGAGCAAGCGCTACGGCTCCTGCTCCATCCCCCGCTGGTGGGTCGACCGGAGATTCTAGCGGCGGTGTTGGGGCTGAGAAATTGAAGGGCTGTTTTGGTGTTCGGGAGCGGCTGAAGAGGCACCGTGAAGAGGTGGCCGGGAAAGTTATGGTGCCGGAGAAATGGGGCAAAGAGGAACTGCTTAAGGATTGGATCGACTATTCGGCGTTCGACAGAATCTTGGCCGCCGGCAGAATAGCGTCGGCGAGGGCGTCGCTAGCGGCGGAGGGACAGCGGAACAGTCGCCGTTCATGGCGTAGGGTGGAAAGCAGGTGTTGAGATTGGGGAAAATCTGTTTTTAATTAACAACTTTGAATTTATATTTTAATGTTATTTATAGAGAGATTAAAACATAAACACACTTCTTATTTGCTTTTTTTTTCTTCCTTTTTAAATATTTTATTTAGTTTAATATTTGTAATAAAACGTTTGAATTATTTGAGTTTCTAATGTCTTGTTCTATAAATTGGC

Coding sequence (CDS)

ATGATCGCTATGGTTCCCCCAAATTCCTCTGATGCCGATGACTCTCCTTCCGTCGGAGCAAGCGCTACGGCTCCTGCTCCATCCCCCGCTGGTGGGTCGACCGGAGATTCTAGCGGCGGTGTTGGGGCTGAGAAATTGAAGGGCTGTTTTGGTGTTCGGGAGCGGCTGAAGAGGCACCGTGAAGAGGTGGCCGGGAAAGTTATGGTGCCGGAGAAATGGGGCAAAGAGGAACTGCTTAAGGATTGGATCGACTATTCGGCGTTCGACAGAATCTTGGCCGCCGGCAGAATAGCGTCGGCGAGGGCGTCGCTAGCGGCGGAGGGACAGCGGAACAGTCGCCGTTCATGGCGTAGGGTGGAAAGCAGGTGTTGA

Protein sequence

MIAMVPPNSSDADDSPSVGASATAPAPSPAGGSTGDSSGGVGAEKLKGCFGVRERLKRHREEVAGKVMVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQRNSRRSWRRVESRC*
Homology
BLAST of CsGy6G012545 vs. ExPASy Swiss-Prot
Match: Q9M280 (Protein BIC2 OS=Arabidopsis thaliana OX=3702 GN=BIC2 PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.9e-14
Identity = 42/76 (55.26%), Postives = 51/76 (67.11%), Query Frame = 0

Query: 53  RERLKRHREEVAGKVMVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAE----- 112
           R+RLKRHREEVAGKV +P+ WGKE LL  W+D+S FD    + +I SARA+L A+     
Sbjct: 41  RDRLKRHREEVAGKVPIPDSWGKEGLLMGWMDFSTFDAAFTSSQIVSARAALMADSGDDA 100

Query: 113 GQRNSRRSWRRVESRC 124
           G R SR    RVES C
Sbjct: 101 GARGSRPQRLRVESSC 116

BLAST of CsGy6G012545 vs. ExPASy Swiss-Prot
Match: Q9LXJ1 (Protein BIC1 OS=Arabidopsis thaliana OX=3702 GN=BIC1 PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 6.2e-13
Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = 0

Query: 53  RERLKRHREEVAGKVMVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQRNS 112
           RERLK+HR E+AG+V +PE WG+EELLKDWID S FD  L    I+SAR +L  E +R +
Sbjct: 67  RERLKKHRREIAGRVWIPEIWGQEELLKDWIDCSTFDTCLVPAGISSARTALVEEARRAA 126

Query: 113 RRS 116
             S
Sbjct: 127 SAS 129

BLAST of CsGy6G012545 vs. NCBI nr
Match: KGN46948.1 (hypothetical protein Csa_020684 [Cucumis sativus])

HSP 1 Score: 235 bits (599), Expect = 1.07e-77
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0

Query: 1   MIAMVPPNSSDADDSPSVGASATAPAPSPAGGSTGDSSGGVGAEKLKGCFGVRERLKRHR 60
           MIAMVPPNSSDADDSPSVGASATAPAPSPAGGSTGDSSGGVGAEKLKGCFGVRERLKRHR
Sbjct: 1   MIAMVPPNSSDADDSPSVGASATAPAPSPAGGSTGDSSGGVGAEKLKGCFGVRERLKRHR 60

Query: 61  EEVAGKVMVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQRNSRRSWRRVE 120
           EEVAGKVMVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQRNSRRSWRRVE
Sbjct: 61  EEVAGKVMVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQRNSRRSWRRVE 120

Query: 121 SRC 123
           SRC
Sbjct: 121 SRC 123

BLAST of CsGy6G012545 vs. NCBI nr
Match: TYK18920.1 (uncharacterized protein E5676_scaffold28061G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 185 bits (470), Expect = 4.24e-58
Identity = 104/120 (86.67%), Postives = 106/120 (88.33%), Query Frame = 0

Query: 4   MVPPNSSDADDSPSVGASATAPAPSPAGGSTGDSSGGVGAEKLKGCFGVRERLKRHREEV 63
           M+PPNSS   DS SV ASATAPAPSPAG STGDSS  VG EKLKGC GVRERLKRHREEV
Sbjct: 1   MIPPNSSHPHDSLSVVASATAPAPSPAGASTGDSSSTVGPEKLKGCCGVRERLKRHREEV 60

Query: 64  AGKVMVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQRNSRRSWRRVESRC 123
           AGKV VPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQ+N  RS RRVESRC
Sbjct: 61  AGKVTVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQQN--RSRRRVESRC 118

BLAST of CsGy6G012545 vs. NCBI nr
Match: XP_008458586.1 (PREDICTED: uncharacterized protein LOC103497945 [Cucumis melo] >KAA0033406.1 uncharacterized protein E6C27_scaffold111G00580 [Cucumis melo var. makuwa])

HSP 1 Score: 184 bits (467), Expect = 1.22e-57
Identity = 103/120 (85.83%), Postives = 106/120 (88.33%), Query Frame = 0

Query: 4   MVPPNSSDADDSPSVGASATAPAPSPAGGSTGDSSGGVGAEKLKGCFGVRERLKRHREEV 63
           M+PPNSS   DS SV ASATAPAPSPAG STGDSS  VG EKLKGC GVRERLKRHREEV
Sbjct: 1   MIPPNSSHPHDSLSVVASATAPAPSPAGASTGDSSSTVGPEKLKGCCGVRERLKRHREEV 60

Query: 64  AGKVMVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQRNSRRSWRRVESRC 123
           AGKV VP+KWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQ+N  RS RRVESRC
Sbjct: 61  AGKVTVPDKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQQN--RSRRRVESRC 118

BLAST of CsGy6G012545 vs. NCBI nr
Match: KAG7010351.1 (60S ribosomal protein L10a, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 150 bits (378), Expect = 2.35e-41
Identity = 89/119 (74.79%), Postives = 93/119 (78.15%), Query Frame = 0

Query: 4   MVPPNSSDADDSPSVGASATAPAPSPAGGSTGDSSGGVGAEKLKGCFGVRERLKRHREEV 63
           MVPPN SD+ D  S G ++T PA +P  GS GDSSGG  AEK KGC G RERLKRHREEV
Sbjct: 1   MVPPNRSDSGDRLSTGINST-PAAAPVDGSPGDSSGG--AEKFKGCCGFRERLKRHREEV 60

Query: 64  AGKVMVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQRNSRRSWRRVESR 122
           AGKV VPEKWGKEELLKDWIDYSAFDRILAAGRIASARASL AEG        RRVESR
Sbjct: 61  AGKVTVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLVAEG--------RRVESR 108

BLAST of CsGy6G012545 vs. NCBI nr
Match: KAG6570486.1 (Protein HIRA, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 150 bits (380), Expect = 2.47e-39
Identity = 85/107 (79.44%), Postives = 90/107 (84.11%), Query Frame = 0

Query: 4   MVPPNSSDADDSPSVGASATAPAPSPAGGSTGDSSGGVGAEKLKGCFGVRERLKRHREEV 63
           MVPPN SD+ D  S G ++T PA +P  GS GDSSGG  AEKLKGC G RERLKRHREEV
Sbjct: 1   MVPPNRSDSGDRLSTGINST-PAAAPVDGSPGDSSGG--AEKLKGCCGFRERLKRHREEV 60

Query: 64  AGKVMVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQR 110
           AGKV VPEKWGKEELLKDWIDYSAFDRILAAGRIASARASL AEG+R
Sbjct: 61  AGKVTVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLVAEGRR 104

BLAST of CsGy6G012545 vs. ExPASy TrEMBL
Match: A0A0A0KBS7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G152340 PE=4 SV=1)

HSP 1 Score: 235 bits (599), Expect = 5.17e-78
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0

Query: 1   MIAMVPPNSSDADDSPSVGASATAPAPSPAGGSTGDSSGGVGAEKLKGCFGVRERLKRHR 60
           MIAMVPPNSSDADDSPSVGASATAPAPSPAGGSTGDSSGGVGAEKLKGCFGVRERLKRHR
Sbjct: 1   MIAMVPPNSSDADDSPSVGASATAPAPSPAGGSTGDSSGGVGAEKLKGCFGVRERLKRHR 60

Query: 61  EEVAGKVMVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQRNSRRSWRRVE 120
           EEVAGKVMVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQRNSRRSWRRVE
Sbjct: 61  EEVAGKVMVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQRNSRRSWRRVE 120

Query: 121 SRC 123
           SRC
Sbjct: 121 SRC 123

BLAST of CsGy6G012545 vs. ExPASy TrEMBL
Match: A0A5D3D5X1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold28061G00010 PE=4 SV=1)

HSP 1 Score: 185 bits (470), Expect = 2.05e-58
Identity = 104/120 (86.67%), Postives = 106/120 (88.33%), Query Frame = 0

Query: 4   MVPPNSSDADDSPSVGASATAPAPSPAGGSTGDSSGGVGAEKLKGCFGVRERLKRHREEV 63
           M+PPNSS   DS SV ASATAPAPSPAG STGDSS  VG EKLKGC GVRERLKRHREEV
Sbjct: 1   MIPPNSSHPHDSLSVVASATAPAPSPAGASTGDSSSTVGPEKLKGCCGVRERLKRHREEV 60

Query: 64  AGKVMVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQRNSRRSWRRVESRC 123
           AGKV VPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQ+N  RS RRVESRC
Sbjct: 61  AGKVTVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQQN--RSRRRVESRC 118

BLAST of CsGy6G012545 vs. ExPASy TrEMBL
Match: A0A5A7STT7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G00580 PE=4 SV=1)

HSP 1 Score: 184 bits (467), Expect = 5.89e-58
Identity = 103/120 (85.83%), Postives = 106/120 (88.33%), Query Frame = 0

Query: 4   MVPPNSSDADDSPSVGASATAPAPSPAGGSTGDSSGGVGAEKLKGCFGVRERLKRHREEV 63
           M+PPNSS   DS SV ASATAPAPSPAG STGDSS  VG EKLKGC GVRERLKRHREEV
Sbjct: 1   MIPPNSSHPHDSLSVVASATAPAPSPAGASTGDSSSTVGPEKLKGCCGVRERLKRHREEV 60

Query: 64  AGKVMVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQRNSRRSWRRVESRC 123
           AGKV VP+KWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQ+N  RS RRVESRC
Sbjct: 61  AGKVTVPDKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQQN--RSRRRVESRC 118

BLAST of CsGy6G012545 vs. ExPASy TrEMBL
Match: A0A1S3C9F3 (uncharacterized protein LOC103497945 OS=Cucumis melo OX=3656 GN=LOC103497945 PE=4 SV=1)

HSP 1 Score: 184 bits (467), Expect = 5.89e-58
Identity = 103/120 (85.83%), Postives = 106/120 (88.33%), Query Frame = 0

Query: 4   MVPPNSSDADDSPSVGASATAPAPSPAGGSTGDSSGGVGAEKLKGCFGVRERLKRHREEV 63
           M+PPNSS   DS SV ASATAPAPSPAG STGDSS  VG EKLKGC GVRERLKRHREEV
Sbjct: 1   MIPPNSSHPHDSLSVVASATAPAPSPAGASTGDSSSTVGPEKLKGCCGVRERLKRHREEV 60

Query: 64  AGKVMVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQRNSRRSWRRVESRC 123
           AGKV VP+KWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQ+N  RS RRVESRC
Sbjct: 61  AGKVTVPDKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQQN--RSRRRVESRC 118

BLAST of CsGy6G012545 vs. ExPASy TrEMBL
Match: A0A6J1DHR5 (protein BIC2 OS=Momordica charantia OX=3673 GN=LOC111020610 PE=4 SV=1)

HSP 1 Score: 124 bits (311), Expect = 2.30e-34
Identity = 74/101 (73.27%), Postives = 79/101 (78.22%), Query Frame = 0

Query: 29  PAGGSTGDSSGGVGAEKL----KGCFGVRERLKRHREEVAGKVMVPEKWGKEELLKDWID 88
           PA  +  +S  G G EKL    K   GVRERLKRHREEVAGKV VPEKWGKEELLKDWID
Sbjct: 7   PASAAAPESHDGSGVEKLLQPSKSSCGVRERLKRHREEVAGKVTVPEKWGKEELLKDWID 66

Query: 89  YSAFDRILAAGRIASARASLAAEGQR--NSRRSWRRVESRC 123
           YSAFDRILAA RIA+ARASLAAEG+R  NSR + R VESRC
Sbjct: 67  YSAFDRILAAKRIATARASLAAEGRRAANSRPALR-VESRC 106

BLAST of CsGy6G012545 vs. TAIR 10
Match: AT3G44450.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52740.1); Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 80.1 bits (196), Expect = 1.4e-15
Identity = 42/76 (55.26%), Postives = 51/76 (67.11%), Query Frame = 0

Query: 53  RERLKRHREEVAGKVMVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAE----- 112
           R+RLKRHREEVAGKV +P+ WGKE LL  W+D+S FD    + +I SARA+L A+     
Sbjct: 41  RDRLKRHREEVAGKVPIPDSWGKEGLLMGWMDFSTFDAAFTSSQIVSARAALMADSGDDA 100

Query: 113 GQRNSRRSWRRVESRC 124
           G R SR    RVES C
Sbjct: 101 GARGSRPQRLRVESSC 116

BLAST of CsGy6G012545 vs. TAIR 10
Match: AT3G52740.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44450.1); Has 65 Blast hits to 65 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 75.1 bits (183), Expect = 4.4e-14
Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = 0

Query: 53  RERLKRHREEVAGKVMVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQRNS 112
           RERLK+HR E+AG+V +PE WG+EELLKDWID S FD  L    I+SAR +L  E +R +
Sbjct: 67  RERLKKHRREIAGRVWIPEIWGQEELLKDWIDCSTFDTCLVPAGISSARTALVEEARRAA 126

Query: 113 RRS 116
             S
Sbjct: 127 SAS 129

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9M2801.9e-1455.26Protein BIC2 OS=Arabidopsis thaliana OX=3702 GN=BIC2 PE=1 SV=1[more]
Q9LXJ16.2e-1357.14Protein BIC1 OS=Arabidopsis thaliana OX=3702 GN=BIC1 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
KGN46948.11.07e-77100.00hypothetical protein Csa_020684 [Cucumis sativus][more]
TYK18920.14.24e-5886.67uncharacterized protein E5676_scaffold28061G00010 [Cucumis melo var. makuwa][more]
XP_008458586.11.22e-5785.83PREDICTED: uncharacterized protein LOC103497945 [Cucumis melo] >KAA0033406.1 unc... [more]
KAG7010351.12.35e-4174.7960S ribosomal protein L10a, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6570486.12.47e-3979.44Protein HIRA, partial [Cucurbita argyrosperma subsp. sororia][more]
Match NameE-valueIdentityDescription
A0A0A0KBS75.17e-78100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G152340 PE=4 SV=1[more]
A0A5D3D5X12.05e-5886.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7STT75.89e-5885.83Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S3C9F35.89e-5885.83uncharacterized protein LOC103497945 OS=Cucumis melo OX=3656 GN=LOC103497945 PE=... [more]
A0A6J1DHR52.30e-3473.27protein BIC2 OS=Momordica charantia OX=3673 GN=LOC111020610 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G44450.11.4e-1555.26unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G52740.14.4e-1457.14unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 103..123
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..44
NoneNo IPR availablePANTHERPTHR34207:SF12SUBFAMILY NOT NAMEDcoord: 2..123
IPR040374Protein BICPANTHERPTHR34207PROTEIN BIC1coord: 2..123

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy6G012545.1CsGy6G012545.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009785 blue light signaling pathway