CsGy6G011190 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G011190
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	50S ribosomal protein L20
Location	Gy14Chr6: 9609201 .. 9613722 (+)
RNA-Seq Expression	CsGy6G011190
Synteny	CsGy6G011190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAATGGAAATACCTAAATTCCTTCGTCTTTCCCTTACTCTCTCACGTGCTCCGCCTTCTTCTTCCACTTCTTCATTTCACTCCGTCTCCTGTACCCTTTCTACAGCTCAGCCTCGCCGCCGCTTCTCTTCCGTTCAGTTCTACCGCCGCCTCTCTTTCGCCTAAACCTCCATCCTAGCAGGTTTGCGGCAATTTTCTACTCTTTATCTTTCTTCTCACTTGAGAAACTCGAATTAGGACTTTTCAAACTGTCGTGTTATAGCATCTTCCTTTTGATTTATTGCACATATCTTTTTATCTGTTCATCTCTCTTGTCTTTGCTGAAAACTGTCTTGTTTCCTCGACAATTAAACGTCCCAGCATTCCCTTTCTTCTTTATTTATGTACAATCAGGCGAAGTAATATATGGTATCGTCGAATTCTCTTTTAATCCTAGCTCATAGGAGTTATTTTGATTGATTGAACAACCTCGGCCATATTTATAATTGCAGATTATAGTTGTAAAGAAGACAATGAATCATTTTCTGATAATCGAAATGCTCTCCTTCAAATCAACAGACTACCGAAAATTTGCCACTAGTGGTAATTTGAATCTATTAGAAATAAGAGCCGCGGTATACTCTCTGCTCCATGTACTTGATTTAAAAAGTTATAGAAAATGTTTAGGGTAAAATAATCCTATTTTAAAAGGACGAGGGCATAAAGGAGACCTAAAATCTCTCCGCTTATAGCCAATTATATATATAGTATATAGTATATAACATAGGTTATCTTTTTCTATGCCTTCTATTCCTCATAAATGGCGGTGCAGTGTCCAATCGAACGAAAACTTCTCCTGGCATCAAAACTCAACCAAATATCTGAAAGGTCGGAAGTCGTGTTGTTGTTGAGTATATTTGGTTTTTGACTTCACAGTTGTAATGATGTTTTGATTGGATCATCAAATATTCAACTATGATTGATCAATTAATAATTATGATGATTCTGTAGTTTTAGATCATAGCAAGGAAGAAAGATGAACAAGGACAAGATATTTAAGCTAGCCAAGGGTTTTAGAGGCAGGGCCAAGAATTGCATAAGGATTGCCAGAGAGCGAGTGGAGAAGGCTCTCCAATATTCATACAGGGATCGTCGGAACAAGAAGCGGGACATGCGCTCCCTTTGGATACAACGCATCAACGCTGGCACACGCCTTCATGGAGTATGGCTATTTCCTTTGAATCTTCCTTATTAGACTACCACAATTATTTGTGACCACAATACATCATTTTGTCTCTGTAGAATTATTTTTTGTTTTGAATTTCTTAATTTGGTTTAGTTCTTCCTTTTATTTCTTGTTTTATTTTGTTTTCCTGAAAAAATACTCTAAAACGGGGAAAAAAAGAAGACAAATAGGATCAGGGATGGGGAGTGGGATTTCAACTATTTCCTGTGTTTGTTCATAATTTTGATTATAGTGAATAGGATAGAATGTTGAGGAACCTGTGGGGAGGGTTTCATTTTGTTATGTGGGAGTTGATGGTGAAGCTAGTGGAATTGGAGGATTAAAAAAATGAGATCTTGAGATACACGACGAAGTGCCACTAGCTAAGTGGTTATGGTTGTTCTTTATGGAGCATGGTACAAAGTTATAGTGAGCAAAACTGGCCCACAACCTTCTAAGGTGGATGGCAAGAATTGATTCTCAGGGACCTAGTAAAAACTTCGGAAATCTAGTGCACATGGATTCCCGTTTTCCTCTTGCTGTATTAGATGCTTTGTTGGGAAAGATTTGAAAGTTACTTTTGGAAAAAAGGGGAGCCTGAGATTACGTAATGAGGTGCTACTTGCTAGATGGTTGTGGTTATTCTTCATGGAGCATGGTACAAAGTTATTGTGCCAAAGATGGCCCACACCCTTCTAATGTGTGTGGCAGGGATTGATTCTAACTTCTAAGGGACATGGTAAAAACCTTTGAAAATATATTGCTCATGGATTCCCTTTCCTCTCGGTATATTAGATACTTTGTTCGTGAAGATGAAAGTTTATTTTTGAGAAAATTGTTGAGTTTGTGACAATCCTTTTGTGAGTTTGTTTCCTCATTTATATCACTTGTCTCAAAAAAGCATCATTCTCTTTCTGATGCCTTGTCATTTCCTTGGGATTCAATCCTTCTCTTTCTCTTTATGATACAAAGGTTGTTGATTTGGTGGTGGTTCTTCGATTTTTTCCTTCTACAAGACCAGCACAAGTGTTTTTAGGGAGAGAATACTAGGTTGTGGTATCTGACTCTCTTGATCCTTCAAAAGGTTTCTCCGGTAAATCCCAATTTCACATTCTGTTTTTTTTTCTATATGTGAGTGTCTGGGCCAGCTTATGCGCACATCAACTAATCTCACGGGAGAACCCGTCTGACCCTACAACATTTGGGTGTCAAGGAAACCCGTAGGAAATTAATTCCTAGGTAGGTGACCACCATGGATTGAACCCATGACCTCTTAGTTAGATGTTGAGACTATGTCTCCCTTTTTACCCCTAGGCCAACCCATTTTCACATTTTGTTTGTCTCTTCACTAACTTGGGTTGCATAAGTTTTCACTGCTATTTGGTTGAGTTAAATACCAGAGTAGGCTATTTCTTTTGGCAAGTTTTACATGGTAGGGTGAACACTCTAGATTGCTTTCCATGTCATTCTTCCTTTGTATTGCATTTGCAATGGCCCGTCATTTGCATGCAAAGGAGGACCTTCATCTCCGTTTGTGGGGTGTTGATCTAGAATTGGTAGTTGAGCTTGTTTGGCTGACAGCATGGATGGGAGATTGGTTCTCTATGATTGAGGGTGTGGTCTTGTTTTTGCCTAAGGTGGAAAGATCAAATGAGGAAGTGGTATGAAAACCTTAGAAATTTGAAACATTATGAACCCTTTGTTTATTTGAACCCCTAATAACAAATTCTTAAACCCTCAAATTGATTCAATCCAACTACAAGGAGAGTTAAAAAAGGTTACCTTGTGATCAAAGACCATGAGGTAAGGAGAACTACTCCCTTACTCAAGGTTTGAACACTCCATAGGTAAGTTGATCAATCTTACCTGAATGCTCAAGCATGCAACTCTAGATTAAGAATTGCAAAAAAGATGGTGATAAATCTTCCATCATTTGCACCAAGAAAAAATATCATTCCCAAATCTCAAATCCCAAATCCAAAAATTGTTTTGTACATCACAACTTAATGGTTAGGCTCTATAACCTCCCAAACCTTAATGTGTGCCACATCATAAACCCGAGTAAAATGGCAAAAGATACCTTGATTTATTATGTTCTAGAAAGGGTAAAATTGGAAAATAAGAAAATTACTTTAGAAGTATTAAATAAGTATAATTAATGATTTGATGTCTGGATGGTTAATATCAGAAAGTTGGAAGTGTGGGAGGAGGTTACTTTTAATGTCTCCTTGTGGATATTGTTTAATAAGCTTTTTTGTACTTATGACTTTGGTTTGATTTTGCTGTCTCTCACTTTTATGGTTCTTTCTAATATTTCTTTTCCTTTTTGCATGTCTTTGTATTTTATCTTATTTATTTATTTTGAAATGAAGCTCAGTTTCCTACCCCCAAAAGAATTTAGATCATTTTTGGCTTCTGATCTTTTGATATCCTCACATCAATTTTTTAATTTCCACCTTTGATATTCCCACATTCTTTAATTTTAGCTTTCATTTCTTCTACAATTCATCTCTGTAATTTTATGCCAACTTGACCTGCCTGGATAAGCTGCATACGTTTCACATGATTCAAGAATTTTAGCACTTTGAGTTTGAATGGTTTGCTTTTGCGATGGGAGGAGTAAAACCTGCTTTAGGTCAAATAATTACTGTATGATTGTGTTTAATTATTGTTGTAGGATTCTCATTTTCTACATCAGTGTGAAGTGTGAACTGCATCTTATTTCCAATCAACATTGAATTCTTTACCAAGTCACTAAAATATTTACATCAATACATTTGGGCAATTTGCCATGTGGAGAGATACTAACGTTTCTTTTATCTCCTTCCCTACCATTTTAGGTGAATTATGGCAATTTTATGCATGGGCTGATGAAGGAGAACGTTCAACTAAATAGAAAAGTATTGTCAGAGATCTCAATGCACGAACCTTACAGTTTCAAGGCGCTGGTAGACATCTCTCGTAATGCATTTCCTGGAAACAAGAATGTAGTGTTTCCCCCCAAGAAAGATGCTGCTTCCATGATTGTTTAATGGACCGTTTAAGAGTCCTCTGGACCTCCAGTTATATAGGAACCGACTCGGGGTGTTGTCTGGCTTATGATCATCGAGAGTTGATGCTTGTTTTTAGCATAGTTCTTTTTGTTACTATTATTGTATTAATTCTCCTAATCTTGTCAGACACTGAAATGCTTCTCCATTTGAAATGATAAATTTTTTATTGGATGTTTTTTGGGTTTTAGATCCACAACCAAGGACGATATTTTGTTGCCACAAGTTTCTGCAGGATGTCCGGTCAATTTTTGTCATAGGACAGG

mRNA sequence

GAAAAATGGAAATACCTAAATTCCTTCGTCTTTCCCTTACTCTCTCACGTGCTCCGCCTTCTTCTTCCACTTCTTCATTTCACTCCGTCTCCTGTACCCTTTCTACAGCTCAGCCTCGCCGCCGCTTCTCTTCCGTTCAGTTCTACCGCCGCCTCTCTTTCGCCTAAACCTCCATCCTAGCAGTTTTAGATCATAGCAAGGAAGAAAGATGAACAAGGACAAGATATTTAAGCTAGCCAAGGGTTTTAGAGGCAGGGCCAAGAATTGCATAAGGATTGCCAGAGAGCGAGTGGAGAAGGCTCTCCAATATTCATACAGGGATCGTCGGAACAAGAAGCGGGACATGCGCTCCCTTTGGATACAACGCATCAACGCTGGCACACGCCTTCATGGAGTGAATTATGGCAATTTTATGCATGGGCTGATGAAGGAGAACGTTCAACTAAATAGAAAAGTATTGTCAGAGATCTCAATGCACGAACCTTACAGTTTCAAGGCGCTGGTAGACATCTCTCGTAATGCATTTCCTGGAAACAAGAATGTAGTGTTTCCCCCCAAGAAAGATGCTGCTTCCATGATTGTTTAATGGACCGTTTAAGAGTCCTCTGGACCTCCAGTTATATAGGAACCGACTCGGGGTGTTGTCTGGCTTATGATCATCGAGAGTTGATGCTTGTTTTTAGCATAGTTCTTTTTGTTACTATTATTGTATTAATTCTCCTAATCTTGTCAGACACTGAAATGCTTCTCCATTTGAAATGATAAATTTTTTATTGGATGTTTTTTGGGTTTTAGATCCACAACCAAGGACGATATTTTGTTGCCACAAGTTTCTGCAGGATGTCCGGTCAATTTTTGTCATAGGACAGG

Coding sequence (CDS)

ATGAACAAGGACAAGATATTTAAGCTAGCCAAGGGTTTTAGAGGCAGGGCCAAGAATTGCATAAGGATTGCCAGAGAGCGAGTGGAGAAGGCTCTCCAATATTCATACAGGGATCGTCGGAACAAGAAGCGGGACATGCGCTCCCTTTGGATACAACGCATCAACGCTGGCACACGCCTTCATGGAGTGAATTATGGCAATTTTATGCATGGGCTGATGAAGGAGAACGTTCAACTAAATAGAAAAGTATTGTCAGAGATCTCAATGCACGAACCTTACAGTTTCAAGGCGCTGGTAGACATCTCTCGTAATGCATTTCCTGGAAACAAGAATGTAGTGTTTCCCCCCAAGAAAGATGCTGCTTCCATGATTGTTTAA

Protein sequence

MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDAASMIV*

Homology

[Close]

BLAST of CsGy6G011190 vs. ExPASy Swiss-Prot
Match: B6IPJ8 (50S ribosomal protein L20 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=rplT PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 4.7e-32
Identity = 65/101 (64.36%), Postives = 82/101 (81.19%), Query Frame = 0


Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVN 64
           K+ KLAKG+RGR+  C RIA ERVEKAL+Y+YRDRRN+KRD R LWIQRINAG RLHG+ 
Sbjct: 16  KVLKLAKGYRGRSSKCYRIALERVEKALRYAYRDRRNRKRDFRGLWIQRINAGARLHGLT 75

Query: 65  YGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNA 106
           Y  FMHGL +  ++++RKVLS+I+  EP SFKALV+ ++ A
Sbjct: 76  YSKFMHGLKRAGIEVDRKVLSDIAAREPESFKALVEQAQKA 116

[Close]

BLAST of CsGy6G011190 vs. ExPASy Swiss-Prot
Match: Q3YSX0 (50S ribosomal protein L20 OS=Ehrlichia canis (strain Jake) OX=269484 GN=rplT PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.8e-29
Identity = 61/101 (60.40%), Postives = 81/101 (80.20%), Query Frame = 0


Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVN 64
           K+ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRRN+KR  RSLWI RINA  R HG+ 
Sbjct: 16  KVIKLAKGYRGRSKNCYRIALQRVEKALQYAYRDRRNRKRFFRSLWIMRINAAARQHGLL 75

Query: 65  YGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNA 106
           Y +F+HGL   N+ LNRKVL++++++   +FK +VDI++ A
Sbjct: 76  YSDFIHGLSLANITLNRKVLADMAVNNQDNFKQIVDITKEA 116

[Close]

BLAST of CsGy6G011190 vs. ExPASy Swiss-Prot
Match: Q2GHR2 (50S ribosomal protein L20 OS=Ehrlichia chaffeensis (strain ATCC CRL-10679 / Arkansas) OX=205920 GN=rplT PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-28
Identity = 61/101 (60.40%), Postives = 79/101 (78.22%), Query Frame = 0


Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVN 64
           K+ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRRN+KR  RSLWI RINA  R HG+ 
Sbjct: 16  KVIKLAKGYRGRSKNCYRIALQRVEKALQYAYRDRRNRKRFFRSLWIMRINAAVRQHGLL 75

Query: 65  YGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNA 106
           Y +F+HGL   NV LNRKVL++++++    FK +VD+ + A
Sbjct: 76  YSDFIHGLSLANVTLNRKVLADMAVNHKDHFKQIVDLIKEA 116

[Close]

BLAST of CsGy6G011190 vs. ExPASy Swiss-Prot
Match: Q11KK1 (50S ribosomal protein L20 OS=Chelativorans sp. (strain BNC1) OX=266779 GN=rplT PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.4e-28
Identity = 60/107 (56.07%), Postives = 83/107 (77.57%), Query Frame = 0


Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVN 64
           K+ K AKGF GR KN IRIA++ VEK+LQY+YRDR+N+KR+ R+LWIQRINA TR HG+ 
Sbjct: 16  KVLKAAKGFYGRRKNTIRIAKQAVEKSLQYAYRDRKNRKRNFRALWIQRINAATREHGLT 75

Query: 65  YGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKN 112
           YG F+ GL K  ++++RKVL+++++HEP +F ALV  S+ +    KN
Sbjct: 76  YGRFIDGLNKAGIEIDRKVLADMAVHEPQAFAALVAKSKASLEYLKN 122

[Close]

BLAST of CsGy6G011190 vs. ExPASy Swiss-Prot
Match: Q5FH69 (50S ribosomal protein L20 OS=Ehrlichia ruminantium (strain Gardel) OX=302409 GN=rplT PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.1e-28
Identity = 57/101 (56.44%), Postives = 81/101 (80.20%), Query Frame = 0


Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVN 64
           K+ KLAKG+RGR+KNC R+A +RVEKALQY+YRDRRN+KR  RSLWI RINA  R +G+ 
Sbjct: 16  KVIKLAKGYRGRSKNCYRVALQRVEKALQYAYRDRRNRKRFFRSLWIMRINAAVRQYGLL 75

Query: 65  YGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNA 106
           Y +F++GL   N+ LNRK+L+++++H   +FK +VD+++ A
Sbjct: 76  YSDFIYGLSLANITLNRKILADMAVHNKDNFKQIVDLTKEA 116

[Close]

BLAST of CsGy6G011190 vs. NCBI nr
Match: XP_004139908.1 (uncharacterized protein LOC101216644 [Cucumis sativus] >XP_031744108.1 uncharacterized protein LOC101216644 [Cucumis sativus] >XP_031744109.1 uncharacterized protein LOC101216644 [Cucumis sativus] >XP_031744110.1 uncharacterized protein LOC101216644 [Cucumis sativus] >KGN46794.1 hypothetical protein Csa_020818 [Cucumis sativus])

HSP 1 Score: 249 bits (636), Expect = 2.81e-83
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

Query: 121 ASMIV 125
           ASMIV
Sbjct: 121 ASMIV 125

[Close]

BLAST of CsGy6G011190 vs. NCBI nr
Match: XP_008456292.1 (PREDICTED: 50S ribosomal protein L20 [Cucumis melo] >XP_008456294.1 PREDICTED: 50S ribosomal protein L20 [Cucumis melo] >XP_008456295.1 PREDICTED: 50S ribosomal protein L20 [Cucumis melo] >XP_016901960.1 PREDICTED: 50S ribosomal protein L20 [Cucumis melo] >XP_016901961.1 PREDICTED: 50S ribosomal protein L20 [Cucumis melo])

HSP 1 Score: 248 bits (634), Expect = 5.68e-83
Identity = 124/125 (99.20%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKENVQLNRKVLSE+SMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

Query: 121 ASMIV 125
           ASMIV
Sbjct: 121 ASMIV 125

[Close]

BLAST of CsGy6G011190 vs. NCBI nr
Match: XP_022943497.1 (uncharacterized protein LOC111448251 [Cucurbita moschata] >XP_022943498.1 uncharacterized protein LOC111448251 [Cucurbita moschata] >XP_022943499.1 uncharacterized protein LOC111448251 [Cucurbita moschata] >KAG6570598.1 hypothetical protein SDJN03_29513, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010448.1 rplT [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 247 bits (630), Expect = 2.31e-82
Identity = 123/125 (98.40%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKENVQLNRKVLSE+SMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

Query: 121 ASMIV 125
            SMIV
Sbjct: 121 VSMIV 125

[Close]

BLAST of CsGy6G011190 vs. NCBI nr
Match: XP_022985864.1 (uncharacterized protein LOC111483787 [Cucurbita maxima] >XP_022985865.1 uncharacterized protein LOC111483787 [Cucurbita maxima] >XP_022985866.1 uncharacterized protein LOC111483787 [Cucurbita maxima])

HSP 1 Score: 246 bits (629), Expect = 3.29e-82
Identity = 122/125 (97.60%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKENVQLNRKVLSE+SMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

Query: 121 ASMIV 125
            SM+V
Sbjct: 121 VSMVV 125

[Close]

BLAST of CsGy6G011190 vs. NCBI nr
Match: XP_038901625.1 (50S ribosomal protein L20 [Benincasa hispida] >XP_038901626.1 50S ribosomal protein L20 [Benincasa hispida])

HSP 1 Score: 246 bits (627), Expect = 6.64e-82
Identity = 122/125 (97.60%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKG+RGRAKNCIRIARERVEK LQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGYRGRAKNCIRIARERVEKGLQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKENVQLNRKVLSE+SMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

Query: 121 ASMIV 125
           ASMIV
Sbjct: 121 ASMIV 125

[Close]

BLAST of CsGy6G011190 vs. ExPASy TrEMBL
Match: A0A0A0KD68 (50S ribosomal protein L20 OS=Cucumis sativus OX=3659 GN=Csa_6G135990 PE=3 SV=1)

HSP 1 Score: 249 bits (636), Expect = 1.36e-83
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

Query: 121 ASMIV 125
           ASMIV
Sbjct: 121 ASMIV 125

[Close]

BLAST of CsGy6G011190 vs. ExPASy TrEMBL
Match: A0A1S4E159 (50S ribosomal protein L20 OS=Cucumis melo OX=3656 GN=LOC103496283 PE=3 SV=1)

HSP 1 Score: 248 bits (634), Expect = 2.75e-83
Identity = 124/125 (99.20%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKENVQLNRKVLSE+SMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

Query: 121 ASMIV 125
           ASMIV
Sbjct: 121 ASMIV 125

[Close]

BLAST of CsGy6G011190 vs. ExPASy TrEMBL
Match: A0A6J1FUI3 (50S ribosomal protein L20 OS=Cucurbita moschata OX=3662 GN=LOC111448251 PE=3 SV=1)

HSP 1 Score: 247 bits (630), Expect = 1.12e-82
Identity = 123/125 (98.40%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKENVQLNRKVLSE+SMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

Query: 121 ASMIV 125
            SMIV
Sbjct: 121 VSMIV 125

[Close]

BLAST of CsGy6G011190 vs. ExPASy TrEMBL
Match: A0A6J1JCG1 (50S ribosomal protein L20 OS=Cucurbita maxima OX=3661 GN=LOC111483787 PE=3 SV=1)

HSP 1 Score: 246 bits (629), Expect = 1.59e-82
Identity = 122/125 (97.60%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKENVQLNRKVLSE+SMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

Query: 121 ASMIV 125
            SM+V
Sbjct: 121 VSMVV 125

[Close]

BLAST of CsGy6G011190 vs. ExPASy TrEMBL
Match: A0A6J1D684 (50S ribosomal protein L20 OS=Momordica charantia OX=3673 GN=LOC111018005 PE=3 SV=1)

HSP 1 Score: 241 bits (616), Expect = 1.53e-80
Identity = 120/125 (96.00%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVV PPKKD 
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVLPPKKDG 120

Query: 121 ASMIV 125
            S++V
Sbjct: 121 ISIVV 125

[Close]

BLAST of CsGy6G011190 vs. TAIR 10
Match: AT1G16740.1 (Ribosomal protein L20 )

HSP 1 Score: 211.8 bits (538), Expect = 3.1e-55
Identity = 103/124 (83.06%), Postives = 113/124 (91.13%), Query Frame = 0


Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNK +IFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKR+MR LWI+RINAG+R 
Sbjct: 1   MNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKREMRGLWIERINAGSRQ 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNF+HGLMKEN+QLNRKVLSE+SMHEPYSFKALVD+SR +FPGNKNVV   +K  
Sbjct: 61  HGVNYGNFIHGLMKENIQLNRKVLSELSMHEPYSFKALVDVSRKSFPGNKNVVQASRKVD 120

Query: 121 ASMI 125
            S I
Sbjct: 121 ISSI 124

[Close]

BLAST of CsGy6G011190 vs. TAIR 10
Match: ATCG00660.1 (ribosomal protein L20 )

HSP 1 Score: 61.6 bits (148), Expect = 5.2e-10
Identity = 35/89 (39.33%), Postives = 52/89 (58.43%), Query Frame = 0


Query: 3   KDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHG 62
           + K+   A  FRG      R   ++  +AL  ++RDR  +KRD R LWI RINA     G
Sbjct: 14  RTKLRLFASSFRGAHSRLTRTMTQQRIRALVSAHRDRGKRKRDFRRLWITRINAVIHEMG 73

Query: 63  V--NYGNFMHGLMKENVQLNRKVLSEISM 90
           V  +Y  F+H L K+ + LNRK+L++I++
Sbjct: 74  VFYSYNEFIHNLYKKQLLLNRKILAQIAL 102

The following BLAST results are available for this feature:

BLAST of CsGy6G011190 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B6IPJ8	4.7e-32	64.36	50S ribosomal protein L20 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX...	[more]
Q3YSX0	2.8e-29	60.40	50S ribosomal protein L20 OS=Ehrlichia canis (strain Jake) OX=269484 GN=rplT PE=...	[more]
Q2GHR2	1.4e-28	60.40	50S ribosomal protein L20 OS=Ehrlichia chaffeensis (strain ATCC CRL-10679 / Arka...	[more]
Q11KK1	2.4e-28	56.07	50S ribosomal protein L20 OS=Chelativorans sp. (strain BNC1) OX=266779 GN=rplT P...	[more]
Q5FH69	3.1e-28	56.44	50S ribosomal protein L20 OS=Ehrlichia ruminantium (strain Gardel) OX=302409 GN=...	[more]

BLAST of CsGy6G011190 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139908.1	2.81e-83	100.00	uncharacterized protein LOC101216644 [Cucumis sativus] >XP_031744108.1 uncharact...	[more]
XP_008456292.1	5.68e-83	99.20	PREDICTED: 50S ribosomal protein L20 [Cucumis melo] >XP_008456294.1 PREDICTED: 5...	[more]
XP_022943497.1	2.31e-82	98.40	uncharacterized protein LOC111448251 [Cucurbita moschata] >XP_022943498.1 unchar...	[more]
XP_022985864.1	3.29e-82	97.60	uncharacterized protein LOC111483787 [Cucurbita maxima] >XP_022985865.1 uncharac...	[more]
XP_038901625.1	6.64e-82	97.60	50S ribosomal protein L20 [Benincasa hispida] >XP_038901626.1 50S ribosomal prot...	[more]

BLAST of CsGy6G011190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KD68	1.36e-83	100.00	50S ribosomal protein L20 OS=Cucumis sativus OX=3659 GN=Csa_6G135990 PE=3 SV=1	[more]
A0A1S4E159	2.75e-83	99.20	50S ribosomal protein L20 OS=Cucumis melo OX=3656 GN=LOC103496283 PE=3 SV=1	[more]
A0A6J1FUI3	1.12e-82	98.40	50S ribosomal protein L20 OS=Cucurbita moschata OX=3662 GN=LOC111448251 PE=3 SV=...	[more]
A0A6J1JCG1	1.59e-82	97.60	50S ribosomal protein L20 OS=Cucurbita maxima OX=3661 GN=LOC111483787 PE=3 SV=1	[more]
A0A6J1D684	1.53e-80	96.00	50S ribosomal protein L20 OS=Momordica charantia OX=3673 GN=LOC111018005 PE=3 SV...	[more]

BLAST of CsGy6G011190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G16740.1	3.1e-55	83.06	Ribosomal protein L20	[more]
ATCG00660.1	5.2e-10	39.33	ribosomal protein L20	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005813	Ribosomal protein L20	PRINTS	PR00062	RIBOSOMALL20	coord: 64..90 score: 38.05 coord: 1..30 score: 33.03 coord: 31..60 score: 58.08
IPR005813	Ribosomal protein L20	PFAM	PF00453	Ribosomal_L20	coord: 3..98 e-value: 3.7E-41 score: 139.6
IPR005813	Ribosomal protein L20	TIGRFAM	TIGR01032	TIGR01032	coord: 3..102 e-value: 1.5E-38 score: 129.5
IPR005813	Ribosomal protein L20	PANTHER	PTHR10986	39S RIBOSOMAL PROTEIN L20	coord: 1..113
IPR005813	Ribosomal protein L20	PROSITE	PS00937	RIBOSOMAL_L20	coord: 43..59
IPR005813	Ribosomal protein L20	HAMAP	MF_00382	Ribosomal_L20	coord: 1..104 score: 22.209963
IPR005813	Ribosomal protein L20	CDD	cd07026	Ribosomal_L20	coord: 5..100 e-value: 1.45457E-49 score: 151.483
IPR035566	Ribosomal protein L20, C-terminal	GENE3D	1.10.1900.20	Ribosomal protein L20	coord: 45..106 e-value: 1.7E-26 score: 93.5
IPR035566	Ribosomal protein L20, C-terminal	SUPERFAMILY	74731	Ribosomal protein L20	coord: 2..105
None	No IPR available	GENE3D	6.10.160.10		coord: 1..44 e-value: 3.7E-20 score: 73.8
None	No IPR available	PANTHER	PTHR10986:SF24	50S RIBOSOMAL PROTEIN L20	coord: 1..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G011190.1	CsGy6G011190.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000027	ribosomal large subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome