CsGy6G010600 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G010600
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	E3 ubiquitin-protein ligase RMA1H1
Location	Gy14Chr6: 9083202 .. 9086202 (-)
RNA-Seq Expression	CsGy6G010600
Synteny	CsGy6G010600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGAGTAGAAAAAAAGGAAAGGGAGGAAAAGGAAAGGCGATTGAAGAGAAACCAGAGCTTTAAAAGAGAGCAATGTTTTTGTCCTTTACTTCTTTGCTTTAAGCTCAGACGCCGCATCGTCATCGTCCCATCGTCTCTTCTATATCCATTCTTTTTCCCATTTCTATTGAATTTCAGATTCCTTCGCTCTTCTCGCTTTTTATATAAACTCCCTCTCAACCCTCCACCCTCCACATCGCCCTCTTCAAATTCATATTCCTTCTTCTTCCTCCTCCTCTCTCAACCAACCTTTTTAACTCTCACGCAGATACTAATCCGCCGATTAAATTTTGGTACGTTTCTGTTCCCCCCTTCTGTATGACTCTTAGATGGGACTGTGTTTCTCAGTGGATTAAGCTTTAGATCTGTTTGCCAATGTATATGGGTATTTTTTTTCGTTTAGGTTTCTTCCTTTCGAGACCTCTGATGGAGATGGGGTTCTTTGTTTTTGGTTTTTGAGTTTTTTTTTTTTTTTTTTTTTTTTGATATCGCTTCGAACTCCATCCCCTTTTTTTGTGGATGACTTTTGGGTTTCTTTGTTTTCTGAAACGGTTTTATGTGTTGTGCAGGCGGAAAACTTTCATGCTCTGTTTTTGCTCTGTTTTTTAGAGATGTTTTATGTGGTGTGAGGGTGGGGGTGGATTCTTTCGATTGTTTTATTTTTTCCAAAGATTAATACGCCAATAGAACTTTAGTCAAGTGGTGAGTTACGAAAATCTTGTGTTCTTGTTGGGTCTTTTGAATAGAAAGTTCACTTGGATTTTCCACCTCTTTGGAAAATGGAAGAGTAGTTATGTGGAGTTCTGATTTCGATTGCAACTTGGGTTTTGATTCACCTGTATATTGTTTTTGGTTATTAATTGTTGGGTTTGTGATTTTTCTTCATTTAGGAAAATTCTTAGTTATGTATTTATGCCGTTCTGGTTTCTTCTATGCATGATTATGCCTCTCGGATCTGTTTTTCAAGTAACTGATCGAATTTATGTGTGTGCCTAAAGATTGATAGTTCTTTTCACTTTTCACCTGCACTGAGTTCATCTGCTTCAAAAGATGGCTTATGAATGCAGAAGATTCTGAATCTTTACCACGTTATGCAAGAAATTGGAACTTCTAACAATTTTATTAGGATAACGTAATCTAGGGAAGTTCTTGGATGGATTGTGTCTGTGAGAGTCATAACGAATCTCCATCATTTGAATTTCTTATTGATTAAATAAATTGAATCTGGGTCTGTCAAGATCAGCATGTTTTGATATTTATGGGAACTTCAGAAATCCTTGACACCATTCTCCACTTGGGGGTTTCGTGATAGAATTTTCAAGAGGCGACCATTCAGAATAGAATAATCTATAAGCTTACCCATGTTCGTGTCAGTTCTGGGACCCAATTAATATTATATTCGAAGCAGTGGATTAGGATGATTTGTTTTGCCGTTTCATCAGTTATCTTATCACTGCAATGAATGGGATGCTTTTGGTTTATTAATGAATTCCTAGTAAATCGTGCCTTTATAGCTTCTTGTCCGAATTGTTGATTCTTTTGTCTGCTTTTTTGCATCCTTGTATTTACAAACAGCAGCCTTTTACTGTGAATTTCTATTAGACTTTAGTTCTGAGTTCTGACCTTGTTTCTTGGATATGTTTATCAGCTTGAGGCATTATAGAAAGTAGACTGTGCTGAAACATAAACCTGGCCATGGAACAGGAGTACCTTGAAGAGACTTTGATGCAAAACGACAATTCATTAGGAGGAGACAAATTATGTTTAGACAACCAAATATATATTTCAGATGCTGAAGATGAAGCTTCCCATGGCTTTGACTGCAACATATGCCTAGACTCGGTTCAAGATCCTGTTGTAACCCTTTGTGGTCATCTCTTCTGTTGGCCCTGCATTTATAAATGGCTTCACTGCAAGAAATTATCTGCACAACGATGCCAACAAGTGGAATGCCGATGTCCTGTTTGCAAGGCCAAAGTCTCCCGTGCTACTCTCGTCCCAATCTACGGAAAATTTCAAACTACAGATGCCTCAAAAGCTGAAGCACCTCCAAATCTTGGCCCAGCCATCCCACGCAGGCCGCTCGGGCGGCATGCTTGTGAGGCAGAGACACCAGCATCTCCAACCACCCAACTTCATTCCGACAACTATTCTCCTCAGTCACACTCGTACTACGCACAAACACAAAACGAATACATCGCTTCGTCAATGCTTAGCTCAAGCAGTATCACAACAAACATTATCCATCCAGTGATCGGAATGTTTGGTGACACGATTTACGCAAGAACGTTTGGAAACACAACAACGAACCTGTACACTTATCCAAATTCATATGGTAATGTGAGCAACAGTAGTGTAAGACTGAGGAGGCACATAATGCAGGCTGATGAGTCACTGAGCAGAATCTGTTTTTTCTTTTTTTGCTGCTTAGTAATATGTCTTCTTTTATTCTAAGAAGCTCCCTTTAGACCATTTCTAGGCATTGGATGTAGATATATACACATAGCATGTAACTATGAGCTTAGTGTAAAAAAGGGCTACAAAATTTCCTTCAATCTGTTTCAAGGAATTGGTGGATGTATAATGAAAATTATTTTATGTGGGAATCCCATTATCACAAAAAGTTAATTAGATGAGCAATAACGTAGGAATCTCCTAATAAGTGATCCACGAAAAGGAATGAAGATAGGGAAAGTTTGCATAATCTTTTTCTTTTCTTTATTTGTCTGGTTGATTAAAAAAATTACTAAAATCCAATTTTGTGGTTATCCAAACTTGATTCATTTCAATATAAAATTAGGTGAATGGAAGAGGGCATCTTCATGCACCCAAACAAGTCTTTCTCCAAAGGAACAAATTTCTTCCGTGAATGGCACGACTTCAATAAATAAGCAACCCGTAATGTTTGCATTAGTACTTGAATAGATCGAACTGACTCGAATCCAAGTGAGCCTATTTGTTT

mRNA sequence

ACGAGTAGAAAAAAAGGAAAGGGAGGAAAAGGAAAGGCGATTGAAGAGAAACCAGAGCTTTAAAAGAGAGCAATGTTTTTGTCCTTTACTTCTTTGCTTTAAGCTCAGACGCCGCATCGTCATCGTCCCATCGTCTCTTCTATATCCATTCTTTTTCCCATTTCTATTGAATTTCAGATTCCTTCGCTCTTCTCGCTTTTTATATAAACTCCCTCTCAACCCTCCACCCTCCACATCGCCCTCTTCAAATTCATATTCCTTCTTCTTCCTCCTCCTCTCTCAACCAACCTTTTTAACTCTCACGCAGATACTAATCCGCCGATTAAATTTTGGCGGAAAACTTTCATGCTCTGTTTTTGCTCTGTTTTTTAGAGATGTTTTATGTGGTGTGAGGGTGGGGGTGGATTCTTTCGATTGTTTTATTTTTTCCAAAGATTAATACGCCAATAGAACTTTAGTCAAGTGCTTGAGGCATTATAGAAAGTAGACTGTGCTGAAACATAAACCTGGCCATGGAACAGGAGTACCTTGAAGAGACTTTGATGCAAAACGACAATTCATTAGGAGGAGACAAATTATGTTTAGACAACCAAATATATATTTCAGATGCTGAAGATGAAGCTTCCCATGGCTTTGACTGCAACATATGCCTAGACTCGGTTCAAGATCCTGTTGTAACCCTTTGTGGTCATCTCTTCTGTTGGCCCTGCATTTATAAATGGCTTCACTGCAAGAAATTATCTGCACAACGATGCCAACAAGTGGAATGCCGATGTCCTGTTTGCAAGGCCAAAGTCTCCCGTGCTACTCTCGTCCCAATCTACGGAAAATTTCAAACTACAGATGCCTCAAAAGCTGAAGCACCTCCAAATCTTGGCCCAGCCATCCCACGCAGGCCGCTCGGGCGGCATGCTTGTGAGGCAGAGACACCAGCATCTCCAACCACCCAACTTCATTCCGACAACTATTCTCCTCAGTCACACTCGTACTACGCACAAACACAAAACGAATACATCGCTTCGTCAATGCTTAGCTCAAGCAGTATCACAACAAACATTATCCATCCAGTGATCGGAATGTTTGGTGACACGATTTACGCAAGAACGTTTGGAAACACAACAACGAACCTGTACACTTATCCAAATTCATATGGTAATGTGAGCAACAGTAGTGTAAGACTGAGGAGGCACATAATGCAGGCTGATGAGTCACTGAGCAGAATCTGTTTTTTCTTTTTTTGCTGCTTAGTAATATGTCTTCTTTTATTCTAAGAAGCTCCCTTTAGACCATTTCTAGGCATTGGATGTAGATATATACACATAGCATGTAACTATGAGCTTAGTGTAAAAAAGGGCTACAAAATTTCCTTCAATCTGTTTCAAGGAATTGGTGGATGTATAATGAAAATTATTTTATGTGGGAATCCCATTATCACAAAAAGTTAATTAGATGAGCAATAACGTAGGAATCTCCTAATAAGTGATCCACGAAAAGGAATGAAGATAGGGAAAGTTTGCATAATCTTTTTCTTTTCTTTATTTGTCTGGTTGATTAAAAAAATTACTAAAATCCAATTTTGTGGTTATCCAAACTTGATTCATTTCAATATAAAATTAGGTGAATGGAAGAGGGCATCTTCATGCACCCAAACAAGTCTTTCTCCAAAGGAACAAATTTCTTCCGTGAATGGCACGACTTCAATAAATAAGCAACCCGTAATGTTTGCATTAGTACTTGAATAGATCGAACTGACTCGAATCCAAGTGAGCCTATTTGTTT

Coding sequence (CDS)

ATGGAACAGGAGTACCTTGAAGAGACTTTGATGCAAAACGACAATTCATTAGGAGGAGACAAATTATGTTTAGACAACCAAATATATATTTCAGATGCTGAAGATGAAGCTTCCCATGGCTTTGACTGCAACATATGCCTAGACTCGGTTCAAGATCCTGTTGTAACCCTTTGTGGTCATCTCTTCTGTTGGCCCTGCATTTATAAATGGCTTCACTGCAAGAAATTATCTGCACAACGATGCCAACAAGTGGAATGCCGATGTCCTGTTTGCAAGGCCAAAGTCTCCCGTGCTACTCTCGTCCCAATCTACGGAAAATTTCAAACTACAGATGCCTCAAAAGCTGAAGCACCTCCAAATCTTGGCCCAGCCATCCCACGCAGGCCGCTCGGGCGGCATGCTTGTGAGGCAGAGACACCAGCATCTCCAACCACCCAACTTCATTCCGACAACTATTCTCCTCAGTCACACTCGTACTACGCACAAACACAAAACGAATACATCGCTTCGTCAATGCTTAGCTCAAGCAGTATCACAACAAACATTATCCATCCAGTGATCGGAATGTTTGGTGACACGATTTACGCAAGAACGTTTGGAAACACAACAACGAACCTGTACACTTATCCAAATTCATATGGTAATGTGAGCAACAGTAGTGTAAGACTGAGGAGGCACATAATGCAGGCTGATGAGTCACTGAGCAGAATCTGTTTTTTCTTTTTTTGCTGCTTAGTAATATGTCTTCTTTTATTCTAA

Protein sequence

MEQEYLEETLMQNDNSLGGDKLCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHCKKLSAQRCQQVECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPPNLGPAIPRRPLGRHACEAETPASPTTQLHSDNYSPQSHSYYAQTQNEYIASSMLSSSSITTNIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVSNSSVRLRRHIMQADESLSRICFFFFCCLVICLLLF*

Homology

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BLAST of CsGy6G010600 vs. ExPASy Swiss-Prot
Match: Q6R567 (E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 6.0e-55
Identity = 119/257 (46.30%), Postives = 159/257 (61.87%), Query Frame = 0


Query: 1   MEQEYLEETLMQNDNSLGGDKLCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLCGH 60
           M  E L+ T  ++D  LG  K   D      + E+  S GFDCNICLD V +PV+TLCGH
Sbjct: 5   MALEQLDTTFNKHDTPLGKWKSMND------EVEENISGGFDCNICLDCVHEPVITLCGH 64

Query: 61  LFCWPCIYKWLHCKKLSAQRCQQVECRCPVCKAKVSRATLVPIYGK-FQTTDASKAEAPP 120
           L+CWPCIYKW++ + +S++   Q + +CPVCKA+VS  TL+P+YG+  Q+T  S+ +A P
Sbjct: 65  LYCWPCIYKWIYFQSVSSENSDQQQPQCPVCKAEVSEKTLIPLYGRGGQSTKPSEGKA-P 124

Query: 121 NLGPAIPRRP----LGRHACEAETPASPTTQLHSDNYSPQSHSYYAQTQNEYIASSMLSS 180
           NLG  IP+RP     G H     T ++P+  L    Y  QS +     Q  Y++S MLS 
Sbjct: 125 NLGIVIPQRPPSPRCGGHFLLPTTDSNPSQLLQRRGYQQQSQTRQPAYQGSYMSSPMLSP 184

Query: 181 SSITTNIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVSNSSVRLRRHIMQADESLS 240
              T N++     M G+  YAR FGN++T +YTYPNSY    +SS R+RR + QAD SL 
Sbjct: 185 GGATANMLQH--SMIGEVAYARIFGNSSTTMYTYPNSYNLAISSSPRMRRQLSQADRSLG 244

Query: 241 RICFFFFCCLVICLLLF 253
           RICFF FCC V CL+LF
Sbjct: 245 RICFFLFCCFVTCLILF 252

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BLAST of CsGy6G010600 vs. ExPASy Swiss-Prot
Match: O64425 (E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 2.6e-42
Identity = 96/221 (43.44%), Postives = 136/221 (61.54%), Query Frame = 0


Query: 33  AEDEASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHCKKLSAQRCQQVECRCPVCK 92
           ++D     FDCNICLDSVQ+PVVTLCGHLFCWPCI+KWL  +  S     Q   +CPVCK
Sbjct: 38  SDDTDDSNFDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCK 97

Query: 93  AKVSRATLVPIYGKFQTTDASKAEAPPNLGPAIPRRPLGRHACEAETPASPTTQLHSDNY 152
           +KVS +TLVP+YG+ + T   + +       ++P+RP+G      E P SP     +D  
Sbjct: 98  SKVSHSTLVPLYGRGRCTTQEEGK------NSVPKRPVG-PVYRLEMPNSPYAS--TDLR 157

Query: 153 SPQSHSYYAQTQNEYIASSMLSSSSIT-TNIIHPVIGMFGDTIYARTFGNTTTNLYTYPN 212
             Q   + +  +  Y  S ++SS+S++ + ++ PV+ M G+ +  R FG    + + YP+
Sbjct: 158 LSQRVHFNSPQEGYYPVSGVMSSNSLSYSAVLDPVMVMVGEMVATRLFGTRVMDRFAYPD 217

Query: 213 SYGNVSNSSVRLRRHIMQADESLSRICFFFFCCLVICLLLF 253
           +Y     S  R+RR IMQAD+SL RI FFF CC+V+CLLLF
Sbjct: 218 TYNLAGTSGPRMRRRIMQADKSLGRIFFFFMCCVVLCLLLF 249

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BLAST of CsGy6G010600 vs. ExPASy Swiss-Prot
Match: Q8GUK7 (E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 5.3e-35
Identity = 87/215 (40.47%), Postives = 122/215 (56.74%), Query Frame = 0


Query: 41  FDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHCKKLSAQRCQQVECRCPVCKAKVSRATL 100
           FDCNICLD+  DPVVTLCGHLFCWPCIYKWLH  +LS+    Q +  CPVCK+ ++  +L
Sbjct: 42  FDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHV-QLSSVSVDQHQNNCPVCKSNITITSL 101

Query: 101 VPIYGKFQTTDASK--AEAPPNLGPAIPRRPLGRHACEAETPASP-TTQLHSDNYSPQSH 160
           VP+YG+  ++ +S   ++    L   IPRRP         T AS     L     SP  H
Sbjct: 102 VPLYGRGMSSPSSTFGSKKQDALSTDIPRRPAPSALRNPITSASSLNPSLQHQTLSPSFH 161

Query: 161 SYYAQTQNEYIASSMLSSSSITTNIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVS 220
           ++    +      S   ++++  + ++PVIGMFGD +Y R FG T TN    P       
Sbjct: 162 NHQYSPRGFTTTESTDLANAVMMSFLYPVIGMFGDLVYTRIFG-TFTNTIAQPYQ----- 221

Query: 221 NSSVRLRRHIMQADESLSRICFFFFCCLVICLLLF 253
                  + +MQ ++SL+R+  FF CC+++CLLLF
Sbjct: 222 ------SQRMMQREKSLNRVSIFFLCCIILCLLLF 243

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BLAST of CsGy6G010600 vs. ExPASy Swiss-Prot
Match: P93030 (E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana OX=3702 GN=RMA2 PE=1 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.3e-30
Identity = 84/218 (38.53%), Postives = 111/218 (50.92%), Query Frame = 0


Query: 41  FDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHCKKLSAQRCQQVE-----CRCPVCKAKV 100
           FDCNICLD V+DPVVTLCGHLFCWPCI+KW +    S QR  Q +      +CPVCK+ V
Sbjct: 19  FDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDV 78

Query: 101 SRATLVPIYGKFQTTDASKAEAPPN-LGPAIPRRPLGRHACEAETPASPTTQLHSDNYSP 160
           S ATLVPIYG+ Q    S +  P    GP    R +G+   E E+               
Sbjct: 79  SEATLVPIYGRGQKAPQSGSNVPSRPTGPVYDLRGVGQRLGEGES--------------- 138

Query: 161 QSHSYYAQTQNEYIASSMLSSSSITTNIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYG 220
           Q + Y                      +  PV+G+  + +Y R FG +++N+  Y     
Sbjct: 139 QRYMY---------------------RMPDPVMGVVCEMVYRRLFGESSSNMAPY----- 193

Query: 221 NVSNSSVRLRRHIMQADESLSRICFFFFCCLVICLLLF 253
              + +VR RR  MQA+ESLSR+  F  C + +CL LF
Sbjct: 199 --RDMNVRSRRRAMQAEESLSRVYLFLLCFMFMCLFLF 193

[Close]

BLAST of CsGy6G010600 vs. ExPASy Swiss-Prot
Match: Q5ZIR9 (E3 ubiquitin-protein ligase RNF185 OS=Gallus gallus OX=9031 GN=RNF185 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.7e-15
Identity = 37/79 (46.84%), Postives = 52/79 (65.82%), Query Frame = 0


Query: 41  FDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHCKKLSAQRCQQVECRCPVCKAKVSRATL 100
           F+CNICLD+ +D V++LCGHLFCWPC+++WL  +       +QV   CPVCKA +SR  +
Sbjct: 39  FECNICLDTAKDAVISLCGHLFCWPCLHQWLETRP-----NRQV---CPVCKAGISRDKV 98

Query: 101 VPIYGKFQTTDASKAEAPP 120
           +P+YG+  T      E  P
Sbjct: 99  IPLYGRGSTGQQDPREKTP 109

[Close]

BLAST of CsGy6G010600 vs. NCBI nr
Match: XP_004139942.1 (E3 ubiquitin-protein ligase RMA1H1 [Cucumis sativus] >XP_031742415.1 E3 ubiquitin-protein ligase RMA1H1 [Cucumis sativus] >KGN46743.1 hypothetical protein Csa_020992 [Cucumis sativus])

HSP 1 Score: 513 bits (1320), Expect = 2.21e-183
Identity = 249/252 (98.81%), Postives = 251/252 (99.60%), Query Frame = 0


Query: 1   MEQEYLEETLMQNDNSLGGDKLCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLCGH 60
           MEQEYLEETLMQNDNSLGGD+LCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLCGH
Sbjct: 1   MEQEYLEETLMQNDNSLGGDRLCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLCGH 60

Query: 61  LFCWPCIYKWLHCKKLSAQRCQQVECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPPN 120
           LFCWPCIYKWLHCKKLSAQRCQQVECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPPN
Sbjct: 61  LFCWPCIYKWLHCKKLSAQRCQQVECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPPN 120

Query: 121 LGPAIPRRPLGRHACEAETPASPTTQLHSDNYSPQSHSYYAQTQNEYIASSMLSSSSITT 180
           LGPAIPRRPLGRHACEAETPASPT QLHSDNYSPQSHSYYAQTQNEYIASSMLSSSSITT
Sbjct: 121 LGPAIPRRPLGRHACEAETPASPTPQLHSDNYSPQSHSYYAQTQNEYIASSMLSSSSITT 180

Query: 181 NIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVSNSSVRLRRHIMQADESLSRICFF 240
           NIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNV+NSSVRLRRHIMQADESLSRICFF
Sbjct: 181 NIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVNNSSVRLRRHIMQADESLSRICFF 240

Query: 241 FFCCLVICLLLF 252
           FFCCLVICLLLF
Sbjct: 241 FFCCLVICLLLF 252

[Close]

BLAST of CsGy6G010600 vs. NCBI nr
Match: XP_008448288.1 (PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Cucumis melo] >XP_008448289.1 PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Cucumis melo] >XP_016900554.1 PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Cucumis melo])

HSP 1 Score: 478 bits (1231), Expect = 8.19e-170
Identity = 234/252 (92.86%), Postives = 241/252 (95.63%), Query Frame = 0


Query: 1   MEQEYLEETLMQNDNSLGGDKLCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLCGH 60
           MEQ+YLEE LM NDNSLGGDKL LD Q YISDAEDEASHGFDCNICLDSVQDPVVTLCGH
Sbjct: 1   MEQQYLEEALMPNDNSLGGDKLRLDIQTYISDAEDEASHGFDCNICLDSVQDPVVTLCGH 60

Query: 61  LFCWPCIYKWLHCKKLSAQRCQQVECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPPN 120
           LFCWPCIYKWLH KKLSAQ+CQQVECRCPVCKAKVSRATL+PIYGKFQTTDASKA+APPN
Sbjct: 61  LFCWPCIYKWLHSKKLSAQQCQQVECRCPVCKAKVSRATLIPIYGKFQTTDASKAKAPPN 120

Query: 121 LGPAIPRRPLGRHACEAETPASPTTQLHSDNYSPQSHSYYAQTQNEYIASSMLSSSSITT 180
           LGPAIPRRPLG HACEAETPASPT QLHS NYSPQSHSYY+QTQNEYI+SSMLSSSSITT
Sbjct: 121 LGPAIPRRPLGWHACEAETPASPTPQLHSHNYSPQSHSYYSQTQNEYISSSMLSSSSITT 180

Query: 181 NIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVSNSSVRLRRHIMQADESLSRICFF 240
           NIIHPVIGMFGDTIY RT GNTTTNLY+YPNSYGNVSNSSVRLRRHIMQADESLSRICFF
Sbjct: 181 NIIHPVIGMFGDTIYPRTLGNTTTNLYSYPNSYGNVSNSSVRLRRHIMQADESLSRICFF 240

Query: 241 FFCCLVICLLLF 252
           FFCCLVICLLLF
Sbjct: 241 FFCCLVICLLLF 252

[Close]

BLAST of CsGy6G010600 vs. NCBI nr
Match: XP_038901529.1 (E3 ubiquitin-protein ligase RMA1H1-like [Benincasa hispida])

HSP 1 Score: 419 bits (1078), Expect = 1.70e-146
Identity = 210/253 (83.00%), Postives = 225/253 (88.93%), Query Frame = 0


Query: 1   MEQEYLEETLMQNDNSLGGDKLCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLCGH 60
           ME +Y+EETL+QN+NSL G+KLCLDNQ  ISDA+D ASHGFDCNICLDSVQDPVVTLCGH
Sbjct: 1   MEHQYVEETLIQNNNSLRGNKLCLDNQTCISDADDGASHGFDCNICLDSVQDPVVTLCGH 60

Query: 61  LFCWPCIYKWLHCKKLSAQR-CQQVECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPP 120
           LFCWPCIYKWL  K LSAQ+ CQQ ECRCPVCKA+VS  TLVPIYGKFQT + SKA+AP 
Sbjct: 61  LFCWPCIYKWLQYKNLSAQQQCQQAECRCPVCKAEVSHTTLVPIYGKFQTINPSKAKAPS 120

Query: 121 NLGPAIPRRPLGRHACEAETPASPTTQLHSDNYSPQSHSYYAQTQNEYIASSMLSSSSIT 180
           NLGPAIPRRPLGR AC  E PASP+ QLH  NYSPQS+SYY++TQN YIASSMLSSSSIT
Sbjct: 121 NLGPAIPRRPLGR-ACGTEAPASPSPQLHPRNYSPQSNSYYSRTQNNYIASSMLSSSSIT 180

Query: 181 TNIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVSNSSVRLRRHIMQADESLSRICF 240
           TNIIHPVIGMFGD IY RTF NTT NLYTYPNSYG+VSNSSVRLRRHIMQADESLSRICF
Sbjct: 181 TNIIHPVIGMFGDAIYTRTFRNTTPNLYTYPNSYGHVSNSSVRLRRHIMQADESLSRICF 240

Query: 241 FFFCCLVICLLLF 252
           F FCCLVICLLLF
Sbjct: 241 FLFCCLVICLLLF 252

[Close]

BLAST of CsGy6G010600 vs. NCBI nr
Match: KAA0062066.1 (E3 ubiquitin-protein ligase RMA1H1 [Cucumis melo var. makuwa] >TYK04954.1 E3 ubiquitin-protein ligase RMA1H1 [Cucumis melo var. makuwa])

HSP 1 Score: 417 bits (1073), Expect = 9.45e-146
Identity = 202/220 (91.82%), Postives = 209/220 (95.00%), Query Frame = 0


Query: 1   MEQEYLEETLMQNDNSLGGDKLCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLCGH 60
           MEQ+YLEE LM NDNSLGGDKL LD Q YISDAEDEASHGFDCNICLDSVQDPVVTLCGH
Sbjct: 1   MEQQYLEEALMPNDNSLGGDKLRLDIQTYISDAEDEASHGFDCNICLDSVQDPVVTLCGH 60

Query: 61  LFCWPCIYKWLHCKKLSAQRCQQVECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPPN 120
           LFCWPCIYKWLH KKLSAQ+CQQVECRCPVCKAKVSRATL+PIYGKFQTTDASKA+APPN
Sbjct: 61  LFCWPCIYKWLHSKKLSAQQCQQVECRCPVCKAKVSRATLIPIYGKFQTTDASKAKAPPN 120

Query: 121 LGPAIPRRPLGRHACEAETPASPTTQLHSDNYSPQSHSYYAQTQNEYIASSMLSSSSITT 180
           LGPAIPRRPLG HACEAETPASPT QLHS NYSPQSHSYY+QTQNEYI+SSMLSSSSITT
Sbjct: 121 LGPAIPRRPLGWHACEAETPASPTPQLHSHNYSPQSHSYYSQTQNEYISSSMLSSSSITT 180

Query: 181 NIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVSNSS 220
           NIIHPVIGMFGDTIY RT GNTTTNLY+YPNSYGNVSNSS
Sbjct: 181 NIIHPVIGMFGDTIYPRTLGNTTTNLYSYPNSYGNVSNSS 220

[Close]

BLAST of CsGy6G010600 vs. NCBI nr
Match: XP_022140292.1 (E3 ubiquitin-protein ligase RMA1H1-like [Momordica charantia] >XP_022140293.1 E3 ubiquitin-protein ligase RMA1H1-like [Momordica charantia])

HSP 1 Score: 363 bits (933), Expect = 2.04e-124
Identity = 185/254 (72.83%), Postives = 210/254 (82.68%), Query Frame = 0


Query: 1   MEQEYLEETLMQNDNSLGGDKLCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLCGH 60
           MEQ+YLEET+M++ NS G DK CLDNQ  +SDA+  ASHGFDCNICLDSVQDPVVTLCGH
Sbjct: 1   MEQQYLEETVMRS-NSFGEDKFCLDNQTCVSDADGGASHGFDCNICLDSVQDPVVTLCGH 60

Query: 61  LFCWPCIYKWLHCKKLSAQR-CQQVECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPP 120
           LFCWPCIYKWLH K LSAQ+ CQ  E  CPVCKA+VS A+LVP+YG+FQTT+ S+ +A  
Sbjct: 61  LFCWPCIYKWLHYKNLSAQQQCQPQENCCPVCKAEVSHASLVPLYGRFQTTNPSETKAS- 120

Query: 121 NLGPAIPRRPLGRHACEAETPASPTTQLHSDNYS-PQSHSYYAQTQNEYIASSMLSSSSI 180
            LGPAIPRRPLG     AE PASP+ QLH  NY  P +HSY+ +T  +YI SSML SSSI
Sbjct: 121 QLGPAIPRRPLGPACGAAEAPASPSPQLHPHNYYLPHAHSYHPRTTQDYITSSMLGSSSI 180

Query: 181 TTNIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVSNSSVRLRRHIMQADESLSRIC 240
           TTNIIHPVIG FG+ IYAR FGNTTT+L+TYPNSYG+VSNSS RLRRH+MQADESLSRIC
Sbjct: 181 TTNIIHPVIGTFGEAIYARAFGNTTTSLHTYPNSYGHVSNSSARLRRHMMQADESLSRIC 240

Query: 241 FFFFCCLVICLLLF 252
           FFFFCCLV+C L F
Sbjct: 241 FFFFCCLVLCFLSF 252

[Close]

BLAST of CsGy6G010600 vs. ExPASy TrEMBL
Match: A0A0A0KB39 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G128040 PE=4 SV=1)

HSP 1 Score: 513 bits (1320), Expect = 1.07e-183
Identity = 249/252 (98.81%), Postives = 251/252 (99.60%), Query Frame = 0


Query: 1   MEQEYLEETLMQNDNSLGGDKLCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLCGH 60
           MEQEYLEETLMQNDNSLGGD+LCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLCGH
Sbjct: 1   MEQEYLEETLMQNDNSLGGDRLCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLCGH 60

Query: 61  LFCWPCIYKWLHCKKLSAQRCQQVECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPPN 120
           LFCWPCIYKWLHCKKLSAQRCQQVECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPPN
Sbjct: 61  LFCWPCIYKWLHCKKLSAQRCQQVECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPPN 120

Query: 121 LGPAIPRRPLGRHACEAETPASPTTQLHSDNYSPQSHSYYAQTQNEYIASSMLSSSSITT 180
           LGPAIPRRPLGRHACEAETPASPT QLHSDNYSPQSHSYYAQTQNEYIASSMLSSSSITT
Sbjct: 121 LGPAIPRRPLGRHACEAETPASPTPQLHSDNYSPQSHSYYAQTQNEYIASSMLSSSSITT 180

Query: 181 NIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVSNSSVRLRRHIMQADESLSRICFF 240
           NIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNV+NSSVRLRRHIMQADESLSRICFF
Sbjct: 181 NIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVNNSSVRLRRHIMQADESLSRICFF 240

Query: 241 FFCCLVICLLLF 252
           FFCCLVICLLLF
Sbjct: 241 FFCCLVICLLLF 252

[Close]

BLAST of CsGy6G010600 vs. ExPASy TrEMBL
Match: A0A1S3BJB6 (E3 ubiquitin-protein ligase RMA1H1 OS=Cucumis melo OX=3656 GN=LOC103490524 PE=4 SV=1)

HSP 1 Score: 478 bits (1231), Expect = 3.97e-170
Identity = 234/252 (92.86%), Postives = 241/252 (95.63%), Query Frame = 0


Query: 1   MEQEYLEETLMQNDNSLGGDKLCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLCGH 60
           MEQ+YLEE LM NDNSLGGDKL LD Q YISDAEDEASHGFDCNICLDSVQDPVVTLCGH
Sbjct: 1   MEQQYLEEALMPNDNSLGGDKLRLDIQTYISDAEDEASHGFDCNICLDSVQDPVVTLCGH 60

Query: 61  LFCWPCIYKWLHCKKLSAQRCQQVECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPPN 120
           LFCWPCIYKWLH KKLSAQ+CQQVECRCPVCKAKVSRATL+PIYGKFQTTDASKA+APPN
Sbjct: 61  LFCWPCIYKWLHSKKLSAQQCQQVECRCPVCKAKVSRATLIPIYGKFQTTDASKAKAPPN 120

Query: 121 LGPAIPRRPLGRHACEAETPASPTTQLHSDNYSPQSHSYYAQTQNEYIASSMLSSSSITT 180
           LGPAIPRRPLG HACEAETPASPT QLHS NYSPQSHSYY+QTQNEYI+SSMLSSSSITT
Sbjct: 121 LGPAIPRRPLGWHACEAETPASPTPQLHSHNYSPQSHSYYSQTQNEYISSSMLSSSSITT 180

Query: 181 NIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVSNSSVRLRRHIMQADESLSRICFF 240
           NIIHPVIGMFGDTIY RT GNTTTNLY+YPNSYGNVSNSSVRLRRHIMQADESLSRICFF
Sbjct: 181 NIIHPVIGMFGDTIYPRTLGNTTTNLYSYPNSYGNVSNSSVRLRRHIMQADESLSRICFF 240

Query: 241 FFCCLVICLLLF 252
           FFCCLVICLLLF
Sbjct: 241 FFCCLVICLLLF 252

[Close]

BLAST of CsGy6G010600 vs. ExPASy TrEMBL
Match: A0A5A7V6F7 (E3 ubiquitin-protein ligase RMA1H1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G001700 PE=4 SV=1)

HSP 1 Score: 417 bits (1073), Expect = 4.58e-146
Identity = 202/220 (91.82%), Postives = 209/220 (95.00%), Query Frame = 0


Query: 1   MEQEYLEETLMQNDNSLGGDKLCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLCGH 60
           MEQ+YLEE LM NDNSLGGDKL LD Q YISDAEDEASHGFDCNICLDSVQDPVVTLCGH
Sbjct: 1   MEQQYLEEALMPNDNSLGGDKLRLDIQTYISDAEDEASHGFDCNICLDSVQDPVVTLCGH 60

Query: 61  LFCWPCIYKWLHCKKLSAQRCQQVECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPPN 120
           LFCWPCIYKWLH KKLSAQ+CQQVECRCPVCKAKVSRATL+PIYGKFQTTDASKA+APPN
Sbjct: 61  LFCWPCIYKWLHSKKLSAQQCQQVECRCPVCKAKVSRATLIPIYGKFQTTDASKAKAPPN 120

Query: 121 LGPAIPRRPLGRHACEAETPASPTTQLHSDNYSPQSHSYYAQTQNEYIASSMLSSSSITT 180
           LGPAIPRRPLG HACEAETPASPT QLHS NYSPQSHSYY+QTQNEYI+SSMLSSSSITT
Sbjct: 121 LGPAIPRRPLGWHACEAETPASPTPQLHSHNYSPQSHSYYSQTQNEYISSSMLSSSSITT 180

Query: 181 NIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVSNSS 220
           NIIHPVIGMFGDTIY RT GNTTTNLY+YPNSYGNVSNSS
Sbjct: 181 NIIHPVIGMFGDTIYPRTLGNTTTNLYSYPNSYGNVSNSS 220

[Close]

BLAST of CsGy6G010600 vs. ExPASy TrEMBL
Match: A0A6J1CHP4 (E3 ubiquitin-protein ligase RMA1H1-like OS=Momordica charantia OX=3673 GN=LOC111010997 PE=4 SV=1)

HSP 1 Score: 363 bits (933), Expect = 9.87e-125
Identity = 185/254 (72.83%), Postives = 210/254 (82.68%), Query Frame = 0


Query: 1   MEQEYLEETLMQNDNSLGGDKLCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLCGH 60
           MEQ+YLEET+M++ NS G DK CLDNQ  +SDA+  ASHGFDCNICLDSVQDPVVTLCGH
Sbjct: 1   MEQQYLEETVMRS-NSFGEDKFCLDNQTCVSDADGGASHGFDCNICLDSVQDPVVTLCGH 60

Query: 61  LFCWPCIYKWLHCKKLSAQR-CQQVECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPP 120
           LFCWPCIYKWLH K LSAQ+ CQ  E  CPVCKA+VS A+LVP+YG+FQTT+ S+ +A  
Sbjct: 61  LFCWPCIYKWLHYKNLSAQQQCQPQENCCPVCKAEVSHASLVPLYGRFQTTNPSETKAS- 120

Query: 121 NLGPAIPRRPLGRHACEAETPASPTTQLHSDNYS-PQSHSYYAQTQNEYIASSMLSSSSI 180
            LGPAIPRRPLG     AE PASP+ QLH  NY  P +HSY+ +T  +YI SSML SSSI
Sbjct: 121 QLGPAIPRRPLGPACGAAEAPASPSPQLHPHNYYLPHAHSYHPRTTQDYITSSMLGSSSI 180

Query: 181 TTNIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVSNSSVRLRRHIMQADESLSRIC 240
           TTNIIHPVIG FG+ IYAR FGNTTT+L+TYPNSYG+VSNSS RLRRH+MQADESLSRIC
Sbjct: 181 TTNIIHPVIGTFGEAIYARAFGNTTTSLHTYPNSYGHVSNSSARLRRHMMQADESLSRIC 240

Query: 241 FFFFCCLVICLLLF 252
           FFFFCCLV+C L F
Sbjct: 241 FFFFCCLVLCFLSF 252

[Close]

BLAST of CsGy6G010600 vs. ExPASy TrEMBL
Match: A0A6J1FXR1 (E3 ubiquitin-protein ligase RMA1H1-like OS=Cucurbita moschata OX=3662 GN=LOC111448157 PE=4 SV=1)

HSP 1 Score: 348 bits (893), Expect = 4.07e-119
Identity = 174/228 (76.32%), Postives = 194/228 (85.09%), Query Frame = 0


Query: 27  QIY-ISDAEDEASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHCKKLSAQR-CQQV 86
           Q+Y + +A++  SHGF+CNICLDSVQDPVVTLCGHLFCWPCIYKW+H K LS+Q+ CQQ 
Sbjct: 3   QLYLVPEADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQQE 62

Query: 87  ECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPPNLGPAIPRRPLGRHACEAETPASPT 146
           ECRCPVCKA+VS ATLVP+YGKFQTT  SK + P NLGPAIPRRPLG  AC  E PASP+
Sbjct: 63  ECRCPVCKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGP-ACGGEPPASPS 122

Query: 147 TQLHSDNYSPQSHSYYAQTQNEYIASSMLSSSSITTNIIHPVIGMFGDTIYARTFGNTTT 206
            QLH  NYS        Q+ ++YIASSMLSSSSITTNIIHPVIGMFGD +Y RTFGNTT+
Sbjct: 123 AQLHHHNYS--------QSHDDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTS 182

Query: 207 NLYTYPNSYGNVSNSSVRLRRHIMQADESLSRICFFFFCCLVICLLLF 252
           NLYTYPNSYG+VSNSSVRLRRHIMQADESLSRICFF FCCLV+CLLLF
Sbjct: 183 NLYTYPNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 221

[Close]

BLAST of CsGy6G010600 vs. TAIR 10
Match: AT4G03510.1 (RING membrane-anchor 1 )

HSP 1 Score: 173.7 bits (439), Expect = 1.9e-43
Identity = 96/221 (43.44%), Postives = 136/221 (61.54%), Query Frame = 0


Query: 33  AEDEASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHCKKLSAQRCQQVECRCPVCK 92
           ++D     FDCNICLDSVQ+PVVTLCGHLFCWPCI+KWL  +  S     Q   +CPVCK
Sbjct: 38  SDDTDDSNFDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCK 97

Query: 93  AKVSRATLVPIYGKFQTTDASKAEAPPNLGPAIPRRPLGRHACEAETPASPTTQLHSDNY 152
           +KVS +TLVP+YG+ + T   + +       ++P+RP+G      E P SP     +D  
Sbjct: 98  SKVSHSTLVPLYGRGRCTTQEEGK------NSVPKRPVG-PVYRLEMPNSPYAS--TDLR 157

Query: 153 SPQSHSYYAQTQNEYIASSMLSSSSIT-TNIIHPVIGMFGDTIYARTFGNTTTNLYTYPN 212
             Q   + +  +  Y  S ++SS+S++ + ++ PV+ M G+ +  R FG    + + YP+
Sbjct: 158 LSQRVHFNSPQEGYYPVSGVMSSNSLSYSAVLDPVMVMVGEMVATRLFGTRVMDRFAYPD 217

Query: 213 SYGNVSNSSVRLRRHIMQADESLSRICFFFFCCLVICLLLF 253
           +Y     S  R+RR IMQAD+SL RI FFF CC+V+CLLLF
Sbjct: 218 TYNLAGTSGPRMRRRIMQADKSLGRIFFFFMCCVVLCLLLF 249

[Close]

BLAST of CsGy6G010600 vs. TAIR 10
Match: AT4G03510.2 (RING membrane-anchor 1 )

HSP 1 Score: 173.7 bits (439), Expect = 1.9e-43
Identity = 96/221 (43.44%), Postives = 136/221 (61.54%), Query Frame = 0


Query: 33  AEDEASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHCKKLSAQRCQQVECRCPVCK 92
           ++D     FDCNICLDSVQ+PVVTLCGHLFCWPCI+KWL  +  S     Q   +CPVCK
Sbjct: 38  SDDTDDSNFDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCK 97

Query: 93  AKVSRATLVPIYGKFQTTDASKAEAPPNLGPAIPRRPLGRHACEAETPASPTTQLHSDNY 152
           +KVS +TLVP+YG+ + T   + +       ++P+RP+G      E P SP     +D  
Sbjct: 98  SKVSHSTLVPLYGRGRCTTQEEGK------NSVPKRPVG-PVYRLEMPNSPYAS--TDLR 157

Query: 153 SPQSHSYYAQTQNEYIASSMLSSSSIT-TNIIHPVIGMFGDTIYARTFGNTTTNLYTYPN 212
             Q   + +  +  Y  S ++SS+S++ + ++ PV+ M G+ +  R FG    + + YP+
Sbjct: 158 LSQRVHFNSPQEGYYPVSGVMSSNSLSYSAVLDPVMVMVGEMVATRLFGTRVMDRFAYPD 217

Query: 213 SYGNVSNSSVRLRRHIMQADESLSRICFFFFCCLVICLLLF 253
           +Y     S  R+RR IMQAD+SL RI FFF CC+V+CLLLF
Sbjct: 218 TYNLAGTSGPRMRRRIMQADKSLGRIFFFFMCCVVLCLLLF 249

[Close]

BLAST of CsGy6G010600 vs. TAIR 10
Match: AT4G27470.1 (RING membrane-anchor 3 )

HSP 1 Score: 149.4 bits (376), Expect = 3.8e-36
Identity = 87/215 (40.47%), Postives = 122/215 (56.74%), Query Frame = 0


Query: 41  FDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHCKKLSAQRCQQVECRCPVCKAKVSRATL 100
           FDCNICLD+  DPVVTLCGHLFCWPCIYKWLH  +LS+    Q +  CPVCK+ ++  +L
Sbjct: 42  FDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHV-QLSSVSVDQHQNNCPVCKSNITITSL 101

Query: 101 VPIYGKFQTTDASK--AEAPPNLGPAIPRRPLGRHACEAETPASP-TTQLHSDNYSPQSH 160
           VP+YG+  ++ +S   ++    L   IPRRP         T AS     L     SP  H
Sbjct: 102 VPLYGRGMSSPSSTFGSKKQDALSTDIPRRPAPSALRNPITSASSLNPSLQHQTLSPSFH 161

Query: 161 SYYAQTQNEYIASSMLSSSSITTNIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVS 220
           ++    +      S   ++++  + ++PVIGMFGD +Y R FG T TN    P       
Sbjct: 162 NHQYSPRGFTTTESTDLANAVMMSFLYPVIGMFGDLVYTRIFG-TFTNTIAQPYQ----- 221

Query: 221 NSSVRLRRHIMQADESLSRICFFFFCCLVICLLLF 253
                  + +MQ ++SL+R+  FF CC+++CLLLF
Sbjct: 222 ------SQRMMQREKSLNRVSIFFLCCIILCLLLF 243

[Close]

BLAST of CsGy6G010600 vs. TAIR 10
Match: AT4G28270.1 (RING membrane-anchor 2 )

HSP 1 Score: 134.0 bits (336), Expect = 1.6e-31
Identity = 84/218 (38.53%), Postives = 111/218 (50.92%), Query Frame = 0


Query: 41  FDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHCKKLSAQRCQQVE-----CRCPVCKAKV 100
           FDCNICLD V+DPVVTLCGHLFCWPCI+KW +    S QR  Q +      +CPVCK+ V
Sbjct: 19  FDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDV 78

Query: 101 SRATLVPIYGKFQTTDASKAEAPPN-LGPAIPRRPLGRHACEAETPASPTTQLHSDNYSP 160
           S ATLVPIYG+ Q    S +  P    GP    R +G+   E E+               
Sbjct: 79  SEATLVPIYGRGQKAPQSGSNVPSRPTGPVYDLRGVGQRLGEGES--------------- 138

Query: 161 QSHSYYAQTQNEYIASSMLSSSSITTNIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYG 220
           Q + Y                      +  PV+G+  + +Y R FG +++N+  Y     
Sbjct: 139 QRYMY---------------------RMPDPVMGVVCEMVYRRLFGESSSNMAPY----- 193

Query: 221 NVSNSSVRLRRHIMQADESLSRICFFFFCCLVICLLLF 253
              + +VR RR  MQA+ESLSR+  F  C + +CL LF
Sbjct: 199 --RDMNVRSRRRAMQAEESLSRVYLFLLCFMFMCLFLF 193

[Close]

BLAST of CsGy6G010600 vs. TAIR 10
Match: AT1G19310.1 (RING/U-box superfamily protein )

HSP 1 Score: 105.9 bits (263), Expect = 4.8e-23
Identity = 49/110 (44.55%), Postives = 67/110 (60.91%), Query Frame = 0


Query: 31  SDAEDEASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHCKKLSAQRCQQVECRCPV 90
           +D  +  S  F+CNICLD  QDP+VTLCGHLFCWPC+YKWLH    S          CPV
Sbjct: 11  NDTNNNDSSNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHLHSQSKD--------CPV 70

Query: 91  CKAKVSRATLVPIYGKFQTTDASKAEAPPNLGPAIPRRPLGRHACEAETP 141
           CKA +    LVP+YG+ +++   ++++ P L   +P RP G+    A+ P
Sbjct: 71  CKAVIEEDRLVPLYGRGKSSADPRSKSIPGL--EVPNRPSGQRPETAQPP 110

The following BLAST results are available for this feature:

BLAST of CsGy6G010600 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6R567	6.0e-55	46.30	E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=...	[more]
O64425	2.6e-42	43.44	E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV...	[more]
Q8GUK7	5.3e-35	40.47	E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV...	[more]
P93030	2.3e-30	38.53	E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana OX=3702 GN=RMA2 PE=1 SV...	[more]
Q5ZIR9	2.7e-15	46.84	E3 ubiquitin-protein ligase RNF185 OS=Gallus gallus OX=9031 GN=RNF185 PE=2 SV=1	[more]

BLAST of CsGy6G010600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139942.1	2.21e-183	98.81	E3 ubiquitin-protein ligase RMA1H1 [Cucumis sativus] >XP_031742415.1 E3 ubiquiti...	[more]
XP_008448288.1	8.19e-170	92.86	PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Cucumis melo] >XP_008448289.1 PRE...	[more]
XP_038901529.1	1.70e-146	83.00	E3 ubiquitin-protein ligase RMA1H1-like [Benincasa hispida]	[more]
KAA0062066.1	9.45e-146	91.82	E3 ubiquitin-protein ligase RMA1H1 [Cucumis melo var. makuwa] >TYK04954.1 E3 ubi...	[more]
XP_022140292.1	2.04e-124	72.83	E3 ubiquitin-protein ligase RMA1H1-like [Momordica charantia] >XP_022140293.1 E3...	[more]

BLAST of CsGy6G010600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KB39	1.07e-183	98.81	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G128040 P...	[more]
A0A1S3BJB6	3.97e-170	92.86	E3 ubiquitin-protein ligase RMA1H1 OS=Cucumis melo OX=3656 GN=LOC103490524 PE=4 ...	[more]
A0A5A7V6F7	4.58e-146	91.82	E3 ubiquitin-protein ligase RMA1H1 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A6J1CHP4	9.87e-125	72.83	E3 ubiquitin-protein ligase RMA1H1-like OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J1FXR1	4.07e-119	76.32	E3 ubiquitin-protein ligase RMA1H1-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]

BLAST of CsGy6G010600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G03510.1	1.9e-43	43.44	RING membrane-anchor 1	[more]
AT4G03510.2	1.9e-43	43.44	RING membrane-anchor 1	[more]
AT4G27470.1	3.8e-36	40.47	RING membrane-anchor 3	[more]
AT4G28270.1	1.6e-31	38.53	RING membrane-anchor 2	[more]
AT1G19310.1	4.8e-23	44.55	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 43..91 e-value: 4.9E-7 score: 39.4
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 43..92 score: 12.533537
IPR027370	RING-type zinc-finger, LisH dimerisation motif	PFAM	PF13445	zf-RING_UBOX	coord: 43..88 e-value: 5.5E-7 score: 29.5
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 24..121 e-value: 1.6E-16 score: 62.1
IPR045103	E3 ubiquitin-protein ligase RNF5/RNF185-like	PANTHER	PTHR12313	E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED	coord: 1..252
None	No IPR available	PANTHER	PTHR12313:SF75	SUBFAMILY NOT NAMED	coord: 1..252
None	No IPR available	CDD	cd16745	RING-HC_AtRMA_like	coord: 41..93 e-value: 1.78695E-22 score: 85.0484
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 37..105
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 58..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G010600.1	CsGy6G010600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071712	ER-associated misfolded protein catabolic process
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0044390	ubiquitin-like protein conjugating enzyme binding
molecular_function	GO:0061630	ubiquitin protein ligase activity