CsGy6G009610 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G009610
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	RING-type domain-containing protein
Location	Gy14Chr6: 8087123 .. 8087745 (-)
RNA-Seq Expression	CsGy6G009610
Synteny	CsGy6G009610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTAAACTCTCTCTCTCTCTCCCTCTGTGTGTGTGTCTTAAAATGTTGGGTTTGTTTTGGCTCCTTTCCCCTATGCGATTCCCCATCCTTTTCTTCAACACTTTCCTCTGGATTCCGCTTTTTCGTATCAATCAAGCCATTCTGGGCGTGGTGGCTACTGTTTTTGGCCTGCCCTCCTCCCCAGAACATGGAACTGACCTTCTGGTGGTGAGGTCATACGATGAGGATGGAGGATCCTCAGAGGAGATTTGCTCCATCTGTTTGACAGAGTTTGGTAGATCAGGAGATTCGGTGTGTAAGTTACCGAATTGTGAGCATTTATTTCATTTCAATTGCATCCAGGAATGGATCGACAGGAATCGCTTCACTTGTCCCCTCTGTAGATGCTTCTTCTTCTTCGAAGACAACCGCAAGATGGACACCAAGTGGAGCTTCCTCGTCCCTGACAATCCCTCCTCTCTCTATTACTTCCTGCAGTGATTTGATGATCATCATCTGTACATTTTTTTTTTTTTTTGATTTGGAAATTTGTAGTTCTTCAATCTCCATTCTTTTCTGTGTAAATGTCTTTTCAATAATCAGCTGCATATACAAAAAACCTTCCTTCTTCAAATGCAAAACTC

mRNA sequence

CCTAAACTCTCTCTCTCTCTCCCTCTGTGTGTGTGTCTTAAAATGTTGGGTTTGTTTTGGCTCCTTTCCCCTATGCGATTCCCCATCCTTTTCTTCAACACTTTCCTCTGGATTCCGCTTTTTCGTATCAATCAAGCCATTCTGGGCGTGGTGGCTACTGTTTTTGGCCTGCCCTCCTCCCCAGAACATGGAACTGACCTTCTGGTGGTGAGGTCATACGATGAGGATGGAGGATCCTCAGAGGAGATTTGCTCCATCTGTTTGACAGAGTTTGGTAGATCAGGAGATTCGGTGTGTAAGTTACCGAATTGTGAGCATTTATTTCATTTCAATTGCATCCAGGAATGGATCGACAGGAATCGCTTCACTTGTCCCCTCTGTAGATGCTTCTTCTTCTTCGAAGACAACCGCAAGATGGACACCAAGTGGAGCTTCCTCGTCCCTGACAATCCCTCCTCTCTCTATTACTTCCTGCAGTGATTTGATGATCATCATCTGTACATTTTTTTTTTTTTTTGATTTGGAAATTTGTAGTTCTTCAATCTCCATTCTTTTCTGTGTAAATGTCTTTTCAATAATCAGCTGCATATACAAAAAACCTTCCTTCTTCAAATGCAAAACTC

Coding sequence (CDS)

ATGTTGGGTTTGTTTTGGCTCCTTTCCCCTATGCGATTCCCCATCCTTTTCTTCAACACTTTCCTCTGGATTCCGCTTTTTCGTATCAATCAAGCCATTCTGGGCGTGGTGGCTACTGTTTTTGGCCTGCCCTCCTCCCCAGAACATGGAACTGACCTTCTGGTGGTGAGGTCATACGATGAGGATGGAGGATCCTCAGAGGAGATTTGCTCCATCTGTTTGACAGAGTTTGGTAGATCAGGAGATTCGGTGTGTAAGTTACCGAATTGTGAGCATTTATTTCATTTCAATTGCATCCAGGAATGGATCGACAGGAATCGCTTCACTTGTCCCCTCTGTAGATGCTTCTTCTTCTTCGAAGACAACCGCAAGATGGACACCAAGTGGAGCTTCCTCGTCCCTGACAATCCCTCCTCTCTCTATTACTTCCTGCAGTGA

Protein sequence

MLGLFWLLSPMRFPILFFNTFLWIPLFRINQAILGVVATVFGLPSSPEHGTDLLVVRSYDEDGGSSEEICSICLTEFGRSGDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCRCFFFFEDNRKMDTKWSFLVPDNPSSLYYFLQ*

Homology

[Close]

BLAST of CsGy6G009610 vs. ExPASy Swiss-Prot
Match: Q9SZL4 (RING-H2 finger protein ATL18 OS=Arabidopsis thaliana OX=3702 GN=ATL18 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.6e-10
Identity = 43/117 (36.75%), Postives = 61/117 (52.14%), Query Frame = 0


Query: 1   MLGLFWLLSPMRFPILFFNTFLWIPLFRINQAILGVVATVFGLPSSPEHGTDLLVVRSYD 60
           M+ + +  SP+    + F T + IPL R+ +             +  + G +L+ V   D
Sbjct: 1   MISMLFPRSPLCTAAIVFYTCVCIPLGRLKK-------NGGDADAHDDDGYNLVGVMFGD 60

Query: 61  EDGGSSEEI-CSICLTEFGRSGDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCRCF 117
           ++    EEI C ICL EF  + D+V  LP C HLFH NCI+ W+ R   TCPLCR F
Sbjct: 61  KE--KEEEICCPICLVEF-EAEDAVTHLPRCAHLFHINCIEPWLLRGHLTCPLCRSF 107

[Close]

BLAST of CsGy6G009610 vs. ExPASy Swiss-Prot
Match: Q9SUS5 (E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana OX=3702 GN=RHA1B PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-08
Identity = 30/84 (35.71%), Postives = 47/84 (55.95%), Query Frame = 0


Query: 39  TVFGLPSSPEHGTDLLVVRSYDEDGGSSEEICSICLTEFGRSGDSVCKLPNCEHLFHFNC 98
           T   L +S     +L+ V  + +     E+ C++CL++F  S D + +LP C H+FH  C
Sbjct: 54  TRLALSTSATLANELIPVVRFSDLLTDPEDCCTVCLSDF-VSDDKIRQLPKCGHVFHHRC 113

Query: 99  IQEWI-DRNRFTCPLCRCFFFFED 122
           +  WI D N+ TCP+CR  F  E+
Sbjct: 114 LDRWIVDCNKITCPICRNRFLPEE 136

[Close]

BLAST of CsGy6G009610 vs. ExPASy Swiss-Prot
Match: Q9SUS4 (Probable E3 ubiquitin-protein ligase RHA1A OS=Arabidopsis thaliana OX=3702 GN=RHA1A PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.2e-08
Identity = 30/95 (31.58%), Postives = 49/95 (51.58%), Query Frame = 0


Query: 21  FLWIPLFRINQAILGVVATVFGLPSSPEHGTDLLVVRSYDEDGGSSEEICSICLTEFGRS 80
           ++ +P F  +        T   L +S     +L+ V  + +     E+ C++CL++F  S
Sbjct: 37  YIGLPRFLDHNETSAPDLTRHALSTSASLANELIPVVRFSDLPTDPEDCCTVCLSDF-ES 96

Query: 81  GDSVCKLPNCEHLFHFNCIQEWI-DRNRFTCPLCR 115
            D V +LP C H+FH  C+  WI D N+  CP+CR
Sbjct: 97  DDKVRQLPKCGHVFHHYCLDRWIVDYNKMKCPVCR 130

[Close]

BLAST of CsGy6G009610 vs. ExPASy Swiss-Prot
Match: Q8GW38 (RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 9.3e-08
Identity = 31/68 (45.59%), Postives = 37/68 (54.41%), Query Frame = 0


Query: 52  DLLVVRSYDEDGGSSEEI-CSICLTEFGRSGDSVCKLPNCEHLFHFNCIQEWIDRNRFTC 111
           D L V  Y E  G+ E   C++CL EF    D +  LPNC H FH +CI  W+  N  TC
Sbjct: 125 DALPVFLYKEIKGTKEPFDCAVCLCEFSED-DKLRLLPNCSHAFHIDCIDTWLLSNS-TC 184

Query: 112 PLCRCFFF 119
           PLCR   F
Sbjct: 185 PLCRGTLF 190

[Close]

BLAST of CsGy6G009610 vs. ExPASy Swiss-Prot
Match: Q9XF92 (Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.1e-07
Identity = 26/69 (37.68%), Postives = 41/69 (59.42%), Query Frame = 0


Query: 52  DLLVVRSYDEDGGSSEEI---CSICLTEFGRSGDSVCKLPNCEHLFHFNCIQEWIDRNRF 111
           ++L V  ++E   S E++   C++CL EF      +  L NC H+FH +C+  W+D ++ 
Sbjct: 73  EILPVIKFEELTNSGEDLPENCAVCLYEF-EGEQEIRWLRNCRHIFHRSCLDRWMDHDQK 132

Query: 112 TCPLCRCFF 118
           TCPLCR  F
Sbjct: 133 TCPLCRTPF 140

[Close]

BLAST of CsGy6G009610 vs. NCBI nr
Match: KAA0047798.1 (RING-H2 finger protein ATL18-like [Cucumis melo var. makuwa])

HSP 1 Score: 279 bits (713), Expect = 2.26e-94
Identity = 133/146 (91.10%), Postives = 139/146 (95.21%), Query Frame = 0


Query: 1   MLGLFWLLSPMRFPILFFNTFLWIPLFRINQAILGVVATVFGLPSSPEHGTDLLVVRSYD 60
           MLGLF+L+SPMRFPILFF+TFLWIPLFR+ QAILGVVATVFGLPSSP+HGTDL+VVRSYD
Sbjct: 1   MLGLFYLVSPMRFPILFFSTFLWIPLFRMKQAILGVVATVFGLPSSPQHGTDLVVVRSYD 60

Query: 61  ED-GGSSEEICSICLTEFGRSGDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCRCFFFF 120
           ED GGSSEEICSICLTEFGRS DSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCRC FF 
Sbjct: 61  EDHGGSSEEICSICLTEFGRSEDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCRC-FFL 120

Query: 121 EDNRKMDTKWSFLVPDNPSSLYYFLQ 145
           EDN KMDTKW FLVPDNPSSLYYFLQ
Sbjct: 121 EDNHKMDTKWRFLVPDNPSSLYYFLQ 145

[Close]

BLAST of CsGy6G009610 vs. NCBI nr
Match: TYK01060.1 (RING-H2 finger protein ATL18-like [Cucumis melo var. makuwa])

HSP 1 Score: 276 bits (707), Expect = 1.86e-93
Identity = 132/146 (90.41%), Postives = 138/146 (94.52%), Query Frame = 0


Query: 1   MLGLFWLLSPMRFPILFFNTFLWIPLFRINQAILGVVATVFGLPSSPEHGTDLLVVRSYD 60
           MLGLF+L+SPMRFPILFF+TFLWIPLFR+ QAILGVVATVFG PSSP+HGTDL+VVRSYD
Sbjct: 1   MLGLFYLVSPMRFPILFFSTFLWIPLFRMKQAILGVVATVFGRPSSPQHGTDLVVVRSYD 60

Query: 61  ED-GGSSEEICSICLTEFGRSGDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCRCFFFF 120
           ED GGSSEEICSICLTEFGRS DSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCRC FF 
Sbjct: 61  EDHGGSSEEICSICLTEFGRSEDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCRC-FFL 120

Query: 121 EDNRKMDTKWSFLVPDNPSSLYYFLQ 145
           EDN KMDTKW FLVPDNPSSLYYFLQ
Sbjct: 121 EDNHKMDTKWRFLVPDNPSSLYYFLQ 145

[Close]

BLAST of CsGy6G009610 vs. NCBI nr
Match: XP_022944066.1 (RING-H2 finger protein ATL18-like [Cucurbita moschata] >KAG6570951.1 RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 171 bits (434), Expect = 8.21e-52
Identity = 91/153 (59.48%), Postives = 111/153 (72.55%), Query Frame = 0


Query: 1   MLGLFWLLSPMRFPILFFNTFLWIPLFRINQAILGVVATVFGLPSSPEHGTD---LLVVR 60
           MLGL +L S +   I+FFNTF+WIPLFR+ +AILG VA+VF L S PE  +     L+VR
Sbjct: 1   MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILG-VASVFRLVSLPEMDSSRGGTLLVR 60

Query: 61  SYDE-----DGGSSEEICSICLTEFGRSGDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPL 120
            Y+E     D    EE+CSICLTEF R  DSVCKLP+C H+FHF+CI++W +RNRFTCPL
Sbjct: 61  RYEELQRSDDRAEEEEMCSICLTEFARE-DSVCKLPDCAHVFHFDCIEKWHERNRFTCPL 120

Query: 121 CRCFFFFEDNRKMDTKWSFLVPDNPSSLYYFLQ 145
           CRCFF  E +   + K  F+VPDNPSSLYYFLQ
Sbjct: 121 CRCFFNIEKHH--EKKLRFVVPDNPSSLYYFLQ 149

[Close]

BLAST of CsGy6G009610 vs. NCBI nr
Match: XP_023512248.1 (RING-H2 finger protein ATL18-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 171 bits (433), Expect = 1.17e-51
Identity = 91/153 (59.48%), Postives = 111/153 (72.55%), Query Frame = 0


Query: 1   MLGLFWLLSPMRFPILFFNTFLWIPLFRINQAILGVVATVFGLPSSPEHGTD---LLVVR 60
           MLGL +L S +   I+FFNTF+WIPLFR+ +AILG VA+VF L S PE  +     L+VR
Sbjct: 1   MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILG-VASVFRLASLPEMDSSRGGTLLVR 60

Query: 61  SYDE-----DGGSSEEICSICLTEFGRSGDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPL 120
            Y+E     D    EE+CSICLTEF R  DSVCKLP+C H+FHF+CI++W +RNRFTCPL
Sbjct: 61  RYEELQRSDDRTEEEEMCSICLTEFARE-DSVCKLPDCAHVFHFDCIEKWHERNRFTCPL 120

Query: 121 CRCFFFFEDNRKMDTKWSFLVPDNPSSLYYFLQ 145
           CRCFF  E +   + K  F+VPDNPSSLYYFLQ
Sbjct: 121 CRCFFNIEKHH--ERKLRFVVPDNPSSLYYFLQ 149

[Close]

BLAST of CsGy6G009610 vs. NCBI nr
Match: KAG7010790.1 (RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 171 bits (432), Expect = 1.65e-51
Identity = 90/153 (58.82%), Postives = 111/153 (72.55%), Query Frame = 0


Query: 1   MLGLFWLLSPMRFPILFFNTFLWIPLFRINQAILGVVATVFGLPSSPEHGTD---LLVVR 60
           MLGL +L S +   I+FFNTF+WIPLFR+ +AILG +A+VF L S PE  +     L+VR
Sbjct: 1   MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILG-IASVFRLASLPEMDSSRGGTLLVR 60

Query: 61  SYDE-----DGGSSEEICSICLTEFGRSGDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPL 120
            Y+E     D    EE+CSICLTEF R  DSVCKLP+C H+FHF+CI++W +RNRFTCPL
Sbjct: 61  RYEELQRSDDRTEEEEMCSICLTEFARE-DSVCKLPDCAHVFHFDCIEKWHERNRFTCPL 120

Query: 121 CRCFFFFEDNRKMDTKWSFLVPDNPSSLYYFLQ 145
           CRCFF  E +   + K  F+VPDNPSSLYYFLQ
Sbjct: 121 CRCFFNIEKHH--EKKLRFVVPDNPSSLYYFLQ 149

[Close]

BLAST of CsGy6G009610 vs. ExPASy TrEMBL
Match: A0A0A0KFW5 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G117180 PE=4 SV=1)

HSP 1 Score: 292 bits (748), Expect = 3.57e-100
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 11  MRFPILFFNTFLWIPLFRINQAILGVVATVFGLPSSPEHGTDLLVVRSYDEDGGSSEEIC 70
           MRFPILFFNTFLWIPLFRINQAILGVVATVFGLPSSPEHGTDLLVVRSYDEDGGSSEEIC
Sbjct: 1   MRFPILFFNTFLWIPLFRINQAILGVVATVFGLPSSPEHGTDLLVVRSYDEDGGSSEEIC 60

Query: 71  SICLTEFGRSGDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCRCFFFFEDNRKMDTKWS 130
           SICLTEFGRSGDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCRCFFFFEDNRKMDTKWS
Sbjct: 61  SICLTEFGRSGDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCRCFFFFEDNRKMDTKWS 120

Query: 131 FLVPDNPSSLYYFLQ 145
           FLVPDNPSSLYYFLQ
Sbjct: 121 FLVPDNPSSLYYFLQ 135

[Close]

BLAST of CsGy6G009610 vs. ExPASy TrEMBL
Match: A0A5A7TXY0 (RING-H2 finger protein ATL18-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00410 PE=4 SV=1)

HSP 1 Score: 279 bits (713), Expect = 1.09e-94
Identity = 133/146 (91.10%), Postives = 139/146 (95.21%), Query Frame = 0


Query: 1   MLGLFWLLSPMRFPILFFNTFLWIPLFRINQAILGVVATVFGLPSSPEHGTDLLVVRSYD 60
           MLGLF+L+SPMRFPILFF+TFLWIPLFR+ QAILGVVATVFGLPSSP+HGTDL+VVRSYD
Sbjct: 1   MLGLFYLVSPMRFPILFFSTFLWIPLFRMKQAILGVVATVFGLPSSPQHGTDLVVVRSYD 60

Query: 61  ED-GGSSEEICSICLTEFGRSGDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCRCFFFF 120
           ED GGSSEEICSICLTEFGRS DSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCRC FF 
Sbjct: 61  EDHGGSSEEICSICLTEFGRSEDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCRC-FFL 120

Query: 121 EDNRKMDTKWSFLVPDNPSSLYYFLQ 145
           EDN KMDTKW FLVPDNPSSLYYFLQ
Sbjct: 121 EDNHKMDTKWRFLVPDNPSSLYYFLQ 145

[Close]

BLAST of CsGy6G009610 vs. ExPASy TrEMBL
Match: A0A5D3BPT9 (RING-H2 finger protein ATL18-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00740 PE=4 SV=1)

HSP 1 Score: 276 bits (707), Expect = 8.99e-94
Identity = 132/146 (90.41%), Postives = 138/146 (94.52%), Query Frame = 0


Query: 1   MLGLFWLLSPMRFPILFFNTFLWIPLFRINQAILGVVATVFGLPSSPEHGTDLLVVRSYD 60
           MLGLF+L+SPMRFPILFF+TFLWIPLFR+ QAILGVVATVFG PSSP+HGTDL+VVRSYD
Sbjct: 1   MLGLFYLVSPMRFPILFFSTFLWIPLFRMKQAILGVVATVFGRPSSPQHGTDLVVVRSYD 60

Query: 61  ED-GGSSEEICSICLTEFGRSGDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCRCFFFF 120
           ED GGSSEEICSICLTEFGRS DSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCRC FF 
Sbjct: 61  EDHGGSSEEICSICLTEFGRSEDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCRC-FFL 120

Query: 121 EDNRKMDTKWSFLVPDNPSSLYYFLQ 145
           EDN KMDTKW FLVPDNPSSLYYFLQ
Sbjct: 121 EDNHKMDTKWRFLVPDNPSSLYYFLQ 145

[Close]

BLAST of CsGy6G009610 vs. ExPASy TrEMBL
Match: A0A6J1FTE6 (RING-H2 finger protein ATL18-like OS=Cucurbita moschata OX=3662 GN=LOC111448616 PE=4 SV=1)

HSP 1 Score: 171 bits (434), Expect = 3.98e-52
Identity = 91/153 (59.48%), Postives = 111/153 (72.55%), Query Frame = 0


Query: 1   MLGLFWLLSPMRFPILFFNTFLWIPLFRINQAILGVVATVFGLPSSPEHGTD---LLVVR 60
           MLGL +L S +   I+FFNTF+WIPLFR+ +AILG VA+VF L S PE  +     L+VR
Sbjct: 1   MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILG-VASVFRLVSLPEMDSSRGGTLLVR 60

Query: 61  SYDE-----DGGSSEEICSICLTEFGRSGDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPL 120
            Y+E     D    EE+CSICLTEF R  DSVCKLP+C H+FHF+CI++W +RNRFTCPL
Sbjct: 61  RYEELQRSDDRAEEEEMCSICLTEFARE-DSVCKLPDCAHVFHFDCIEKWHERNRFTCPL 120

Query: 121 CRCFFFFEDNRKMDTKWSFLVPDNPSSLYYFLQ 145
           CRCFF  E +   + K  F+VPDNPSSLYYFLQ
Sbjct: 121 CRCFFNIEKHH--EKKLRFVVPDNPSSLYYFLQ 149

[Close]

BLAST of CsGy6G009610 vs. ExPASy TrEMBL
Match: A0A6J1G855 (E3 ubiquitin-protein ligase ATL41-like OS=Cucurbita moschata OX=3662 GN=LOC111451622 PE=4 SV=1)

HSP 1 Score: 160 bits (405), Expect = 1.14e-46
Identity = 79/136 (58.09%), Postives = 97/136 (71.32%), Query Frame = 0


Query: 17  FFNTFLWIPLFRINQAILGVVATVFGL---PSSPEHGTDLLVVRSYDE----DGGSSEEI 76
           FFNT++WIPL R+  AI+G V+ VF L   P S       L+VR Y+E    D  + EEI
Sbjct: 96  FFNTYVWIPLLRLKDAIIGGVS-VFRLAFVPESDGSSGGTLLVRRYEELQRSDDRAEEEI 155

Query: 77  CSICLTEFGRSGDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCRCFFFFEDNRKMDTKW 136
           CSICL EF R GDSVC LP+C H+FHF+CI++W++RNRFTCPLCRCFFFF    + + K 
Sbjct: 156 CSICLMEFAR-GDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFFFNIRNRHERKL 215

Query: 137 SFLVPDNPSSLYYFLQ 145
            F+VPDNPS LYYFLQ
Sbjct: 216 QFVVPDNPSCLYYFLQ 229

[Close]

BLAST of CsGy6G009610 vs. TAIR 10
Match: AT4G38140.1 (RING/U-box superfamily protein )

HSP 1 Score: 66.6 bits (161), Expect = 1.9e-11
Identity = 43/117 (36.75%), Postives = 61/117 (52.14%), Query Frame = 0


Query: 1   MLGLFWLLSPMRFPILFFNTFLWIPLFRINQAILGVVATVFGLPSSPEHGTDLLVVRSYD 60
           M+ + +  SP+    + F T + IPL R+ +             +  + G +L+ V   D
Sbjct: 1   MISMLFPRSPLCTAAIVFYTCVCIPLGRLKK-------NGGDADAHDDDGYNLVGVMFGD 60

Query: 61  EDGGSSEEI-CSICLTEFGRSGDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCRCF 117
           ++    EEI C ICL EF  + D+V  LP C HLFH NCI+ W+ R   TCPLCR F
Sbjct: 61  KE--KEEEICCPICLVEF-EAEDAVTHLPRCAHLFHINCIEPWLLRGHLTCPLCRSF 107

[Close]

BLAST of CsGy6G009610 vs. TAIR 10
Match: AT5G37250.1 (RING/U-box superfamily protein )

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-10
Identity = 31/60 (51.67%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 63  GGSSEEICSICLTEFGRS-GDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCRCFFFFED 122
           G   E  CSICL +F  S  D++  LP+C HLFH NCI EW+ R R +CPLCR   + ED
Sbjct: 130 GDEEETTCSICLEDFSESHDDNIILLPDCFHLFHQNCIFEWLKRQR-SCPLCRRVPYEED 188

[Close]

BLAST of CsGy6G009610 vs. TAIR 10
Match: AT5G37270.1 (RING/U-box superfamily protein )

HSP 1 Score: 62.0 bits (149), Expect = 4.6e-10
Identity = 30/60 (50.00%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 63  GGSSEEICSICLTEFGRS-GDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCRCFFFFED 122
           G   E  CSICL +F  S  D++  LP+C HLFH +CI EW+ R R +CPLCR   + ED
Sbjct: 146 GDEEETTCSICLEDFSESHDDNIILLPDCFHLFHQSCIFEWLKRQR-SCPLCRRVPYEED 204

[Close]

BLAST of CsGy6G009610 vs. TAIR 10
Match: AT4G11360.1 (RING-H2 finger A1B )

HSP 1 Score: 61.2 bits (147), Expect = 7.8e-10
Identity = 30/84 (35.71%), Postives = 47/84 (55.95%), Query Frame = 0


Query: 39  TVFGLPSSPEHGTDLLVVRSYDEDGGSSEEICSICLTEFGRSGDSVCKLPNCEHLFHFNC 98
           T   L +S     +L+ V  + +     E+ C++CL++F  S D + +LP C H+FH  C
Sbjct: 54  TRLALSTSATLANELIPVVRFSDLLTDPEDCCTVCLSDF-VSDDKIRQLPKCGHVFHHRC 113

Query: 99  IQEWI-DRNRFTCPLCRCFFFFED 122
           +  WI D N+ TCP+CR  F  E+
Sbjct: 114 LDRWIVDCNKITCPICRNRFLPEE 136

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BLAST of CsGy6G009610 vs. TAIR 10
Match: AT5G43200.1 (Zinc finger, C3HC4 type (RING finger) family protein )

HSP 1 Score: 60.8 bits (146), Expect = 1.0e-09
Identity = 29/68 (42.65%), Postives = 37/68 (54.41%), Query Frame = 0


Query: 47  PEHGTDLLVVRSYDEDGGSSEEICSICLTEFGRSGDSVCKLPNCEHLFHFNCIQEWIDRN 106
           P   TDL    S  E+     + C+ICL E   S D  C+LPNC H FH  C+ +W+ R 
Sbjct: 135 PPLATDLDQEMSQGEE--EESKTCAICLEELSTS-DDYCELPNCTHCFHEPCLTQWLIRG 194

Query: 107 RFTCPLCR 115
             +CPLCR
Sbjct: 195 NNSCPLCR 199

The following BLAST results are available for this feature:

BLAST of CsGy6G009610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZL4	2.6e-10	36.75	RING-H2 finger protein ATL18 OS=Arabidopsis thaliana OX=3702 GN=ATL18 PE=2 SV=1	[more]
Q9SUS5	1.1e-08	35.71	E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana OX=3702 GN=RHA1B PE=2 ...	[more]
Q9SUS4	3.2e-08	31.58	Probable E3 ubiquitin-protein ligase RHA1A OS=Arabidopsis thaliana OX=3702 GN=RH...	[more]
Q8GW38	9.3e-08	45.59	RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1	[more]
Q9XF92	2.1e-07	37.68	Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH...	[more]

BLAST of CsGy6G009610 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047798.1	2.26e-94	91.10	RING-H2 finger protein ATL18-like [Cucumis melo var. makuwa]	[more]
TYK01060.1	1.86e-93	90.41	RING-H2 finger protein ATL18-like [Cucumis melo var. makuwa]	[more]
XP_022944066.1	8.21e-52	59.48	RING-H2 finger protein ATL18-like [Cucurbita moschata] >KAG6570951.1 RING-H2 fin...	[more]
XP_023512248.1	1.17e-51	59.48	RING-H2 finger protein ATL18-like [Cucurbita pepo subsp. pepo]	[more]
KAG7010790.1	1.65e-51	58.82	RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]

BLAST of CsGy6G009610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFW5	3.57e-100	100.00	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G117180 P...	[more]
A0A5A7TXY0	1.09e-94	91.10	RING-H2 finger protein ATL18-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BPT9	8.99e-94	90.41	RING-H2 finger protein ATL18-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A6J1FTE6	3.98e-52	59.48	RING-H2 finger protein ATL18-like OS=Cucurbita moschata OX=3662 GN=LOC111448616 ...	[more]
A0A6J1G855	1.14e-46	58.09	E3 ubiquitin-protein ligase ATL41-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]

BLAST of CsGy6G009610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G38140.1	1.9e-11	36.75	RING/U-box superfamily protein	[more]
AT5G37250.1	1.2e-10	51.67	RING/U-box superfamily protein	[more]
AT5G37270.1	4.6e-10	50.00	RING/U-box superfamily protein	[more]
AT4G11360.1	7.8e-10	35.71	RING-H2 finger A1B	[more]
AT5G43200.1	1.0e-09	42.65	Zinc finger, C3HC4 type (RING finger) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 70..113 e-value: 3.3E-6 score: 36.6
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 69..114 e-value: 1.0E-11 score: 45.0
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 70..114 score: 12.622055
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 51..120 e-value: 2.3E-16 score: 60.8
None	No IPR available	PANTHER	PTHR45969	RING ZINC FINGER PROTEIN-RELATED	coord: 9..118
None	No IPR available	PANTHER	PTHR45969:SF9	ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN	coord: 9..118
None	No IPR available	CDD	cd16448	RING-H2	coord: 70..114 e-value: 1.19141E-12 score: 56.6915
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 60..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G009610.2	CsGy6G009610.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane