CsGy6G007065 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G007065
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	60S ribosomal protein L23
Location	Gy14Chr6: 6073346 .. 6075987 (+)
RNA-Seq Expression	CsGy6G007065
Synteny	CsGy6G007065

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCTTCTGTTATAGCGGCCGCGGGAGAGAAGCCAAAATCCATCGACAATGTCGAAGCGAGGTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTAGTGCTTGTTCTTCAATGGCTTCTTGTTGGTCAAAATGAATTTACTCTGCTGTTGGTATCGTTTTATGAATCGTTGGAACTAATTTGGTTGCTATCACAGGTAGGGGAGGATCCGCTGGGAACAAGTTTCGGATGTCACTGGGTCTTCCAGTGGCTGCTACTGTCAACTGTGCAGACAACACGGGAGCTAAGAATCTCTACATCATTTCCGTGAAAGGGATCAAGGGTCGTCTTAATAGGTTGCCATCCGCATGTGTTGGTGATATGGTTATGGCTACTGTCAAGAAAGGCAAGCCTGATCTCAGGAAGAAGGTCTTGCCTGCTGTTATTGTTAGGCAGCGCAAGCCATGGCGCCGAAAGGATGGTGTTTTCATGTATTTCGAAGGTTTGCCTATTTTCATCCTTTCCCTATTTGGTTTTTTGGCGTTGTTGTTTGTTTCTGCTTCGTTGAATGGAGGAGGATCTTGTTTAACTTACTTGGGTGGGAAGTCGTTATGGGTGTTGAATTAGGACTATTTACGATACTAATTGTTGGGTTATCAGTGTTATCTGTGGGTTGAACTTGCAATTTCGTAACTGTAGCTTTCTCTTTGCTGTTCGTATGGTCGTTTATCTCATTACTGTGAAAATTTATTCAGAACTTGGCTGCCTCGTGTCATATTACTTCTCCATATGAAGGACTTATGGTTTGTTGTTCTTTTTTATTTTTTTATTAAAATAAGTTGTCCCCTTTTTTCCAATATATTTTAATGGTTATCCATTTGATTGACGAGCCTTATGTGTAAACGCCATTTTATGACTAGGGCAACCATTTTTCTTTCAGTATACGATAGCTTCTAGAATTTTTGAATTTGCTACACCTTGTAAGATTGTAGAAAGATGAATGTCTAAGTTTATGAGAAAGGATTGCTACTTCCTTTTATTTTGTAGTTTGATTGTGTATAATCTGGATCCCATTAGGATGGTTTATGTTCTTTTTCTGTATTCACAAACAATTCTCTCTTGAAAATTGGACGTGATTTTTTAATACGTTAATTGGGACTGTTCCATTGTAATTTGGAGGCTTTGTTTTTGTCCTTTTGAGATTTTAATATCTCTGAAATGTTGGCTGGGAAGTAACGCATTTTATCCCTTTTTGATCAAGAAGTTTGCTGGACAATTGATTGTGAAGTAGTAGTGAATAAGATGATTGTACTGGATTCAAATGTAAATTCTTTCCACTATAAACCATTACAACTTGTTGTTGTGTTTTTCTTACATATATCGTATTTTTTCTCTTTCAGATAATGCTGGTGTTATCGTCAATCCCAAGGGCGAAATGAAAGGTAATGTTTGTTTCTTTATTTATTTTTCACAGTATTATTTTTATACCAACGGGTGTTTAGGTCAACTTAGAATGTAATGGCTCTGTAAGCTAGTAGTATATGATGCCTTTAAATGTGTGACATGTCACATAAGATGCTAATTATTATGTAAGCCTTGAAATTTGACAAAGGCAATTCTGGGTGGAAAATTCGAAGCTTGCCTAGTAGTTTCCACTAACCAGTAGGTGCAGATTGTAAGAAGCAATGTGCACGTTGAAACATTATTTTTTGAAATCTAGAACATGCACACAGCAAGTTTAGTGTTTGATACATGTTCATCAAATGTTCGGAACATGCATTGGAGTGTGTCCAAGTGTTGGACATAGATACTAATAAAACTAAAGTACTAGCTGCCAGTTTTAACATTGATAACACCACATTATTGGTAAACAAAGAACGAATGGTCTTTCATGAAATCTGGACATCATTTATGGTGAACCGTTATGTTCTTGGGTTGGATAGCAACCCCTTCCCTATTTCAGAGATTAATGACGGTTGTGCATTTGATTACAGGTTCGGCAATTACTGGCCCCATCGGAAAGGAATGTGCTGATCTCTGGCCGAGGATTGCAAGTGCGGCGAATGCCATCGCATGAGAGCCAAAGCCATTATAGGGTCATGCCATGTTTTAGATTTTCTTCTAGTTTTCTTTTGGTTGGGTTTGCCTCTGCTTTGTTAGACACTGATGCAAGCTCATTTTTGAGTTCTCTTAATCTTACTGTATCGCTCAAGTTTAAATTGGTGTTGCCTTTTGCTCCTTTCTGTTTCATGAACTCTTGCAGTTTTTTCTATAGATACGAAGGTTGCATGTCTTATAACGTTAATATTTGAAGAAGCATTAGAAAGTTTTCGTCGTTCTTGCCTGCTCTTGTTGGGAAAGTTCCATTCTAAAATCAACCCATGAAGATTGATGAGAATATTATTATTATTTTTTTGAAATAATAGTTTATTGGTGGAATGTTTTTGAGGTTGAGGGTAGGTTAGGTGACATTTTCAGAAGAGGTTTTCGTCATTGATTGGTTGTGATGTAGTTATTTGAAAGTAGTAGGCTACACAAGCATTGAAATTGTTTCTATGAGTTCTATGAACTATTTGACTCATAGTGTGTTTGAACTTGTGAAAAATTATAGCGAAATACGAGAGATCAATTGAGCTATAATTCTCAAAATCAATTTACCCATC

mRNA sequence

TGCTTCTGTTATAGCGGCCGCGGGAGAGAAGCCAAAATCCATCGACAATGTCGAAGCGAGGTAGGGGAGGATCCGCTGGGAACAAGTTTCGGATGTCACTGGGTCTTCCAGTGGCTGCTACTGTCAACTGTGCAGACAACACGGGAGCTAAGAATCTCTACATCATTTCCGTGAAAGGGATCAAGGGTCGTCTTAATAGGTTGCCATCCGCATGTGTTGGTGATATGGTTATGGCTACTGTCAAGAAAGGCAAGCCTGATCTCAGGAAGAAGGTCTTGCCTGCTGTTATTGTTAGGCAGCGCAAGCCATGGCGCCGAAAGGATGGTGTTTTCATGTATTTCGAAGGTTTGCCTATTTTCATCCTTTCCCTATTTGGTTTTTTGGCGTTGTTGTTTGTTTCTGCTTCGTTGAATGGAGGAGGATCTTGTTTAACTTACTTGGGTGGGAAGTCGTTATGGGTGTTGAATTAGGACTATTTACGATACTAATTGTTGGGTTATCAGTGTTATCTGTGGGTTGAACTTGCAATTTCGTAACTGTAGCTTTCTCTTTGCTGTTCGTATGGTCGTTTATCTCATTACTGTGAAAATTTATTCAGAACTTGGCTGCCTCGTGTCATATTACTTCTCCATATGAAGGACTTATGGTTTGTTGTTCTTTTTTATTTTTTTATTAAAATAAGTTGTCCCCTTTTTTCCAATATATTTTAATGGTTATCCATTTGATTGACGAGCCTTATGTGTAAACGCCATTTTATGACTAGGGCAACCATTTTTCTTTCAGTATACGATAGCTTCTAGAATTTTTGAATTTGCTACACCTTGTAAGATTGTAGAAAGATGAATGTCTAAGTTTATGAGAAAGGATTGCTACTTCCTTTTATTTTGTAGTTTGATTGTGTATAATCTGGATCCCATTAGGATGGTTTATGTTCTTTTTCTGTATTCACAAACAATTCTCTCTTGAAAATTGGACGTGATTTTTTAATACGTTAATTGGGACTGTTCCATTGTAATTTGGAGGCTTTGTTTTTGTCCTTTTGAGATTTTAATATCTCTGAAATGTTGGCTGGGAAGTAACGCATTTTATCCCTTTTTGATCAAGAAGTTTGCTGGACAATTGATTGTGAAGTAGTAGTGAATAAGATGATTGTACTGGATTCAAATGTAAATTCTTTCCACTATAAACCATTACAACTTGTTGTTGTGTTTTTCTTACATATATCGTATTTTTTCTCTTTCAGATAATGCTGGTGTTATCGTCAATCCCAAGGGCGAAATGAAAGGTTCGGCAATTACTGGCCCCATCGGAAAGGAATGTGCTGATCTCTGGCCGAGGATTGCAAGTGCGGCGAATGCCATCGCATGAGAGCCAAAGCCATTATAGGGTCATGCCATGTTTTAGATTTTCTTCTAGTTTTCTTTTGGTTGGGTTTGCCTCTGCTTTGTTAGACACTGATGCAAGCTCATTTTTGAGTTCTCTTAATCTTACTGTATCGCTCAAGTTTAAATTGGTGTTGCCTTTTGCTCCTTTCTGTTTCATGAACTCTTGCAGTTTTTTCTATAGATACGAAGGTTGCATGTCTTATAACGTTAATATTTGAAGAAGCATTAGAAAGTTTTCGTCGTTCTTGCCTGCTCTTGTTGGGAAAGTTCCATTCTAAAATCAACCCATGAAGATTGATGAGAATATTATTATTATTTTTTTGAAATAATAGTTTATTGGTGGAATGTTTTTGAGGTTGAGGGTAGGTTAGGTGACATTTTCAGAAGAGGTTTTCGTCATTGATTGGTTGTGATGTAGTTATTTGAAAGTAGTAGGCTACACAAGCATTGAAATTGTTTCTATGAGTTCTATGAACTATTTGACTCATAGTGTGTTTGAACTTGTGAAAAATTATAGCGAAATACGAGAGATCAATTGAGCTATAATTCTCAAAATCAATTTACCCATC

Coding sequence (CDS)

ATGTCGAAGCGAGGTAGGGGAGGATCCGCTGGGAACAAGTTTCGGATGTCACTGGGTCTTCCAGTGGCTGCTACTGTCAACTGTGCAGACAACACGGGAGCTAAGAATCTCTACATCATTTCCGTGAAAGGGATCAAGGGTCGTCTTAATAGGTTGCCATCCGCATGTGTTGGTGATATGGTTATGGCTACTGTCAAGAAAGGCAAGCCTGATCTCAGGAAGAAGGTCTTGCCTGCTGTTATTGTTAGGCAGCGCAAGCCATGGCGCCGAAAGGATGGTGTTTTCATGTATTTCGAAGGTTTGCCTATTTTCATCCTTTCCCTATTTGGTTTTTTGGCGTTGTTGTTTGTTTCTGCTTCGTTGAATGGAGGAGGATCTTGTTTAACTTACTTGGGTGGGAAGTCGTTATGGGTGTTGAATTAG

Protein sequence

MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEGLPIFILSLFGFLALLFVSASLNGGGSCLTYLGGKSLWVLN*

Homology

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BLAST of CsGy6G007065 vs. ExPASy Swiss-Prot
Match: Q07760 (60S ribosomal protein L23 OS=Nicotiana tabacum OX=4097 GN=RPL23 PE=2 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 5.6e-50
Identity = 96/99 (96.97%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGSAGNKFRMSLGLPVAAT+NCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATINCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFE 100
           VMATVKKGKPDLRKKV+PAV+VRQRKPWRRKDGVFMYFE
Sbjct: 61  VMATVKKGKPDLRKKVMPAVVVRQRKPWRRKDGVFMYFE 99

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BLAST of CsGy6G007065 vs. ExPASy Swiss-Prot
Match: P49690 (60S ribosomal protein L23 OS=Arabidopsis thaliana OX=3702 GN=RPL23A PE=2 SV=3)

HSP 1 Score: 197.6 bits (501), Expect = 9.5e-50
Identity = 97/99 (97.98%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGG++GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFE 100
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFE
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFE 99

[Close]

BLAST of CsGy6G007065 vs. ExPASy Swiss-Prot
Match: Q9XEK8 (60S ribosomal protein L23 OS=Syntrichia ruralis OX=38588 GN=RPL23 PE=2 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.6e-44
Identity = 88/99 (88.89%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGS+GNKFRMSLGLPV A VNCADNTGAKNLY+IS  G++GRLNRLP+A VGDM
Sbjct: 1   MSKRGRGGSSGNKFRMSLGLPVGAVVNCADNTGAKNLYVIS-SGVRGRLNRLPAAAVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFE 100
           VMATVKKGKPDLRKKV+PAVIVRQRKPWRRKDGVFMYFE
Sbjct: 61  VMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFE 98

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BLAST of CsGy6G007065 vs. ExPASy Swiss-Prot
Match: Q6PC14 (60S ribosomal protein L23 OS=Danio rerio OX=7955 GN=rpl23 PE=2 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.5e-42
Identity = 85/99 (85.86%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGS+G KFR+SLGLPV A +NCADNTGAKNLYIISVKGIKGRLNRLPSA VGDM
Sbjct: 1   MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPSAGVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFE 100
           VMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFE
Sbjct: 61  VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFE 99

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BLAST of CsGy6G007065 vs. ExPASy Swiss-Prot
Match: Q3T057 (60S ribosomal protein L23 OS=Bos taurus OX=9913 GN=RPL23 PE=2 SV=2)

HSP 1 Score: 171.8 bits (434), Expect = 5.6e-42
Identity = 84/99 (84.85%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGS+G KFR+SLGLPV A +NCADNTGAKNLYIISVKGIKGRLNRLP+A VGDM
Sbjct: 1   MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFE 100
           VMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFE
Sbjct: 61  VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFE 99

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BLAST of CsGy6G007065 vs. NCBI nr
Match: KZN07895.1 (hypothetical protein DCAR_000564 [Daucus carota subsp. sativus])

HSP 1 Score: 206 bits (525), Expect = 3.58e-66
Identity = 101/104 (97.12%), Postives = 103/104 (99.04%), Query Frame = 0


Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEGLPIF 104
           VMATVKKGKPDLRKKV+PAVIVRQRKPWRRKDGVFMYFEG+ IF
Sbjct: 61  VMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEGIMIF 104

[Close]

BLAST of CsGy6G007065 vs. NCBI nr
Match: XP_015887784.1 (60S ribosomal protein L23 [Ziziphus jujuba])

HSP 1 Score: 206 bits (524), Expect = 8.03e-66
Identity = 102/108 (94.44%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEGLPIFILSL 108
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEG   F++ L
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEGCLFFLIFL 108

[Close]

BLAST of CsGy6G007065 vs. NCBI nr
Match: XP_030933959.1 (60S ribosomal protein L23 isoform X2 [Quercus lobata])

HSP 1 Score: 204 bits (520), Expect = 2.07e-65
Identity = 104/112 (92.86%), Postives = 106/112 (94.64%), Query Frame = 0


Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEGLPIFILSLFGFL 112
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEG+   +   FGFL
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEGINDIM---FGFL 109

[Close]

BLAST of CsGy6G007065 vs. NCBI nr
Match: TQE09579.1 (hypothetical protein C1H46_004798 [Malus baccata])

HSP 1 Score: 204 bits (518), Expect = 2.75e-65
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEG 100
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEG
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEG 100

[Close]

BLAST of CsGy6G007065 vs. NCBI nr
Match: KAF5465864.1 (hypothetical protein F2P56_015831 [Juglans regia])

HSP 1 Score: 204 bits (518), Expect = 3.03e-65
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEG 100
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEG
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEG 100

[Close]

BLAST of CsGy6G007065 vs. ExPASy TrEMBL
Match: A0A166FKP1 (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_000564 PE=3 SV=1)

HSP 1 Score: 206 bits (525), Expect = 1.73e-66
Identity = 101/104 (97.12%), Postives = 103/104 (99.04%), Query Frame = 0


Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEGLPIF 104
           VMATVKKGKPDLRKKV+PAVIVRQRKPWRRKDGVFMYFEG+ IF
Sbjct: 61  VMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEGIMIF 104

[Close]

BLAST of CsGy6G007065 vs. ExPASy TrEMBL
Match: A0A6P4A2P7 (60S ribosomal protein L23 OS=Ziziphus jujuba OX=326968 GN=LOC107422800 PE=3 SV=1)

HSP 1 Score: 206 bits (524), Expect = 3.89e-66
Identity = 102/108 (94.44%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEGLPIFILSL 108
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEG   F++ L
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEGCLFFLIFL 108

[Close]

BLAST of CsGy6G007065 vs. ExPASy TrEMBL
Match: A0A7N0TEW3 (Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=3 SV=1)

HSP 1 Score: 206 bits (523), Expect = 4.84e-66
Identity = 100/105 (95.24%), Postives = 103/105 (98.10%), Query Frame = 0


Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEGLPIFI 105
           VMATVKKGKPDLRKKV+PAVIVRQRKPWRRKDGVFMYFE + +FI
Sbjct: 61  VMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEAIAVFI 105

[Close]

BLAST of CsGy6G007065 vs. ExPASy TrEMBL
Match: A0A540NEW8 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_004798 PE=3 SV=1)

HSP 1 Score: 204 bits (518), Expect = 1.33e-65
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEG 100
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEG
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEG 100

[Close]

BLAST of CsGy6G007065 vs. ExPASy TrEMBL
Match: A0A6J5TFT6 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS818 PE=3 SV=1)

HSP 1 Score: 204 bits (519), Expect = 1.79e-65
Identity = 101/103 (98.06%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEGLPI 103
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEG  I
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEGSAI 103

[Close]

BLAST of CsGy6G007065 vs. TAIR 10
Match: AT1G04480.1 (Ribosomal protein L14p/L23e family protein )

HSP 1 Score: 197.6 bits (501), Expect = 6.7e-51
Identity = 97/99 (97.98%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGG++GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFE 100
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFE
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFE 99

[Close]

BLAST of CsGy6G007065 vs. TAIR 10
Match: AT2G33370.1 (Ribosomal protein L14p/L23e family protein )

HSP 1 Score: 197.6 bits (501), Expect = 6.7e-51
Identity = 97/99 (97.98%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGG++GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFE 100
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFE
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFE 99

[Close]

BLAST of CsGy6G007065 vs. TAIR 10
Match: AT3G04400.1 (Ribosomal protein L14p/L23e family protein )

HSP 1 Score: 197.6 bits (501), Expect = 6.7e-51
Identity = 97/99 (97.98%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGG++GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM
Sbjct: 1   MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFE 100
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFE
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFE 99

[Close]

BLAST of CsGy6G007065 vs. TAIR 10
Match: AT3G04400.2 (Ribosomal protein L14p/L23e family protein )

HSP 1 Score: 171.8 bits (434), Expect = 4.0e-43
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 16  MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK 75
           MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK
Sbjct: 1   MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK 60

Query: 76  VLPAVIVRQRKPWRRKDGVFMYFE 100
           VLPAVIVRQRKPWRRKDGVFMYFE
Sbjct: 61  VLPAVIVRQRKPWRRKDGVFMYFE 84

[Close]

BLAST of CsGy6G007065 vs. TAIR 10
Match: ATCG00780.1 (ribosomal protein L14 )

HSP 1 Score: 43.5 bits (101), Expect = 1.6e-04
Identity = 26/77 (33.77%), Postives = 44/77 (57.14%), Query Frame = 0


Query: 26  VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVLPAVIV 85
           +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P+    R +V+ AVIV
Sbjct: 8   LNVADNSGARELMCIRIIGASNR----RYAHIGDVIVAVIKEAIPNTPLERSEVIRAVIV 67

Query: 86  RQRKPWRRKDGVFMYFE 100
           R  K  +R +G  + ++
Sbjct: 68  RTCKELKRNNGTIIRYD 80

The following BLAST results are available for this feature:

BLAST of CsGy6G007065 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q07760	5.6e-50	96.97	60S ribosomal protein L23 OS=Nicotiana tabacum OX=4097 GN=RPL23 PE=2 SV=1	[more]
P49690	9.5e-50	97.98	60S ribosomal protein L23 OS=Arabidopsis thaliana OX=3702 GN=RPL23A PE=2 SV=3	[more]
Q9XEK8	1.6e-44	88.89	60S ribosomal protein L23 OS=Syntrichia ruralis OX=38588 GN=RPL23 PE=2 SV=1	[more]
Q6PC14	2.5e-42	85.86	60S ribosomal protein L23 OS=Danio rerio OX=7955 GN=rpl23 PE=2 SV=1	[more]
Q3T057	5.6e-42	84.85	60S ribosomal protein L23 OS=Bos taurus OX=9913 GN=RPL23 PE=2 SV=2	[more]

BLAST of CsGy6G007065 vs. NCBI nr


Match Name	E-value	Identity	Description
KZN07895.1	3.58e-66	97.12	hypothetical protein DCAR_000564 [Daucus carota subsp. sativus]	[more]
XP_015887784.1	8.03e-66	94.44	60S ribosomal protein L23 [Ziziphus jujuba]	[more]
XP_030933959.1	2.07e-65	92.86	60S ribosomal protein L23 isoform X2 [Quercus lobata]	[more]
TQE09579.1	2.75e-65	100.00	hypothetical protein C1H46_004798 [Malus baccata]	[more]
KAF5465864.1	3.03e-65	100.00	hypothetical protein F2P56_015831 [Juglans regia]	[more]

BLAST of CsGy6G007065 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A166FKP1	1.73e-66	97.12	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_000564 ...	[more]
A0A6P4A2P7	3.89e-66	94.44	60S ribosomal protein L23 OS=Ziziphus jujuba OX=326968 GN=LOC107422800 PE=3 SV=1	[more]
A0A7N0TEW3	4.84e-66	95.24	Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=3 SV=1	[more]
A0A540NEW8	1.33e-65	100.00	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_004798 PE=3 SV=1	[more]
A0A6J5TFT6	1.79e-65	98.06	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS818 PE=3 SV=...	[more]

BLAST of CsGy6G007065 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04480.1	6.7e-51	97.98	Ribosomal protein L14p/L23e family protein	[more]
AT2G33370.1	6.7e-51	97.98	Ribosomal protein L14p/L23e family protein	[more]
AT3G04400.1	6.7e-51	97.98	Ribosomal protein L14p/L23e family protein	[more]
AT3G04400.2	4.0e-43	100.00	Ribosomal protein L14p/L23e family protein	[more]
ATCG00780.1	1.6e-04	33.77	ribosomal protein L14	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000218	Ribosomal protein L14P	SMART	SM01374	Ribosomal_L14_2	coord: 19..117 e-value: 1.3E-24 score: 97.8
IPR000218	Ribosomal protein L14P	PFAM	PF00238	Ribosomal_L14	coord: 22..100 e-value: 2.4E-20 score: 72.7
IPR000218	Ribosomal protein L14P	PANTHER	PTHR11761	50S/60S RIBOSOMAL PROTEIN L14/L23	coord: 1..107
IPR000218	Ribosomal protein L14P	HAMAP	MF_01367	Ribosomal_L14	coord: 19..136 score: 12.603337
IPR036853	Ribosomal protein L14 superfamily	GENE3D	2.40.150.20	Ribosomal protein L14	coord: 1..108 e-value: 1.8E-36 score: 126.8
IPR036853	Ribosomal protein L14 superfamily	SUPERFAMILY	50193	Ribosomal protein L14	coord: 11..100
None	No IPR available	PANTHER	PTHR11761:SF19	60S RIBOSOMAL PROTEIN L23	coord: 1..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G007065.1	CsGy6G007065.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome