CsGy6G006990 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G006990
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Photosystem II reaction center Psb28 protein
Location	Gy14Chr6: 6029613 .. 6030370 (-)
RNA-Seq Expression	CsGy6G006990
Synteny	CsGy6G006990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCATCTTCTTCTTCTTCTTCTTCATTCTTCCCCTGTTTCCAATTCTCAACAACATCAATGGCGTCTCTTCAATCTCTGGCCTCCACTACTTCCCCGTCTTCTCCTCATCTCCTTCATCCCTCTTCCACCAAACCCAAACTCTCTTACTCTCTCCACAGCAGCGCCTTCTCCTCATTCCACGGCCGCTCTCTTTCCCTCTCCACCACCAAATGCCACACACTCACTCGCCGCACTTACCGACAACGTTCATGGAACCCCATCCTCATGGTTCTGCCCAAGATTCAGTTCATCCAGGGCACGGACGAGCAGACAATCCCGGATGTGCGGCTGACGAAATCCCGAGACGGAACCAATGGAATGGCGATTTTTAGGTTCGAGCAGCCGTCAGTGTTCGATTCATCGGCGGAGGTTGGGGATATCACCGGCTTCTATATGATTGATGAAGAAGGGATGATTCAATCGGTTGATGTGAATGCGAAGTTCATAAATGGGAAACCGGCGGGGATTGAGGCGAAGTATGTGATGAGAACCCCGAGGGAATGGGATAGATTCATGAGATTCATGGAGCGATACTCCAATGCCAATGGGATGCAATTTGTCAAGAAATGAAATCAGGTTTTTTCTTTTGCACAATTTTGTTTTTGCGTTTGAAAATGAAGATCAATACTGTGTTGATTATGGCTGATGGATGAAGATTTAATTGAAGCTTTGTTCTATGTTCTTTCTATCCCCCTAAAGGGAATTTGTAATAACAAAC

mRNA sequence

ATCATCTTCTTCTTCTTCTTCTTCATTCTTCCCCTGTTTCCAATTCTCAACAACATCAATGGCGTCTCTTCAATCTCTGGCCTCCACTACTTCCCCGTCTTCTCCTCATCTCCTTCATCCCTCTTCCACCAAACCCAAACTCTCTTACTCTCTCCACAGCAGCGCCTTCTCCTCATTCCACGGCCGCTCTCTTTCCCTCTCCACCACCAAATGCCACACACTCACTCGCCGCACTTACCGACAACGTTCATGGAACCCCATCCTCATGGTTCTGCCCAAGATTCAGTTCATCCAGGGCACGGACGAGCAGACAATCCCGGATGTGCGGCTGACGAAATCCCGAGACGGAACCAATGGAATGGCGATTTTTAGGTTCGAGCAGCCGTCAGTGTTCGATTCATCGGCGGAGGTTGGGGATATCACCGGCTTCTATATGATTGATGAAGAAGGGATGATTCAATCGGTTGATGTGAATGCGAAGTTCATAAATGGGAAACCGGCGGGGATTGAGGCGAAGTATGTGATGAGAACCCCGAGGGAATGGGATAGATTCATGAGATTCATGGAGCGATACTCCAATGCCAATGGGATGCAATTTGTCAAGAAATGAAATCAGGTTTTTTCTTTTGCACAATTTTGTTTTTGCGTTTGAAAATGAAGATCAATACTGTGTTGATTATGGCTGATGGATGAAGATTTAATTGAAGCTTTGTTCTATGTTCTTTCTATCCCCCTAAAGGGAATTTGTAATAACAAAC

Coding sequence (CDS)

ATGGCGTCTCTTCAATCTCTGGCCTCCACTACTTCCCCGTCTTCTCCTCATCTCCTTCATCCCTCTTCCACCAAACCCAAACTCTCTTACTCTCTCCACAGCAGCGCCTTCTCCTCATTCCACGGCCGCTCTCTTTCCCTCTCCACCACCAAATGCCACACACTCACTCGCCGCACTTACCGACAACGTTCATGGAACCCCATCCTCATGGTTCTGCCCAAGATTCAGTTCATCCAGGGCACGGACGAGCAGACAATCCCGGATGTGCGGCTGACGAAATCCCGAGACGGAACCAATGGAATGGCGATTTTTAGGTTCGAGCAGCCGTCAGTGTTCGATTCATCGGCGGAGGTTGGGGATATCACCGGCTTCTATATGATTGATGAAGAAGGGATGATTCAATCGGTTGATGTGAATGCGAAGTTCATAAATGGGAAACCGGCGGGGATTGAGGCGAAGTATGTGATGAGAACCCCGAGGGAATGGGATAGATTCATGAGATTCATGGAGCGATACTCCAATGCCAATGGGATGCAATTTGTCAAGAAATGA

Protein sequence

MASLQSLASTTSPSSPHLLHPSSTKPKLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTYRQRSWNPILMVLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSAEVGDITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGMQFVKK*

Homology

[Close]

BLAST of CsGy6G006990 vs. ExPASy Swiss-Prot
Match: Q0JG75 (Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PSB28 PE=2 SV=2)

HSP 1 Score: 210.7 bits (535), Expect = 1.4e-53
Identity = 120/188 (63.83%), Postives = 139/188 (73.94%), Query Frame = 0


Query: 1   MASLQSLASTTSPSSPHLLH---PSSTKPKLSYSLHSSAFSSFHGRSLSLSTTKCHTLTR 60
           MA++    +  SP S        P+ +    S SLH    SSF G SL    TK  +L  
Sbjct: 1   MAAVMKALAVASPISARAQPRRCPAGSSGGPSQSLH----SSFGGVSLQCRRTKPASL-- 60

Query: 61  RTYRQRSWNPILMVL--PKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSS 120
             +R R    ++M+   P IQFIQGTDEQTIPDVRLTKSRDGTNG+AIF F+QPSVFDSS
Sbjct: 61  --HRSRPSMQVVMMAARPAIQFIQGTDEQTIPDVRLTKSRDGTNGVAIFTFDQPSVFDSS 120

Query: 121 AEVGDITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 180
           AE+GDITGFYMID+EG++QSVDV+AKF+NGKPA IEAKYVMRTPREWDRFMRFMERYS A
Sbjct: 121 AELGDITGFYMIDDEGVLQSVDVSAKFVNGKPALIEAKYVMRTPREWDRFMRFMERYSQA 180

Query: 181 NGMQFVKK 184
           NG+QFVKK
Sbjct: 181 NGLQFVKK 180

[Close]

BLAST of CsGy6G006990 vs. ExPASy Swiss-Prot
Match: Q8W0Y8 (Photosystem II reaction center PSB28 protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB28 PE=2 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 8.0e-49
Identity = 107/186 (57.53%), Postives = 133/186 (71.51%), Query Frame = 0


Query: 1   MASLQSLASTTSPSSPHLLHPSSTKPKLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 60
           MA ++S+ S TS +      P S     S S+     SSF G  +SL   +  + T    
Sbjct: 1   MACVRSIGSLTSVNHSQRNVPRSGIVLSSCSVLPIKSSSFTGSPVSLPRAQPSSRT---- 60

Query: 61  RQRSWNPI---LMVLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSAE 120
             R   P+   +MV P +QFIQGTDE TIPDV+LT+SRDG+NGMA+F F+QPSVFDSS E
Sbjct: 61  ALRPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSSGE 120

Query: 121 VGDITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG 180
           VG+ITG YMIDEEG+IQS DVNA+F+NGKP GI AK++MR+P+EWDRFMRFMERYS+ NG
Sbjct: 121 VGEITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMERYSDQNG 180

Query: 181 MQFVKK 184
           +QFVKK
Sbjct: 181 LQFVKK 182

[Close]

BLAST of CsGy6G006990 vs. ExPASy Swiss-Prot
Match: P49508 (Photosystem II reaction center Psb28 protein OS=Trieres chinensis OX=1514140 GN=psb28 PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.9e-35
Identity = 66/110 (60.00%), Postives = 89/110 (80.91%), Query Frame = 0


Query: 74  KIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFD-SSAEVGDITGFYMIDEEGM 133
           KIQFI+G DE+ +PDVRLT+SRDG+ G A FRF+ P++ D S+A+ G+ITG Y+ID+EG 
Sbjct: 4   KIQFIKGLDEKVLPDVRLTRSRDGSTGTATFRFKNPNILDKSTAKEGEITGMYLIDQEGT 63

Query: 134 IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGMQFVK 183
           +++ DVNA+FINGKP  IE+ Y+M++P  WDRFMRFMERY  +NG+ F K
Sbjct: 64  LETRDVNAQFINGKPEAIESIYIMKSPEAWDRFMRFMERYGESNGLVFTK 113

[Close]

BLAST of CsGy6G006990 vs. ExPASy Swiss-Prot
Match: A0T0H5 (Photosystem II reaction center Psb28 protein OS=Phaeodactylum tricornutum (strain CCAP 1055/1) OX=556484 GN=psb28 PE=3 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.1e-34
Identity = 64/110 (58.18%), Postives = 89/110 (80.91%), Query Frame = 0


Query: 74  KIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFD-SSAEVGDITGFYMIDEEGM 133
           KIQFI+G DE+ +PDVRLT+S+DG+ G A FRF+ P++ D ++A+ G+ITG Y+IDEEG+
Sbjct: 4   KIQFIKGLDEKVLPDVRLTRSKDGSTGTATFRFKNPNILDKTTAKEGEITGMYLIDEEGI 63

Query: 134 IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGMQFVK 183
           +++ DVNA+F+NGKP  IE+ Y+M++P  WDRFMRFMERY   NG+ F K
Sbjct: 64  LETRDVNARFVNGKPEAIESIYIMKSPEAWDRFMRFMERYGETNGLVFSK 113

[Close]

BLAST of CsGy6G006990 vs. ExPASy Swiss-Prot
Match: O78418 (Photosystem II reaction center Psb28 protein OS=Guillardia theta OX=55529 GN=psb28 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.9e-34
Identity = 67/109 (61.47%), Postives = 84/109 (77.06%), Query Frame = 0


Query: 75  IQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSAEV-GDITGFYMIDEEGMI 134
           IQFIQG +E  IPDVRLT+SRDG+ G A FRF  P V ++ + V G+ITG Y+IDEEG +
Sbjct: 4   IQFIQGVNEDVIPDVRLTRSRDGSTGTATFRFANPKVLEAQSSVKGNITGMYLIDEEGQL 63

Query: 135 QSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGMQFVK 183
            + DVNA+F+NGKP GIEA Y+M++  +WDRFMRFMERYS  NG+ F K
Sbjct: 64  VTRDVNARFVNGKPQGIEAVYIMQSKEDWDRFMRFMERYSEDNGLSFTK 112

[Close]

BLAST of CsGy6G006990 vs. NCBI nr
Match: XP_011656766.1 (photosystem II reaction center PSB28 protein, chloroplastic [Cucumis sativus])

HSP 1 Score: 362 bits (929), Expect = 2.10e-125
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MASLQSLASTTSPSSPHLLHPSSTKPKLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 60
           MASLQSLASTTSPSSPHLLHPSSTKPKLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY
Sbjct: 44  MASLQSLASTTSPSSPHLLHPSSTKPKLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 103

Query: 61  RQRSWNPILMVLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSAEVGD 120
           RQRSWNPILMVLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSAEVGD
Sbjct: 104 RQRSWNPILMVLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSAEVGD 163

Query: 121 ITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGMQF 180
           ITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGMQF
Sbjct: 164 ITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGMQF 223

Query: 181 VKK 183
           VKK
Sbjct: 224 VKK 226

[Close]

BLAST of CsGy6G006990 vs. NCBI nr
Match: XP_008459971.1 (PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic [Cucumis melo] >KAA0039893.1 photosystem II reaction center PSB28 protein [Cucumis melo var. makuwa] >TYK24609.1 photosystem II reaction center PSB28 protein [Cucumis melo var. makuwa])

HSP 1 Score: 348 bits (894), Expect = 9.97e-121
Identity = 175/183 (95.63%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 1   MASLQSLASTTSPSSPHLLHPSSTKPKLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 60
           MASLQSLASTTSPSSPHLLHPSSTK +LSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY
Sbjct: 1   MASLQSLASTTSPSSPHLLHPSSTKLRLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 60

Query: 61  RQRSWNPILMVLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSAEVGD 120
           RQR WNPILMV PKIQFIQGTDEQT+PDVRLTKSRDGTNGMAIFRF+QPSVFDSSAEVGD
Sbjct: 61  RQRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEVGD 120

Query: 121 ITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGMQF 180
           ITGFYMIDEEG+IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG+QF
Sbjct: 121 ITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQF 180

Query: 181 VKK 183
           VKK
Sbjct: 181 VKK 183

[Close]

BLAST of CsGy6G006990 vs. NCBI nr
Match: XP_022991617.1 (photosystem II reaction center PSB28 protein, chloroplastic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 288 bits (737), Expect = 3.34e-96
Identity = 154/188 (81.91%), Postives = 167/188 (88.83%), Query Frame = 0


Query: 1   MASLQSLASTTSPSSPHLLHPSSTKPKLSYS---LHSSAFSSFHGRSLSLSTTKCHTLTR 60
           MA+LQSLAST S SSPHL HPSST  K +++   LHSSAFS+FHGRSL++S  KC T+TR
Sbjct: 37  MATLQSLAST-SLSSPHLHHPSSTNTKAAFASARLHSSAFSAFHGRSLNVSGGKCQTVTR 96

Query: 61  RTYRQ--RSWNPILMVLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSS 120
           R  +   R  N ILMVLPKIQFIQGTDEQT+PDVRLTKSRDGTNGMAIF+FEQPSVFDSS
Sbjct: 97  RRCKPHGRLSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSS 156

Query: 121 AEVGDITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 180
            EVGDITGFYMIDEEG+IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA
Sbjct: 157 GEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 216

Query: 181 NGMQFVKK 183
           NG+QFVKK
Sbjct: 217 NGLQFVKK 223

[Close]

BLAST of CsGy6G006990 vs. NCBI nr
Match: KAG7014596.1 (Photosystem II reaction center PSB28 protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 286 bits (733), Expect = 3.95e-96
Identity = 153/188 (81.38%), Postives = 166/188 (88.30%), Query Frame = 0


Query: 1   MASLQSLASTTSPSSPHLLHPSSTKPKLSYS---LHSSAFSSFHGRSLSLSTTKCHTLTR 60
           MA+LQSLAST S SSPHL HPSST  K +++   LHSS FS+FHGRSL++S  KC T+TR
Sbjct: 1   MATLQSLAST-SLSSPHLHHPSSTNTKAAFASARLHSSVFSAFHGRSLNVSGGKCQTVTR 60

Query: 61  RTYRQ--RSWNPILMVLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSS 120
           R  +   R  N ILMVLPKIQFIQGTDEQT+PDVRLTKSRDGTNGMAIF+FEQPSVFDSS
Sbjct: 61  RRCQPHGRPSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSS 120

Query: 121 AEVGDITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 180
            EVGDITGFYMIDEEG+IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA
Sbjct: 121 GEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 180

Query: 181 NGMQFVKK 183
           NG+QFVKK
Sbjct: 181 NGLQFVKK 187

[Close]

BLAST of CsGy6G006990 vs. NCBI nr
Match: XP_022991618.1 (photosystem II reaction center PSB28 protein, chloroplastic-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 287 bits (734), Expect = 9.23e-96
Identity = 155/187 (82.89%), Postives = 165/187 (88.24%), Query Frame = 0


Query: 1   MASLQSLASTTSPSSPHLLHPSSTKPKL--SYSLHSSAFSSFHGRSLSLSTTKCHTLTRR 60
           MA+LQSLAST S SSPHL HPSST  K   S  LHSSAFS+FHGRSL++S  KC T+TRR
Sbjct: 37  MATLQSLAST-SLSSPHLHHPSSTNTKAFASARLHSSAFSAFHGRSLNVSGGKCQTVTRR 96

Query: 61  TYRQ--RSWNPILMVLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSA 120
             +   R  N ILMVLPKIQFIQGTDEQT+PDVRLTKSRDGTNGMAIF+FEQPSVFDSS 
Sbjct: 97  RCKPHGRLSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG 156

Query: 121 EVGDITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEG+IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN
Sbjct: 157 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 216

Query: 181 GMQFVKK 183
           G+QFVKK
Sbjct: 217 GLQFVKK 222

[Close]

BLAST of CsGy6G006990 vs. ExPASy TrEMBL
Match: A0A0A0K9C2 (Photosystem II reaction center Psb28 protein OS=Cucumis sativus OX=3659 GN=Csa_6G087980 PE=3 SV=1)

HSP 1 Score: 362 bits (929), Expect = 1.79e-123
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MASLQSLASTTSPSSPHLLHPSSTKPKLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 60
           MASLQSLASTTSPSSPHLLHPSSTKPKLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY
Sbjct: 194 MASLQSLASTTSPSSPHLLHPSSTKPKLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 253

Query: 61  RQRSWNPILMVLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSAEVGD 120
           RQRSWNPILMVLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSAEVGD
Sbjct: 254 RQRSWNPILMVLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSAEVGD 313

Query: 121 ITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGMQF 180
           ITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGMQF
Sbjct: 314 ITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGMQF 373

Query: 181 VKK 183
           VKK
Sbjct: 374 VKK 376

[Close]

BLAST of CsGy6G006990 vs. ExPASy TrEMBL
Match: A0A5A7TA18 (Photosystem II reaction center Psb28 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001560 PE=3 SV=1)

HSP 1 Score: 348 bits (894), Expect = 4.83e-121
Identity = 175/183 (95.63%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 1   MASLQSLASTTSPSSPHLLHPSSTKPKLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 60
           MASLQSLASTTSPSSPHLLHPSSTK +LSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY
Sbjct: 1   MASLQSLASTTSPSSPHLLHPSSTKLRLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 60

Query: 61  RQRSWNPILMVLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSAEVGD 120
           RQR WNPILMV PKIQFIQGTDEQT+PDVRLTKSRDGTNGMAIFRF+QPSVFDSSAEVGD
Sbjct: 61  RQRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEVGD 120

Query: 121 ITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGMQF 180
           ITGFYMIDEEG+IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG+QF
Sbjct: 121 ITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQF 180

Query: 181 VKK 183
           VKK
Sbjct: 181 VKK 183

[Close]

BLAST of CsGy6G006990 vs. ExPASy TrEMBL
Match: A0A1S3CCN2 (Photosystem II reaction center Psb28 protein OS=Cucumis melo OX=3656 GN=LOC103498926 PE=3 SV=1)

HSP 1 Score: 348 bits (894), Expect = 4.83e-121
Identity = 175/183 (95.63%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 1   MASLQSLASTTSPSSPHLLHPSSTKPKLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 60
           MASLQSLASTTSPSSPHLLHPSSTK +LSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY
Sbjct: 1   MASLQSLASTTSPSSPHLLHPSSTKLRLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 60

Query: 61  RQRSWNPILMVLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSAEVGD 120
           RQR WNPILMV PKIQFIQGTDEQT+PDVRLTKSRDGTNGMAIFRF+QPSVFDSSAEVGD
Sbjct: 61  RQRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEVGD 120

Query: 121 ITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGMQF 180
           ITGFYMIDEEG+IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG+QF
Sbjct: 121 ITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQF 180

Query: 181 VKK 183
           VKK
Sbjct: 181 VKK 183

[Close]

BLAST of CsGy6G006990 vs. ExPASy TrEMBL
Match: A0A6J1JMC2 (Photosystem II reaction center Psb28 protein OS=Cucurbita maxima OX=3661 GN=LOC111488181 PE=3 SV=1)

HSP 1 Score: 288 bits (737), Expect = 1.62e-96
Identity = 154/188 (81.91%), Postives = 167/188 (88.83%), Query Frame = 0


Query: 1   MASLQSLASTTSPSSPHLLHPSSTKPKLSYS---LHSSAFSSFHGRSLSLSTTKCHTLTR 60
           MA+LQSLAST S SSPHL HPSST  K +++   LHSSAFS+FHGRSL++S  KC T+TR
Sbjct: 37  MATLQSLAST-SLSSPHLHHPSSTNTKAAFASARLHSSAFSAFHGRSLNVSGGKCQTVTR 96

Query: 61  RTYRQ--RSWNPILMVLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSS 120
           R  +   R  N ILMVLPKIQFIQGTDEQT+PDVRLTKSRDGTNGMAIF+FEQPSVFDSS
Sbjct: 97  RRCKPHGRLSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSS 156

Query: 121 AEVGDITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 180
            EVGDITGFYMIDEEG+IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA
Sbjct: 157 GEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 216

Query: 181 NGMQFVKK 183
           NG+QFVKK
Sbjct: 217 NGLQFVKK 223

[Close]

BLAST of CsGy6G006990 vs. ExPASy TrEMBL
Match: A0A6J1JWT9 (Photosystem II reaction center Psb28 protein OS=Cucurbita maxima OX=3661 GN=LOC111488181 PE=3 SV=1)

HSP 1 Score: 287 bits (734), Expect = 4.47e-96
Identity = 155/187 (82.89%), Postives = 165/187 (88.24%), Query Frame = 0


Query: 1   MASLQSLASTTSPSSPHLLHPSSTKPKL--SYSLHSSAFSSFHGRSLSLSTTKCHTLTRR 60
           MA+LQSLAST S SSPHL HPSST  K   S  LHSSAFS+FHGRSL++S  KC T+TRR
Sbjct: 37  MATLQSLAST-SLSSPHLHHPSSTNTKAFASARLHSSAFSAFHGRSLNVSGGKCQTVTRR 96

Query: 61  TYRQ--RSWNPILMVLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSA 120
             +   R  N ILMVLPKIQFIQGTDEQT+PDVRLTKSRDGTNGMAIF+FEQPSVFDSS 
Sbjct: 97  RCKPHGRLSNTILMVLPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEQPSVFDSSG 156

Query: 121 EVGDITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 180
           EVGDITGFYMIDEEG+IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN
Sbjct: 157 EVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNAN 216

Query: 181 GMQFVKK 183
           G+QFVKK
Sbjct: 217 GLQFVKK 222

[Close]

BLAST of CsGy6G006990 vs. TAIR 10
Match: AT4G28660.2 (photosystem II reaction center PSB28 protein )

HSP 1 Score: 195.7 bits (496), Expect = 3.3e-50
Identity = 97/149 (65.10%), Postives = 118/149 (79.19%), Query Frame = 0


Query: 38  SSFHGRSLSLSTTKCHTLTRRTYRQRSWNPI---LMVLPKIQFIQGTDEQTIPDVRLTKS 97
           SSF G  +SL   +  + T      R   P+   +MV P +QFIQGTDE TIPDV+LT+S
Sbjct: 53  SSFTGSPVSLPRAQPSSRT----ALRPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRS 112

Query: 98  RDGTNGMAIFRFEQPSVFDSSAEVGDITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKY 157
           RDG+NGMA+F F+QPSVFDSS EVG+ITG YMIDEEG+IQS DVNA+F+NGKP GI AK+
Sbjct: 113 RDGSNGMALFSFDQPSVFDSSGEVGEITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKH 172

Query: 158 VMRTPREWDRFMRFMERYSNANGMQFVKK 184
           +MR+P+EWDRFMRFMERYS+ NG+QFVKK
Sbjct: 173 IMRSPKEWDRFMRFMERYSDQNGLQFVKK 197

[Close]

BLAST of CsGy6G006990 vs. TAIR 10
Match: AT4G28660.1 (photosystem II reaction center PSB28 protein )

HSP 1 Score: 194.9 bits (494), Expect = 5.7e-50
Identity = 107/186 (57.53%), Postives = 133/186 (71.51%), Query Frame = 0


Query: 1   MASLQSLASTTSPSSPHLLHPSSTKPKLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 60
           MA ++S+ S TS +      P S     S S+     SSF G  +SL   +  + T    
Sbjct: 1   MACVRSIGSLTSVNHSQRNVPRSGIVLSSCSVLPIKSSSFTGSPVSLPRAQPSSRT---- 60

Query: 61  RQRSWNPI---LMVLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSAE 120
             R   P+   +MV P +QFIQGTDE TIPDV+LT+SRDG+NGMA+F F+QPSVFDSS E
Sbjct: 61  ALRPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSSGE 120

Query: 121 VGDITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG 180
           VG+ITG YMIDEEG+IQS DVNA+F+NGKP GI AK++MR+P+EWDRFMRFMERYS+ NG
Sbjct: 121 VGEITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMERYSDQNG 180

Query: 181 MQFVKK 184
           +QFVKK
Sbjct: 181 LQFVKK 182

The following BLAST results are available for this feature:

BLAST of CsGy6G006990 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0JG75	1.4e-53	63.83	Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subs...	[more]
Q8W0Y8	8.0e-49	57.53	Photosystem II reaction center PSB28 protein, chloroplastic OS=Arabidopsis thali...	[more]
P49508	3.9e-35	60.00	Photosystem II reaction center Psb28 protein OS=Trieres chinensis OX=1514140 GN=...	[more]
A0T0H5	1.1e-34	58.18	Photosystem II reaction center Psb28 protein OS=Phaeodactylum tricornutum (strai...	[more]
O78418	1.9e-34	61.47	Photosystem II reaction center Psb28 protein OS=Guillardia theta OX=55529 GN=psb...	[more]

BLAST of CsGy6G006990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011656766.1	2.10e-125	100.00	photosystem II reaction center PSB28 protein, chloroplastic [Cucumis sativus]	[more]
XP_008459971.1	9.97e-121	95.63	PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic [Cucumis ...	[more]
XP_022991617.1	3.34e-96	81.91	photosystem II reaction center PSB28 protein, chloroplastic-like isoform X1 [Cuc...	[more]
KAG7014596.1	3.95e-96	81.38	Photosystem II reaction center PSB28 protein, chloroplastic [Cucurbita argyrospe...	[more]
XP_022991618.1	9.23e-96	82.89	photosystem II reaction center PSB28 protein, chloroplastic-like isoform X2 [Cuc...	[more]

BLAST of CsGy6G006990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9C2	1.79e-123	100.00	Photosystem II reaction center Psb28 protein OS=Cucumis sativus OX=3659 GN=Csa_6...	[more]
A0A5A7TA18	4.83e-121	95.63	Photosystem II reaction center Psb28 protein OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3CCN2	4.83e-121	95.63	Photosystem II reaction center Psb28 protein OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A6J1JMC2	1.62e-96	81.91	Photosystem II reaction center Psb28 protein OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1JWT9	4.47e-96	82.89	Photosystem II reaction center Psb28 protein OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]

BLAST of CsGy6G006990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28660.2	3.3e-50	65.10	photosystem II reaction center PSB28 protein	[more]
AT4G28660.1	5.7e-50	57.53	photosystem II reaction center PSB28 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038676	Photosystem II Psb28, class 1 superfamily	GENE3D	2.40.30.220	Photosystem II Psb28	coord: 72..183 e-value: 8.3E-46 score: 156.9
IPR005610	Photosystem II Psb28, class 1	PFAM	PF03912	Psb28	coord: 75..180 e-value: 2.1E-43 score: 146.8
IPR005610	Photosystem II Psb28, class 1	TIGRFAM	TIGR03047	TIGR03047	coord: 75..181 e-value: 7.4E-46 score: 152.9
IPR005610	Photosystem II Psb28, class 1	PANTHER	PTHR34963	FAMILY NOT NAMED	coord: 1..183
IPR005610	Photosystem II Psb28, class 1	HAMAP	MF_01370	PSII_Psb28	coord: 72..181 score: 30.478619
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G006990.1	CsGy6G006990.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0016020	membrane
cellular_component	GO:0009523	photosystem II