CsGy6G006985 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G006985
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Xyloglucan galactosyltransferase KATAMARI1-like protein
Location	Gy14Chr6: 6028175 .. 6028546 (+)
RNA-Seq Expression	CsGy6G006985
Synteny	CsGy6G006985

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCGAGAGACGAGAACGAGGCACTCGAGGGAGTGAGGTTGGAAGGTGGAAACATGGGAGCTTCAATGTCAGTCAGCCATGGAGGTGAGTGTAAATTACCTAACTGTTGTTGCATAAACATTTATGTGAACAGCAACATTCAAGGTGTGAACAATTCAACATTGAATGGGGGCGAGGTCAAAATGGGAAGTCCAGGAGTTTTCTTCTTGTTTGGAGATATGGAACCAAAACTACATCAAAATAAAACTTCATCCCTTCATCAAAATCCCAAGTTATGGCAATGGGGTTTAATGATTCTTCTTCTTCTTTTTCTTCTTCTACCACTCCTTTTTATGTTACTTTTAGAAATCAAAATGCTTCATTCGTAA

mRNA sequence

ATGGAAGCGAGAGACGAGAACGAGGCACTCGAGGGAGTGAGGTTGGAAGGTGGAAACATGGGAGCTTCAATGTCAGTCAGCCATGGAGGTGAGTGTAAATTACCTAACTGTTGTTGCATAAACATTTATGTGAACAGCAACATTCAAGGTGTGAACAATTCAACATTGAATGGGGGCGAGGTCAAAATGGGAAGTCCAGGAGTTTTCTTCTTGTTTGGAGATATGGAACCAAAACTACATCAAAATAAAACTTCATCCCTTCATCAAAATCCCAAGTTATGGCAATGGGGTTTAATGATTCTTCTTCTTCTTTTTCTTCTTCTACCACTCCTTTTTATGTTACTTTTAGAAATCAAAATGCTTCATTCGTAA

Coding sequence (CDS)

ATGGAAGCGAGAGACGAGAACGAGGCACTCGAGGGAGTGAGGTTGGAAGGTGGAAACATGGGAGCTTCAATGTCAGTCAGCCATGGAGGTGAGTGTAAATTACCTAACTGTTGTTGCATAAACATTTATGTGAACAGCAACATTCAAGGTGTGAACAATTCAACATTGAATGGGGGCGAGGTCAAAATGGGAAGTCCAGGAGTTTTCTTCTTGTTTGGAGATATGGAACCAAAACTACATCAAAATAAAACTTCATCCCTTCATCAAAATCCCAAGTTATGGCAATGGGGTTTAATGATTCTTCTTCTTCTTTTTCTTCTTCTACCACTCCTTTTTATGTTACTTTTAGAAATCAAAATGCTTCATTCGTAA

Protein sequence

MEARDENEALEGVRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNGGEVKMGSPGVFFLFGDMEPKLHQNKTSSLHQNPKLWQWGLMILLLLFLLLPLLFMLLLEIKMLHS*

Homology

[Close]

BLAST of CsGy6G006985 vs. NCBI nr
Match: KGN46369.1 (hypothetical protein Csa_004893 [Cucumis sativus])

HSP 1 Score: 241 bits (614), Expect = 5.50e-80
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MEARDENEALEGVRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNGGE 60
           MEARDENEALEGVRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNGGE
Sbjct: 1   MEARDENEALEGVRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNGGE 60

Query: 61  VKMGSPGVFFLFGDMEPKLHQNKTSSLHQNPKLWQWGLMILLLLFLLLPLLFMLLLEIKM 120
           VKMGSPGVFFLFGDMEPKLHQNKTSSLHQNPKLWQWGLMILLLLFLLLPLLFMLLLEIKM
Sbjct: 61  VKMGSPGVFFLFGDMEPKLHQNKTSSLHQNPKLWQWGLMILLLLFLLLPLLFMLLLEIKM 120

Query: 121 LHS 123
           LHS
Sbjct: 121 LHS 123

[Close]

BLAST of CsGy6G006985 vs. NCBI nr
Match: KAA0039894.1 (xyloglucan galactosyltransferase KATAMARI1-like protein [Cucumis melo var. makuwa] >TYK24608.1 xyloglucan galactosyltransferase KATAMARI1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 140 bits (352), Expect = 1.70e-40
Identity = 68/73 (93.15%), Postives = 70/73 (95.89%), Query Frame = 0


Query: 1  MEARDENEALEGVRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNGGE 60
          MEAR E+EA E +RLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNGGE
Sbjct: 1  MEARGEDEAPERLRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNGGE 60

Query: 61 VKMGSPGVFFLFG 73
          VKMGSPGVFFLFG
Sbjct: 61 VKMGSPGVFFLFG 73

[Close]

BLAST of CsGy6G006985 vs. NCBI nr
Match: KAG6592845.1 (hypothetical protein SDJN03_12321, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 91.7 bits (226), Expect = 4.35e-21
Identity = 48/63 (76.19%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 1  MEARDENE--ALEGVRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNG 60
          ME  DE+   A E VRL G N+GASMSVSHG E KLPNCCCINIYVNSNIQGVNNSTLNG
Sbjct: 1  MEVGDEDGVGAFERVRLGGRNIGASMSVSHGSEGKLPNCCCINIYVNSNIQGVNNSTLNG 60

[Close]

BLAST of CsGy6G006985 vs. NCBI nr
Match: PON31494.1 (Transmembrane protein [Trema orientale])

HSP 1 Score: 82.0 bits (201), Expect = 3.31e-17
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 0


Query: 8  EALEGVRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNGGEVKMGSPG 67
          E+ E + LEG N GAS S+  G   +  +CCCINIY+N+N+QG NNS L G EV+M  PG
Sbjct: 8  ESFERINLEGKNSGASFSLHRGDRSESHDCCCINIYINNNVQGANNSVLYGSEVQMRDPG 67

Query: 68 VFFLFGDMEPKLHQNKTSSLHQNPK 92
          V   FGD++      +T+   +N +
Sbjct: 68 VHLFFGDVKLGTKTKRTNKKRKNKR 92

[Close]

BLAST of CsGy6G006985 vs. NCBI nr
Match: KAG5586958.1 (hypothetical protein H5410_047392 [Solanum commersonii])

HSP 1 Score: 79.3 bits (194), Expect = 3.05e-16
Identity = 44/87 (50.57%), Postives = 56/87 (64.37%), Query Frame = 0


Query: 1  MEARDENEALEGVRLEGGNMGASMSVSHGG-ECKLPNCCCINIYVNSNIQGVNNSTLNGG 60
          M   + +   E V+LEG N+GASM    GG   +  +CCCINIY+++NIQGVNNS L G 
Sbjct: 1  MSPENRHGQFEHVKLEGKNVGASMIARRGGCSGESHDCCCINIYISNNIQGVNNSILFGS 60

Query: 61 EVKMGSPGVFFLFGDMEPKLHQNKTSS 86
          +VKMG PGV F   D+  KLH+ K  S
Sbjct: 61 KVKMGDPGVSFSMKDV--KLHRGKMGS 85

[Close]

BLAST of CsGy6G006985 vs. ExPASy TrEMBL
Match: A0A0A0KBZ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G087970 PE=4 SV=1)

HSP 1 Score: 241 bits (614), Expect = 2.66e-80
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MEARDENEALEGVRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNGGE 60
           MEARDENEALEGVRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNGGE
Sbjct: 1   MEARDENEALEGVRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNGGE 60

Query: 61  VKMGSPGVFFLFGDMEPKLHQNKTSSLHQNPKLWQWGLMILLLLFLLLPLLFMLLLEIKM 120
           VKMGSPGVFFLFGDMEPKLHQNKTSSLHQNPKLWQWGLMILLLLFLLLPLLFMLLLEIKM
Sbjct: 61  VKMGSPGVFFLFGDMEPKLHQNKTSSLHQNPKLWQWGLMILLLLFLLLPLLFMLLLEIKM 120

Query: 121 LHS 123
           LHS
Sbjct: 121 LHS 123

[Close]

BLAST of CsGy6G006985 vs. ExPASy TrEMBL
Match: A0A5A7T8V9 (Xyloglucan galactosyltransferase KATAMARI1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001550 PE=4 SV=1)

HSP 1 Score: 140 bits (352), Expect = 8.22e-41
Identity = 68/73 (93.15%), Postives = 70/73 (95.89%), Query Frame = 0


Query: 1  MEARDENEALEGVRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNGGE 60
          MEAR E+EA E +RLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNGGE
Sbjct: 1  MEARGEDEAPERLRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNGGE 60

Query: 61 VKMGSPGVFFLFG 73
          VKMGSPGVFFLFG
Sbjct: 61 VKMGSPGVFFLFG 73

[Close]

BLAST of CsGy6G006985 vs. ExPASy TrEMBL
Match: A0A2P5A4P7 (Transmembrane protein OS=Trema orientale OX=63057 GN=TorRG33x02_357670 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.60e-17
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 0


Query: 8  EALEGVRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNGGEVKMGSPG 67
          E+ E + LEG N GAS S+  G   +  +CCCINIY+N+N+QG NNS L G EV+M  PG
Sbjct: 8  ESFERINLEGKNSGASFSLHRGDRSESHDCCCINIYINNNVQGANNSVLYGSEVQMRDPG 67

Query: 68 VFFLFGDMEPKLHQNKTSSLHQNPK 92
          V   FGD++      +T+   +N +
Sbjct: 68 VHLFFGDVKLGTKTKRTNKKRKNKR 92

[Close]

BLAST of CsGy6G006985 vs. ExPASy TrEMBL
Match: M1AG80 (Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.48e-16
Identity = 44/87 (50.57%), Postives = 56/87 (64.37%), Query Frame = 0


Query: 1  MEARDENEALEGVRLEGGNMGASMSVSHGG-ECKLPNCCCINIYVNSNIQGVNNSTLNGG 60
          M   + +   E V+LEG N+GASM    GG   +  +CCCINIY+++NIQGVNNS L G 
Sbjct: 1  MSPENRHGQFEHVKLEGKNVGASMIARRGGCSGESHDCCCINIYISNNIQGVNNSILFGS 60

Query: 61 EVKMGSPGVFFLFGDMEPKLHQNKTSS 86
          +VKMG PGV F   D+  KLH+ K  S
Sbjct: 61 KVKMGDPGVSFSMKDV--KLHRGKMGS 85

[Close]

BLAST of CsGy6G006985 vs. ExPASy TrEMBL
Match: K7KFJ6 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_03G167700 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.65e-15
Identity = 44/99 (44.44%), Postives = 65/99 (65.66%), Query Frame = 0


Query: 1  MEARDENEALEGVRLEGGNMGASMSVSHG---GECKLPNCCCINIYVNSNIQGVNNSTLN 60
          M++  ++++ E + LEG N+GA+M V H    GE K  +CCCINIYVN+N+QGV+NS L+
Sbjct: 1  MDSNFKHDSFEYINLEGENVGATMRVRHRSTKGESK--DCCCINIYVNNNVQGVSNSVLH 60

Query: 61 GGEVKMGSPGVFFLFGDMEPKLHQNKTSSLHQNPKLWQW 96
          G EV+M  PGV   F ++  K+ +   SS   N +L+ W
Sbjct: 61 GSEVRMRDPGVSLYFENL--KVDKGTLSS---NKRLFSW 92

[Close]

BLAST of CsGy6G006985 vs. TAIR 10
Match: AT2G20362.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G63310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 47.4 bits (111), Expect = 9.9e-06
Identity = 35/103 (33.98%), Postives = 52/103 (50.49%), Query Frame = 0


Query: 12  GVRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNGGEVKMGSPGVFFL 71
           G+ L G N+GA M      +    + C INIYVNSN+Q    S L G +VK+  PGV   
Sbjct: 16  GINLNGRNVGAVMVAPRDVDIASQSGCRINIYVNSNVQATCGSALIGSKVKLRDPGVHLH 75

Query: 72  FGDMEPKLHQNKTSSLHQNPKLWQWGLMILLLLFLLLPLLFML 115
             D+  K+ ++ T S  +   L + GL ++ L  + L  +  L
Sbjct: 76  IDDV--KMTRDDTISRQKEMTLIKVGLCLVCLFNMFLVFILFL 116

[Close]

BLAST of CsGy6G006985 vs. TAIR 10
Match: AT1G63310.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20362.1); Has 78 Blast hits to 77 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.0 bits (97), Expect = 4.2e-04
Identity = 28/82 (34.15%), Postives = 44/82 (53.66%), Query Frame = 0


Query: 5   DENEALEGVRLEGGNMGASMSV----SHG-----GECKLPNCCCINIYVNSNIQGVNNST 64
           +E + +  + L G N+GA+M      +HG     G+ +L     ++ YVNSN Q VNNS 
Sbjct: 45  EEEDGIRVITLSGSNLGATMKTELDNNHGDRDQNGDHELD---FLSTYVNSNFQAVNNSI 104

Query: 65  LNGGEVKMGSPGVFF-LFGDME 77
           + G + +   PGV   + GD+E
Sbjct: 105 MIGAKYETHDPGVHLDISGDVE 123

The following BLAST results are available for this feature:

BLAST of CsGy6G006985 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy6G006985 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN46369.1	5.50e-80	100.00	hypothetical protein Csa_004893 [Cucumis sativus]	[more]
KAA0039894.1	1.70e-40	93.15	xyloglucan galactosyltransferase KATAMARI1-like protein [Cucumis melo var. makuw...	[more]
KAG6592845.1	4.35e-21	76.19	hypothetical protein SDJN03_12321, partial [Cucurbita argyrosperma subsp. sorori...	[more]
PON31494.1	3.31e-17	44.71	Transmembrane protein [Trema orientale]	[more]
KAG5586958.1	3.05e-16	50.57	hypothetical protein H5410_047392 [Solanum commersonii]	[more]

BLAST of CsGy6G006985 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBZ5	2.66e-80	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G087970 PE=4 SV=1	[more]
A0A5A7T8V9	8.22e-41	93.15	Xyloglucan galactosyltransferase KATAMARI1-like protein OS=Cucumis melo var. mak...	[more]
A0A2P5A4P7	1.60e-17	44.71	Transmembrane protein OS=Trema orientale OX=63057 GN=TorRG33x02_357670 PE=4 SV=1	[more]
M1AG80	1.48e-16	50.57	Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1	[more]
K7KFJ6	1.65e-15	44.44	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_03G167700 PE=4 SV=1	[more]

BLAST of CsGy6G006985 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20362.1	9.9e-06	33.98	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G63310.1	4.2e-04	34.15	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33472:SF9	OXIDOREDUCTASES, ACTING ON NADH OR NADPH-RELATED	coord: 1..86
None	No IPR available	PANTHER	PTHR33472	OS01G0106600 PROTEIN	coord: 1..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G006985.1	CsGy6G006985.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016757	glycosyltransferase activity