CsGy6G006770 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G006770
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	RNA-binding protein 38
Location	Gy14Chr6: 5820494 .. 5823417 (+)
RNA-Seq Expression	CsGy6G006770
Synteny	CsGy6G006770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAGAGTCTATGGTTAGGAAGGAAGAAGAATTAGTTTAGGAATGTCTTGAATGTGTTGATTCGAATACAGCGAAGCAAATGCTAATCCAGACCAATCCAGCAAATATAATAATAACAACGAAAAAGAGTTTAAATATTCTATTTTTGGTATTAGCAAAAATCTCTCTCGAGGCTCTGTCGTCGTGCGTGGGAACCCACTAGCAGCTTTTTTGTCTTTCTCTCATTTTCTCTCTATCTCTCTTCTTCTTCTTCTTCGTCGTCCTCGATTATCATATTGTCTTTTGATATTATATAATCTATAATTCTTCTATATATATATATATATGTACATTACATCTCATTACAAAACAAAACAAAAGGGGGTTTCTTTTTTTTTTCTTTTTTTTCTCTCTCCTTTTTTTACCCTCAAAAACAGTAATGATTTTCTCGTTAAGGGTATCATTGTTGGAGGAATCTGGGTAGTTGTTTTTGTTTGTGTATGTGGAGAAAAGGGTAGTTATTAGAAAAAAGAAAAAAACAAAAACCATTCTTTTTCCTTCTCCTTCTCTTGAGAAAGAGAAAAAGATGGGAGTCCATTGATTTGGTCTTGAAAACATTTGTTTGTTTTTTGGGGTTAAGATTTCTTTGCATTCTAGACTAATTTTGTGCTTTTTGGGGAGAGGCATATTTTTTTTTTTGTGGTTCTCTCTCTATTTTTGTTTTTCCCTTATGTCTCAACAGAGGCAATTTCATAACATTAACAGCAGCAATAATAGCAGCAGCCTTAGCCTTGGAGGTCAATACAATGATACCACTTTCACCAAAATTTTTGTTGGAGGTTTGGCTTGGGAGACTCAAAGACATACCATGAGAAGGTATTTTGAACAATTTGGTGAAATCTTGGAAGCTGTTGTAATTACTGACAAAAACACTGGCAGATCCAAGGGTTATGGCTTTGTAAGTCCCTTTTTCTTTTCCCTTCTTCTTGTCAAAATGGGGATTTTGATTTTGATTTTGATTTCTGGGATTTGATTGATTTCTTTTTGTTTTTAGGTAACATTTAAAGATCCTGATGCTGCCATTAGAGCCTGTCAAAACCCTTCGCCTGTTATTGATGGAAGAAGGGCTAACTGTAATCTTGCTTCTCTTGGTGCTCATAAGCCACATCCTCCCACTCCTCAACATGGTTCTTCTTGATTCTTTTTCATCTGTACCCTTTTTCTTTGTTAACTAAATGCTTTGATCTCTTCAATGGATTATAAAATTTCCCACATGCAATGTGTTTGTTTTTTTCCATTGCTTTCTTTGAATTCTCACCTTCAATGGAGGAGGTTGAATCTGCATTTTGAAGGACATTTTTTTGTCTTTTTGGCTGTGAAACATATGAAATCTAAAACAAACATAAGGGGAGTAATATTTTCTCAAAAGTAACCACAAAGTTTGTGGAACAAATTTGTAGGTGTTGGTGGAAGATTTAGAGGTGCATCTGGGATTGTGACACCTCCTGCTTATCATGTTTCTTCATCATCTTATATTCATCAACCCACTAGTCAATACTCATTCCCTCTTTCAGGATATGGGTAAGGTTGAAAAACAAGAATTATAAATGGGATCAAACAAGACCCAATTTTCCCATTATCCCCTTTTATCGATTAATTAATATAATACTGTCCTTTTTGTTTTTTCTTTTGGCCTCATTTCAGGTTTGCTGGATATTCACAAGACAGAATTTATCCATTGGTGTGAATCTGTGTTTTTATGTCTATATGAGTGTTGTTTCTTTTTGGTTTGATGTTGTTTTGTGTTTGTGATCTTCTTGGTGGAATTGATTTTGATTTAAGCATTGTGTTTTCGATGCAGAACTATTACGGTGTTTACGGGGGCCAACAGTTTTCTCCTTATTACTCTGCGAATGGGCTCTCAGGACCGGCTGGAATGTTTCAAAATCTCTATCCGTATTACGCTCAAAGTAGCCAGGGGTACGGGTTTGGAATGCAATATCCACACTTAATGCAGTACCCATATCTTCCTCAGCAGCACAGTTCGACGGGTATCCTATCACTTCCTGGCTCGAACGCATTGGGAACGACAACTTCAGGTGCTAAATGAAATATAAATGCTTGTAATCTAATCCATTAGTATGTCATTGATGTTTGAGAATTGGTGTCTGAAGAATGTCATTTTGATGTTGGTTTCAAAAGTGGTTTGGAGATTTATGTGAAAAATGTAACAGGTACAACAGCAACAACGATAACAGCGGTTGGATCAGGGCCTTCACAAGCTTCACCTGCAGTAGCATCTGAACCAAATTCGTCGGAGTTAATTTCAACTGGATGATGATAAAGTCTTTCTTTATCACACGCTAACCACGTAGACAAAGCTTGGAAAACAAAACTGTCTGAGGGAATACTGAATAACAATGGAGAGGGGGGCAAGTTTCTTAAGTCGTGTGATTCGATAAGAAGAAAAAGGAATCCATGTTCCAGCATCATCGAGTCGTTCGTTAAAAGTCGGTAACAAGCATATCCCAGAGATGAATTACAAAGTTGGTTCAGTAACATATCATATCCATCTCTATCAACATTATTTTATGTTTGGTCCAGTGTATTTGAAGAGGAGTCTACAAGTAGTTTGTTTAGAACTAGGTGAAGAATTTTATTCATTCATGTATTTTAAGCGAAAAGACTGGGAGGAACACGAAAGAAGGCGCTTTCGATTCTCCTTGTCTTGACGATCGTGTTGGGGAAGCATGGAAGCATCCTATGACACACTCTTGTTTATATAATTTAACAGTGAAATGGTTCAAAAGATTGATTTTATGTCTTTTGAGCATCACAATTTATGGTTGGTCAACATGGAAAGGCAAGCTCCAAAAAGCTTAGCTTGGTTGATTTGTAATTTATGGATCTTCTTTTGATTAAAATACTTTTGGATTAGTTAGAACA

mRNA sequence

GTAGAGTCTATGGTTAGGAAGGAAGAAGAATTAGTTTAGGAATGTCTTGAATGTGTTGATTCGAATACAGCGAAGCAAATGCTAATCCAGACCAATCCAGCAAATATAATAATAACAACGAAAAAGAGTTTAAATATTCTATTTTTGGTATTAGCAAAAATCTCTCTCGAGGCTCTGTCGTCGTGCGTGGGAACCCACTAGCAGCTTTTTTGTCTTTCTCTCATTTTCTCTCTATCTCTCTTCTTCTTCTTCTTCGTCGTCCTCGATTATCATATTGTCTTTTGATATTATATAATCTATAATTCTTCTATATATATATATATATGTACATTACATCTCATTACAAAACAAAACAAAAGGGGGTTTCTTTTTTTTTTCTTTTTTTTCTCTCTCCTTTTTTTACCCTCAAAAACAGTAATGATTTTCTCGTTAAGGGTATCATTGTTGGAGGAATCTGGGTAGTTGTTTTTGTTTGTGTATGTGGAGAAAAGGGTAGTTATTAGAAAAAAGAAAAAAACAAAAACCATTCTTTTTCCTTCTCCTTCTCTTGAGAAAGAGAAAAAGATGGGAGTCCATTGATTTGGTCTTGAAAACATTTGTTTGTTTTTTGGGGTTAAGATTTCTTTGCATTCTAGACTAATTTTGTGCTTTTTGGGGAGAGGCATATTTTTTTTTTTGTGGTTCTCTCTCTATTTTTGTTTTTCCCTTATGTCTCAACAGAGGCAATTTCATAACATTAACAGCAGCAATAATAGCAGCAGCCTTAGCCTTGGAGGTCAATACAATGATACCACTTTCACCAAAATTTTTGTTGGAGGTTTGGCTTGGGAGACTCAAAGACATACCATGAGAAGGTATTTTGAACAATTTGGTGAAATCTTGGAAGCTGTTGTAATTACTGACAAAAACACTGGCAGATCCAAGGGTTATGGCTTTGTAACATTTAAAGATCCTGATGCTGCCATTAGAGCCTGTCAAAACCCTTCGCCTGTTATTGATGGAAGAAGGGCTAACTGTAATCTTGCTTCTCTTGGTGCTCATAAGCCACATCCTCCCACTCCTCAACATGGTGTTGGTGGAAGATTTAGAGGTGCATCTGGGATTGTGACACCTCCTGCTTATCATGTTTCTTCATCATCTTATATTCATCAACCCACTAGTCAATACTCATTCCCTCTTTCAGGATATGGGTTTGCTGGATATTCACAAGACAGAATTTATCCATTGAACTATTACGGTGTTTACGGGGGCCAACAGTTTTCTCCTTATTACTCTGCGAATGGGCTCTCAGGACCGGCTGGAATGTTTCAAAATCTCTATCCGTATTACGCTCAAAGTAGCCAGGGGTACGGGTTTGGAATGCAATATCCACACTTAATGCAGTACCCATATCTTCCTCAGCAGCACAGTTCGACGGGTATCCTATCACTTCCTGGCTCGAACGCATTGGGAACGACAACTTCAGGTGCTAAATGAAATATAAATGCTTGTAATCTAATCCATTAGTATGTCATTGATGTTTGAGAATTGGTGTCTGAAGAATGTCATTTTGATGTTGGTTTCAAAAGTGGTTTGGAGATTTATGTGAAAAATGTAACAGGTACAACAGCAACAACGATAACAGCGGTTGGATCAGGGCCTTCACAAGCTTCACCTGCAGTAGCATCTGAACCAAATTCGTCGGAGTTAATTTCAACTGGATGATGATAAAGTCTTTCTTTATCACACGCTAACCACGTAGACAAAGCTTGGAAAACAAAACTGTCTGAGGGAATACTGAATAACAATGGAGAGGGGGGCAAGTTTCTTAAGTCGTGTGATTCGATAAGAAGAAAAAGGAATCCATGTTCCAGCATCATCGAGTCGTTCGTTAAAAGTCGGTAACAAGCATATCCCAGAGATGAATTACAAAGTTGGTTCAGTAACATATCATATCCATCTCTATCAACATTATTTTATGTTTGGTCCAGTGTATTTGAAGAGGAGTCTACAAGTAGTTTGTTTAGAACTAGGTGAAGAATTTTATTCATTCATGTATTTTAAGCGAAAAGACTGGGAGGAACACGAAAGAAGGCGCTTTCGATTCTCCTTGTCTTGACGATCGTGTTGGGGAAGCATGGAAGCATCCTATGACACACTCTTGTTTATATAATTTAACAGTGAAATGGTTCAAAAGATTGATTTTATGTCTTTTGAGCATCACAATTTATGGTTGGTCAACATGGAAAGGCAAGCTCCAAAAAGCTTAGCTTGGTTGATTTGTAATTTATGGATCTTCTTTTGATTAAAATACTTTTGGATTAGTTAGAACA

Coding sequence (CDS)

ATGTCTCAACAGAGGCAATTTCATAACATTAACAGCAGCAATAATAGCAGCAGCCTTAGCCTTGGAGGTCAATACAATGATACCACTTTCACCAAAATTTTTGTTGGAGGTTTGGCTTGGGAGACTCAAAGACATACCATGAGAAGGTATTTTGAACAATTTGGTGAAATCTTGGAAGCTGTTGTAATTACTGACAAAAACACTGGCAGATCCAAGGGTTATGGCTTTGTAACATTTAAAGATCCTGATGCTGCCATTAGAGCCTGTCAAAACCCTTCGCCTGTTATTGATGGAAGAAGGGCTAACTGTAATCTTGCTTCTCTTGGTGCTCATAAGCCACATCCTCCCACTCCTCAACATGGTGTTGGTGGAAGATTTAGAGGTGCATCTGGGATTGTGACACCTCCTGCTTATCATGTTTCTTCATCATCTTATATTCATCAACCCACTAGTCAATACTCATTCCCTCTTTCAGGATATGGGTTTGCTGGATATTCACAAGACAGAATTTATCCATTGAACTATTACGGTGTTTACGGGGGCCAACAGTTTTCTCCTTATTACTCTGCGAATGGGCTCTCAGGACCGGCTGGAATGTTTCAAAATCTCTATCCGTATTACGCTCAAAGTAGCCAGGGGTACGGGTTTGGAATGCAATATCCACACTTAATGCAGTACCCATATCTTCCTCAGCAGCACAGTTCGACGGGTATCCTATCACTTCCTGGCTCGAACGCATTGGGAACGACAACTTCAGGTGCTAAATGA

Protein sequence

MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQHGVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYGGQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGMQYPHLMQYPYLPQQHSSTGILSLPGSNALGTTTSGAK*

Homology

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BLAST of CsGy6G006770 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.2e-28
Identity = 91/234 (38.89%), Postives = 117/234 (50.00%), Query Frame = 0


Query: 16  SSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYG 75
           ++S ++ G + DT  TK+FVGGLAW+T +  M  +F ++G+ILEAV+I+DK T RSKGYG
Sbjct: 2   TTSNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYG 61

Query: 76  FVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPT---PQHGVGGRFRGASGI 135
           FVTFKD  AA RAC++ +P+I+GRRANCNLASLG      PT   PQ G     R     
Sbjct: 62  FVTFKDAKAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQGPKNGNR----- 121

Query: 136 VTPPAYHVSSSSYI--------HQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYGGQQF 195
            TPP     S  Y         HQ  +  + P  GY  A  + +  +     G  GG   
Sbjct: 122 ATPPHVGNHSQWYYPSGFTNQQHQQQNHQAVPFYGYPSAYVAPNMTFN-QKVGYVGGTYM 181

Query: 196 SPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGM------QYPHLMQYPYLPQQ 233
           + YY+      P    Q    YY     G G  M        P    YPY   Q
Sbjct: 182 NGYYAQ---MQPQPQSQPQPQYYHHHMYGGGRVMVGAASPMVPFYTVYPYHQSQ 226

[Close]

BLAST of CsGy6G006770 vs. ExPASy Swiss-Prot
Match: Q9BX46 (RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.4e-27
Identity = 86/215 (40.00%), Postives = 115/215 (53.49%), Query Frame = 0


Query: 27  DTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 86
           DTT+TKIFVGGL + T   ++R+YFE FGEI EAVVITD+ TG+S+GYGFVT  D  AA 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 87  RACQNPSPVIDGRRANCNLASLGAHKPHPPTPQHGVGGRFRGASGIVTP---PAYHVSSS 146
           RAC++P+P+IDGR+AN NLA LGA KP    P    G +    + I  P   PA++V   
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGA-KPRIMQPGFAFGVQQLHPALIQRPFGIPAHYVYPQ 126

Query: 147 SYIH--------QPT--SQYSFPLSGYGFAGYSQDRIYPLNYYGVYGGQQFSPYYSANGL 206
           +++         QPT  +  + P   Y  A Y+Q                    YSA   
Sbjct: 127 AFVQPGVVIPHVQPTAAAASTTPYIDYTGAAYAQ--------------------YSAAAA 186

Query: 207 SGPAGMFQNLYPYYAQ-------SSQGYGFGMQYP 222
           +  A    + YPY A        ++ GYG+ +Q P
Sbjct: 187 AAAAAAAYDQYPYAASPAAAGYVTAGGYGYAVQQP 200

[Close]

BLAST of CsGy6G006770 vs. ExPASy Swiss-Prot
Match: Q9H0Z9 (RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2)

HSP 1 Score: 121.7 bits (304), Expect = 1.2e-26
Identity = 57/91 (62.64%), Postives = 72/91 (79.12%), Query Frame = 0


Query: 20  SLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTF 79
           ++ G   DTTFTKIFVGGL + T   ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT 
Sbjct: 23  AMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTM 82

Query: 80  KDPDAAIRACQNPSPVIDGRRANCNLASLGA 111
            D  AA RAC++P+P+IDGR+AN NLA LGA
Sbjct: 83  ADRAAAERACKDPNPIIDGRKANVNLAYLGA 113

[Close]

BLAST of CsGy6G006770 vs. ExPASy Swiss-Prot
Match: D3Z4I3 (RNA-binding protein 24 OS=Mus musculus OX=10090 GN=Rbm24 PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.6e-26
Identity = 84/215 (39.07%), Postives = 114/215 (53.02%), Query Frame = 0


Query: 27  DTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 86
           DTT+TKIFVGGL + T   ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT  D  AA 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 87  RACQNPSPVIDGRRANCNLASLGAHKPHPPTPQHGVGGRFRGASGIVTP---PAYHVSSS 146
           RAC++P+P+IDGR+AN NLA LGA KP    P    G +    + I  P   PA++V   
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGA-KPRIMQPGFAFGVQQLHPALIQRPFGIPAHYVYPQ 126

Query: 147 SYIH--------QPT--SQYSFPLSGYGFAGYSQDRIYPLNYYGVYGGQQFSPYYSANGL 206
           +++         QPT  +  + P   Y  A Y+Q                    YSA   
Sbjct: 127 AFVQPGVVIPHVQPTAAAASTTPYIDYTGAAYAQ--------------------YSAAAA 186

Query: 207 SGPAGMFQNLYPYYAQ-------SSQGYGFGMQYP 222
           +  A    + YPY A        ++ GY + +Q P
Sbjct: 187 AAAAAAAYDQYPYAASPAAAGYVTTGGYSYAVQQP 200

[Close]

BLAST of CsGy6G006770 vs. ExPASy Swiss-Prot
Match: Q76LC6 (RNA-binding protein 24 OS=Danio rerio OX=7955 GN=rbm24 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.0e-26
Identity = 86/202 (42.57%), Postives = 109/202 (53.96%), Query Frame = 0


Query: 27  DTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 86
           DTT+TKIFVGGL + T   ++R+YFE FGEI EAVVITD+ TG+S+GYGFVT  D  AA 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAD 66

Query: 87  RACQNPSPVIDGRRANCNLASLGAHKPHPPTPQHGVGGRFRGASGIVTPPAYHVSSSSYI 146
           RAC++P+P+IDGR+AN NLA LGA KP    P    G      + I  P  Y + +    
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGA-KPRVMQPGFTFGVPQIHPAFIQRP--YGIPTHYVY 126

Query: 147 HQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYGGQQFSPYYSANGLSGPAGMFQNLYPY 206
            Q   Q S  +        S     P   Y  Y G  ++ Y SA   +  A   Q  YPY
Sbjct: 127 PQAFMQPSVVIPHIQPTATSATASSP---YIDYTGAAYAQYASAATAAAAAAYEQ--YPY 186

Query: 207 YAQ-------SSQGYGFGMQYP 222
            A        ++ GYG+ MQ P
Sbjct: 187 AASPAATGYVAAAGYGYAMQQP 200

[Close]

BLAST of CsGy6G006770 vs. NCBI nr
Match: XP_004140591.1 (RNA-binding protein 24 [Cucumis sativus] >KGN46345.1 hypothetical protein Csa_005255 [Cucumis sativus])

HSP 1 Score: 519 bits (1337), Expect = 2.23e-185
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 0


Query: 1   MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA
Sbjct: 1   MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120
           VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH
Sbjct: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120

Query: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180
           GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG
Sbjct: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180

Query: 181 GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGMQYPHLMQYPYLPQQHSSTGILS 240
           GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGMQYPHLMQYPYLPQQHSSTGILS
Sbjct: 181 GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGMQYPHLMQYPYLPQQHSSTGILS 240

Query: 241 LPGSNALGTTTSG 253
           LPGSNALGTTTSG
Sbjct: 241 LPGSNALGTTTSG 253

[Close]

BLAST of CsGy6G006770 vs. NCBI nr
Match: XP_008460001.1 (PREDICTED: RNA-binding protein 24-B [Cucumis melo])

HSP 1 Score: 516 bits (1329), Expect = 3.69e-184
Identity = 251/253 (99.21%), Postives = 252/253 (99.60%), Query Frame = 0


Query: 1   MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA
Sbjct: 1   MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120
           VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH
Sbjct: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120

Query: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180
           GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG
Sbjct: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180

Query: 181 GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGMQYPHLMQYPYLPQQHSSTGILS 240
           GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFG+QYPHLMQYPYLPQQH STGILS
Sbjct: 181 GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGSTGILS 240

Query: 241 LPGSNALGTTTSG 253
           LPGSNALGTTTSG
Sbjct: 241 LPGSNALGTTTSG 253

[Close]

BLAST of CsGy6G006770 vs. NCBI nr
Match: XP_038906691.1 (RNA-binding protein 24-B [Benincasa hispida])

HSP 1 Score: 512 bits (1318), Expect = 1.76e-182
Identity = 247/254 (97.24%), Postives = 253/254 (99.61%), Query Frame = 0


Query: 1   MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           MSQQRQFHNI+SSNN+SSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA
Sbjct: 1   MSQQRQFHNISSSNNNSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120
           VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH
Sbjct: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120

Query: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180
           GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG
Sbjct: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180

Query: 181 GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGMQYPHLMQYPYLPQQHSSTGILS 240
           GQQFSPYYSANG+SGPAGMFQNLYPYYAQSSQGYGFG+QYPHLMQYPYLPQQH STGILS
Sbjct: 181 GQQFSPYYSANGISGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGSTGILS 240

Query: 241 LPGSNALGTTTSGA 254
           LPGSNA+GTTT+GA
Sbjct: 241 LPGSNAIGTTTTGA 254

[Close]

BLAST of CsGy6G006770 vs. NCBI nr
Match: KAA0039913.1 (RNA-binding protein 24-B [Cucumis melo var. makuwa] >TYK24587.1 RNA-binding protein 24-B [Cucumis melo var. makuwa])

HSP 1 Score: 491 bits (1265), Expect = 1.57e-174
Identity = 243/253 (96.05%), Postives = 244/253 (96.44%), Query Frame = 0


Query: 1   MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA
Sbjct: 1   MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120
           VVITDKNTGRSK        DPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH
Sbjct: 61  VVITDKNTGRSK--------DPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120

Query: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180
           GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG
Sbjct: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180

Query: 181 GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGMQYPHLMQYPYLPQQHSSTGILS 240
           GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFG+QYPHLMQYPYLPQQH STGILS
Sbjct: 181 GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGSTGILS 240

Query: 241 LPGSNALGTTTSG 253
           LPGSNALGTTTSG
Sbjct: 241 LPGSNALGTTTSG 245

[Close]

BLAST of CsGy6G006770 vs. NCBI nr
Match: KAG7025354.1 (putative RNA-binding protein ARP1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 438 bits (1126), Expect = 2.21e-153
Identity = 216/254 (85.04%), Postives = 227/254 (89.37%), Query Frame = 0


Query: 1   MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           MSQ R FH+ N        S+GGQYNDTTFTKIFVGGLAWETQRHTMRR+FEQFGEILEA
Sbjct: 1   MSQPRPFHSNN--------SVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120
           VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP     QH
Sbjct: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP-----QH 120

Query: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180
           G GGRFRG SGIVTPPAYHVSSSSY+HQPTSQY FPLS YG++GYSQDRIYP+NYYGVYG
Sbjct: 121 GGGGRFRGPSGIVTPPAYHVSSSSYVHQPTSQYPFPLSAYGYSGYSQDRIYPMNYYGVYG 180

Query: 181 GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGMQYPHLMQYPYLPQQHSSTGILS 240
           GQQFSPYYSAN + GPAGMFQNLYPYYAQSSQGY FG+QYPHLMQYPYLPQQH STGILS
Sbjct: 181 GQQFSPYYSANAIPGPAGMFQNLYPYYAQSSQGYEFGVQYPHLMQYPYLPQQHGSTGILS 240

Query: 241 LPGSNALGTTTSGA 254
           LP S A GTT++GA
Sbjct: 241 LPVSTATGTTSAGA 241

[Close]

BLAST of CsGy6G006770 vs. ExPASy TrEMBL
Match: A0A0A0K998 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G087740 PE=4 SV=1)

HSP 1 Score: 519 bits (1337), Expect = 1.08e-185
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 0


Query: 1   MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA
Sbjct: 1   MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120
           VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH
Sbjct: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120

Query: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180
           GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG
Sbjct: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180

Query: 181 GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGMQYPHLMQYPYLPQQHSSTGILS 240
           GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGMQYPHLMQYPYLPQQHSSTGILS
Sbjct: 181 GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGMQYPHLMQYPYLPQQHSSTGILS 240

Query: 241 LPGSNALGTTTSG 253
           LPGSNALGTTTSG
Sbjct: 241 LPGSNALGTTTSG 253

[Close]

BLAST of CsGy6G006770 vs. ExPASy TrEMBL
Match: A0A1S3CBZ0 (RNA-binding protein 24-B OS=Cucumis melo OX=3656 GN=LOC103498947 PE=4 SV=1)

HSP 1 Score: 516 bits (1329), Expect = 1.79e-184
Identity = 251/253 (99.21%), Postives = 252/253 (99.60%), Query Frame = 0


Query: 1   MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA
Sbjct: 1   MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120
           VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH
Sbjct: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120

Query: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180
           GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG
Sbjct: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180

Query: 181 GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGMQYPHLMQYPYLPQQHSSTGILS 240
           GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFG+QYPHLMQYPYLPQQH STGILS
Sbjct: 181 GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGSTGILS 240

Query: 241 LPGSNALGTTTSG 253
           LPGSNALGTTTSG
Sbjct: 241 LPGSNALGTTTSG 253

[Close]

BLAST of CsGy6G006770 vs. ExPASy TrEMBL
Match: A0A5A7TA32 (RNA-binding protein 24-B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001330 PE=4 SV=1)

HSP 1 Score: 491 bits (1265), Expect = 7.60e-175
Identity = 243/253 (96.05%), Postives = 244/253 (96.44%), Query Frame = 0


Query: 1   MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA
Sbjct: 1   MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120
           VVITDKNTGRSK        DPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH
Sbjct: 61  VVITDKNTGRSK--------DPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120

Query: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180
           GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG
Sbjct: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180

Query: 181 GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGMQYPHLMQYPYLPQQHSSTGILS 240
           GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFG+QYPHLMQYPYLPQQH STGILS
Sbjct: 181 GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYLPQQHGSTGILS 240

Query: 241 LPGSNALGTTTSG 253
           LPGSNALGTTTSG
Sbjct: 241 LPGSNALGTTTSG 245

[Close]

BLAST of CsGy6G006770 vs. ExPASy TrEMBL
Match: A0A6J1KX91 (RNA-binding protein 38 OS=Cucurbita maxima OX=3661 GN=LOC111497969 PE=4 SV=1)

HSP 1 Score: 434 bits (1117), Expect = 2.42e-152
Identity = 215/254 (84.65%), Postives = 227/254 (89.37%), Query Frame = 0


Query: 1   MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           MSQQR FH+ N        S+GGQYNDTTFTKIFVGGLAWETQRHTMRR+FEQFGEILEA
Sbjct: 1   MSQQRPFHSNN--------SVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120
           VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP     QH
Sbjct: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP-----QH 120

Query: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180
           G GGR RG SGIV PPAYHVSSSSY+HQPT+QY FPLS YG++GYSQDRIYP+NYYGVYG
Sbjct: 121 GGGGRSRGPSGIVNPPAYHVSSSSYVHQPTTQYPFPLSAYGYSGYSQDRIYPMNYYGVYG 180

Query: 181 GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGMQYPHLMQYPYLPQQHSSTGILS 240
           GQQFSPYYSAN + GPAGMFQNLYPYYAQSSQGY FG+QYPHLMQYPYLPQQHSSTGILS
Sbjct: 181 GQQFSPYYSANVIPGPAGMFQNLYPYYAQSSQGYEFGVQYPHLMQYPYLPQQHSSTGILS 240

Query: 241 LPGSNALGTTTSGA 254
           LP S A GTT++GA
Sbjct: 241 LPVSTATGTTSAGA 241

[Close]

BLAST of CsGy6G006770 vs. ExPASy TrEMBL
Match: A0A6J1H998 (RNA-binding protein 24 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111461225 PE=4 SV=1)

HSP 1 Score: 434 bits (1117), Expect = 2.42e-152
Identity = 214/254 (84.25%), Postives = 226/254 (88.98%), Query Frame = 0


Query: 1   MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           MSQ R FH        S+ S+GGQYNDTTFTKIFVGGLAWETQRHTMRR+FEQFGEILEA
Sbjct: 1   MSQPRPFH--------SNYSVGGQYNDTTFTKIFVGGLAWETQRHTMRRFFEQFGEILEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQH 120
           VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP     QH
Sbjct: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP-----QH 120

Query: 121 GVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYG 180
           G GGRFRG SGIVTPPAYHVSSSSY+HQPT+QY FPLS YG++GYSQDRIYP+NYYGVYG
Sbjct: 121 GGGGRFRGPSGIVTPPAYHVSSSSYVHQPTTQYPFPLSAYGYSGYSQDRIYPMNYYGVYG 180

Query: 181 GQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGMQYPHLMQYPYLPQQHSSTGILS 240
           GQQFSPYYSAN + GPAGMFQNLYPYYAQSS GY FG+QYPHLMQYPYLPQQH STGILS
Sbjct: 181 GQQFSPYYSANAIPGPAGMFQNLYPYYAQSSHGYEFGVQYPHLMQYPYLPQQHGSTGILS 240

Query: 241 LPGSNALGTTTSGA 254
           LP S A GTT++GA
Sbjct: 241 LPVSTATGTTSAGA 241

[Close]

BLAST of CsGy6G006770 vs. TAIR 10
Match: AT2G46780.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 259.2 bits (661), Expect = 3.4e-69
Identity = 163/299 (54.52%), Postives = 190/299 (63.55%), Query Frame = 0


Query: 1   MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEA 60
           M+QQRQF     +NN++         DT  TKIFVGGLAWETQR TMRRYFEQFGEI+EA
Sbjct: 1   MAQQRQFQMEGGNNNTT---------DTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEA 60

Query: 61  VVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPT-PQ 120
           VVITDKNTGRSKGYGFVTFK+ +AA+RACQN +PVIDGRRANCNLA LGA KP PPT P+
Sbjct: 61  VVITDKNTGRSKGYGFVTFKEAEAAMRACQNMNPVIDGRRANCNLACLGAQKPRPPTSPR 120

Query: 121 HGVGGRFRGAS---GIVTP-PAYHVSSSS--YIHQP----TSQYSFPLSGYGFAGYSQDR 180
           HG  GRFR      G+V P P +  SSSS  ++HQ     T+Q+ FP S YGF+GYSQ+ 
Sbjct: 121 HGT-GRFRSPGSGVGLVAPSPQFRGSSSSSAFVHQQQQQHTAQFPFPYSTYGFSGYSQEG 180

Query: 181 IYPLNYYG--VYGGQQFSPYYSANGLSGPAGMFQNLYPYY---------------AQSSQ 240
           +YP+NYY   +YGGQQFSP Y  +  +G  GMF   YPYY                Q+  
Sbjct: 181 MYPMNYYNHHLYGGQQFSP-YMGHPSAGSTGMFHGFYPYYPQYNAAQSSNQAQAQVQAQH 240

Query: 241 GYGFGMQY-----PHLMQYPYLP--------QQHSS----TGILSLPGSNALGTTTSGA 255
             GF  QY     P L+QYPYLP        QQ SS      ILSLP S AL   +S +
Sbjct: 241 HQGFSFQYTAPPAPPLLQYPYLPHQPHFSSQQQFSSQQPPPPILSLPTSLALSLPSSSS 288

[Close]

BLAST of CsGy6G006770 vs. TAIR 10
Match: AT1G33470.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 177.9 bits (450), Expect = 1.0e-44
Identity = 106/218 (48.62%), Postives = 138/218 (63.30%), Query Frame = 0


Query: 27  DTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 86
           DTTFTK+FVGGLAWET + ++R YFEQFG+I+EAVVITDK++GRSKGYGFVTF DP+AA 
Sbjct: 3   DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62

Query: 87  RACQNPSPVIDGRRANCNLASLGAHKPHPPTPQHG-VGGRFRGASGIVTPPAYHVSSSSY 146
           +AC +P+PVIDGRRANCNLA+ G  +  P +P HG VGGR      + +P   H  +++ 
Sbjct: 63  KACVDPAPVIDGRRANCNLAAFGVQRSKPSSPIHGHVGGR---GMKVTSPFKTHFGTAAT 122

Query: 147 I---HQPTSQYSFPLSG-YGFAGYSQDRIYPLNYYGVYGGQQFS-PYYSANGLSG-PAGM 206
                 P S Y+ P +  +GF+ YS D  YP +YY VYGG     P Y +  ++G  A  
Sbjct: 123 AIPSPLPFSHYTLPYTNPFGFSSYSMDYNYPTSYYNVYGGATAQHPMYGSGPMTGVAAAP 182

Query: 207 FQNLYPYYAQSSQGYGFGMQYPHLMQYPYLPQQHSSTG 238
               YP Y Q ++G G    Y  L  YP     +S+ G
Sbjct: 183 AAGFYP-YLQFAEGNGPVTGYAPL-HYPNHMFHYSAPG 215

[Close]

BLAST of CsGy6G006770 vs. TAIR 10
Match: AT1G20880.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 173.7 bits (439), Expect = 1.9e-43
Identity = 105/236 (44.49%), Postives = 130/236 (55.08%), Query Frame = 0


Query: 7   FHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDK 66
           +H+I SS       L   + DTTFTK+FVGGLAWETQ  T+RR+F+Q+G+ILEAVVITDK
Sbjct: 3   YHSIPSSGFH---YLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDK 62

Query: 67  NTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP------------- 126
           NTGRSKGYGFVTF+DP+AA RAC +P+P+IDGRRANCNLASLG  +P             
Sbjct: 63  NTGRSKGYGFVTFRDPEAARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGR 122

Query: 127 -HPPTPQHGVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYS----FPLSGYGFAGYSQD 186
             PP+P  G          + +P   H  S  Y   PT  Y     +P   YG   Y  D
Sbjct: 123 VRPPSPYVG---------SVQSPRGLHFGSHPYHQPPTYNYQQGVVYP---YGVTPYGPD 182

Query: 187 RIYPLN--YYGVYGGQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGMQYPH 223
            +Y  +  +YG Y GQQ+   Y   G     G       +    + GY  G  Y H
Sbjct: 183 YMYSQSQGFYGPYMGQQYLQVYGVPGAVNSPGYQYGQLSHTIPGAHGYTAGQGYSH 223

[Close]

BLAST of CsGy6G006770 vs. TAIR 10
Match: AT1G20880.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 173.7 bits (439), Expect = 1.9e-43
Identity = 105/236 (44.49%), Postives = 130/236 (55.08%), Query Frame = 0


Query: 7   FHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDK 66
           +H+I SS       L   + DTTFTK+FVGGLAWETQ  T+RR+F+Q+G+ILEAVVITDK
Sbjct: 3   YHSIPSSGFH---YLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDK 62

Query: 67  NTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKP------------- 126
           NTGRSKGYGFVTF+DP+AA RAC +P+P+IDGRRANCNLASLG  +P             
Sbjct: 63  NTGRSKGYGFVTFRDPEAARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGR 122

Query: 127 -HPPTPQHGVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYS----FPLSGYGFAGYSQD 186
             PP+P  G          + +P   H  S  Y   PT  Y     +P   YG   Y  D
Sbjct: 123 VRPPSPYVG---------SVQSPRGLHFGSHPYHQPPTYNYQQGVVYP---YGVTPYGPD 182

Query: 187 RIYPLN--YYGVYGGQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGMQYPH 223
            +Y  +  +YG Y GQQ+   Y   G     G       +    + GY  G  Y H
Sbjct: 183 YMYSQSQGFYGPYMGQQYLQVYGVPGAVNSPGYQYGQLSHTIPGAHGYTAGQGYSH 223

[Close]

BLAST of CsGy6G006770 vs. TAIR 10
Match: AT1G33470.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 173.3 bits (438), Expect = 2.5e-43
Identity = 106/219 (48.40%), Postives = 138/219 (63.01%), Query Frame = 0


Query: 27  DTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAI 86
           DTTFTK+FVGGLAWET + ++R YFEQFG+I+EAVVITDK++GRSKGYGFVTF DP+AA 
Sbjct: 3   DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62

Query: 87  RACQNPSPVIDGRRANCNLASLGAHKPHPPTPQHG-VGGRFRGASGIVTPPAYHVSSSSY 146
           +AC +P+PVIDGRRANCNLA+ G  +  P +P HG VGGR      + +P   H  +++ 
Sbjct: 63  KACVDPAPVIDGRRANCNLAAFGVQRSKPSSPIHGHVGGR---GMKVTSPFKTHFGTAAT 122

Query: 147 I---HQPTSQYSFPLSG-YGFAGYSQDRIYPL-NYYGVYGGQQFS-PYYSANGLSG-PAG 206
                 P S Y+ P +  +GF+ YS D  YP  +YY VYGG     P Y +  ++G  A 
Sbjct: 123 AIPSPLPFSHYTLPYTNPFGFSSYSMDYNYPTQSYYNVYGGATAQHPMYGSGPMTGVAAA 182

Query: 207 MFQNLYPYYAQSSQGYGFGMQYPHLMQYPYLPQQHSSTG 238
                YP Y Q ++G G    Y  L  YP     +S+ G
Sbjct: 183 PAAGFYP-YLQFAEGNGPVTGYAPL-HYPNHMFHYSAPG 216

The following BLAST results are available for this feature:

BLAST of CsGy6G006770 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1S3	2.2e-28	38.89	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
Q9BX46	1.4e-27	40.00	RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1	[more]
Q9H0Z9	1.2e-26	62.64	RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2	[more]
D3Z4I3	1.6e-26	39.07	RNA-binding protein 24 OS=Mus musculus OX=10090 GN=Rbm24 PE=1 SV=1	[more]
Q76LC6	2.0e-26	42.57	RNA-binding protein 24 OS=Danio rerio OX=7955 GN=rbm24 PE=2 SV=1	[more]

BLAST of CsGy6G006770 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140591.1	2.23e-185	100.00	RNA-binding protein 24 [Cucumis sativus] >KGN46345.1 hypothetical protein Csa_00...	[more]
XP_008460001.1	3.69e-184	99.21	PREDICTED: RNA-binding protein 24-B [Cucumis melo]	[more]
XP_038906691.1	1.76e-182	97.24	RNA-binding protein 24-B [Benincasa hispida]	[more]
KAA0039913.1	1.57e-174	96.05	RNA-binding protein 24-B [Cucumis melo var. makuwa] >TYK24587.1 RNA-binding prot...	[more]
KAG7025354.1	2.21e-153	85.04	putative RNA-binding protein ARP1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of CsGy6G006770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K998	1.08e-185	100.00	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G087740 PE=4 SV...	[more]
A0A1S3CBZ0	1.79e-184	99.21	RNA-binding protein 24-B OS=Cucumis melo OX=3656 GN=LOC103498947 PE=4 SV=1	[more]
A0A5A7TA32	7.60e-175	96.05	RNA-binding protein 24-B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A6J1KX91	2.42e-152	84.65	RNA-binding protein 38 OS=Cucurbita maxima OX=3661 GN=LOC111497969 PE=4 SV=1	[more]
A0A6J1H998	2.42e-152	84.25	RNA-binding protein 24 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111461225 ...	[more]

BLAST of CsGy6G006770 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46780.1	3.4e-69	54.52	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G33470.2	1.0e-44	48.62	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.1	1.9e-43	44.49	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.2	1.9e-43	44.49	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G33470.1	2.5e-43	48.40	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 32..104 e-value: 2.9E-24 score: 96.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 33..90 e-value: 3.7E-17 score: 61.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 31..108 score: 16.517189
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..125 e-value: 1.3E-25 score: 92.0
None	No IPR available	PANTHER	PTHR11176:SF33	SUBFAMILY NOT NAMED	coord: 1..253
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 31..106 e-value: 2.72697E-46 score: 147.377
IPR037366	BOULE/DAZ family	PANTHER	PTHR11176	BOULE-RELATED	coord: 1..253
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 27..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G006770.2	CsGy6G006770.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding