
CsGy6G006770 (gene) Cucumber (Gy14) v2.1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTAGAGTCTATGGTTAGGAAGGAAGAAGAATTAGTTTAGGAATGTCTTGAATGTGTTGATTCGAATACAGCGAAGCAAATGCTAATCCAGACCAATCCAGCAAATATAATAATAACAACGAAAAAGAGTTTAAATATTCTATTTTTGGTATTAGCAAAAATCTCTCTCGAGGCTCTGTCGTCGTGCGTGGGAACCCACTAGCAGCTTTTTTGTCTTTCTCTCATTTTCTCTCTATCTCTCTTCTTCTTCTTCTTCGTCGTCCTCGATTATCATATTGTCTTTTGATATTATATAATCTATAATTCTTCTATATATATATATATATGTACATTACATCTCATTACAAAACAAAACAAAAGGGGGTTTCTTTTTTTTTTCTTTTTTTTCTCTCTCCTTTTTTTACCCTCAAAAACAGTAATGATTTTCTCGTTAAGGGTATCATTGTTGGAGGAATCTGGGTAGTTGTTTTTGTTTGTGTATGTGGAGAAAAGGGTAGTTATTAGAAAAAAGAAAAAAACAAAAACCATTCTTTTTCCTTCTCCTTCTCTTGAGAAAGAGAAAAAGATGGGAGTCCATTGATTTGGTCTTGAAAACATTTGTTTGTTTTTTGGGGTTAAGATTTCTTTGCATTCTAGACTAATTTTGTGCTTTTTGGGGAGAGGCATATTTTTTTTTTTGTGGTTCTCTCTCTATTTTTGTTTTTCCCTTATGTCTCAACAGAGGCAATTTCATAACATTAACAGCAGCAATAATAGCAGCAGCCTTAGCCTTGGAGGTCAATACAATGATACCACTTTCACCAAAATTTTTGTTGGAGGTTTGGCTTGGGAGACTCAAAGACATACCATGAGAAGGTATTTTGAACAATTTGGTGAAATCTTGGAAGCTGTTGTAATTACTGACAAAAACACTGGCAGATCCAAGGGTTATGGCTTTGTAAGTCCCTTTTTCTTTTCCCTTCTTCTTGTCAAAATGGGGATTTTGATTTTGATTTTGATTTCTGGGATTTGATTGATTTCTTTTTGTTTTTAGGTAACATTTAAAGATCCTGATGCTGCCATTAGAGCCTGTCAAAACCCTTCGCCTGTTATTGATGGAAGAAGGGCTAACTGTAATCTTGCTTCTCTTGGTGCTCATAAGCCACATCCTCCCACTCCTCAACATGGTTCTTCTTGATTCTTTTTCATCTGTACCCTTTTTCTTTGTTAACTAAATGCTTTGATCTCTTCAATGGATTATAAAATTTCCCACATGCAATGTGTTTGTTTTTTTCCATTGCTTTCTTTGAATTCTCACCTTCAATGGAGGAGGTTGAATCTGCATTTTGAAGGACATTTTTTTGTCTTTTTGGCTGTGAAACATATGAAATCTAAAACAAACATAAGGGGAGTAATATTTTCTCAAAAGTAACCACAAAGTTTGTGGAACAAATTTGTAGGTGTTGGTGGAAGATTTAGAGGTGCATCTGGGATTGTGACACCTCCTGCTTATCATGTTTCTTCATCATCTTATATTCATCAACCCACTAGTCAATACTCATTCCCTCTTTCAGGATATGGGTAAGGTTGAAAAACAAGAATTATAAATGGGATCAAACAAGACCCAATTTTCCCATTATCCCCTTTTATCGATTAATTAATATAATACTGTCCTTTTTGTTTTTTCTTTTGGCCTCATTTCAGGTTTGCTGGATATTCACAAGACAGAATTTATCCATTGGTGTGAATCTGTGTTTTTATGTCTATATGAGTGTTGTTTCTTTTTGGTTTGATGTTGTTTTGTGTTTGTGATCTTCTTGGTGGAATTGATTTTGATTTAAGCATTGTGTTTTCGATGCAGAACTATTACGGTGTTTACGGGGGCCAACAGTTTTCTCCTTATTACTCTGCGAATGGGCTCTCAGGACCGGCTGGAATGTTTCAAAATCTCTATCCGTATTACGCTCAAAGTAGCCAGGGGTACGGGTTTGGAATGCAATATCCACACTTAATGCAGTACCCATATCTTCCTCAGCAGCACAGTTCGACGGGTATCCTATCACTTCCTGGCTCGAACGCATTGGGAACGACAACTTCAGGTGCTAAATGAAATATAAATGCTTGTAATCTAATCCATTAGTATGTCATTGATGTTTGAGAATTGGTGTCTGAAGAATGTCATTTTGATGTTGGTTTCAAAAGTGGTTTGGAGATTTATGTGAAAAATGTAACAGGTACAACAGCAACAACGATAACAGCGGTTGGATCAGGGCCTTCACAAGCTTCACCTGCAGTAGCATCTGAACCAAATTCGTCGGAGTTAATTTCAACTGGATGATGATAAAGTCTTTCTTTATCACACGCTAACCACGTAGACAAAGCTTGGAAAACAAAACTGTCTGAGGGAATACTGAATAACAATGGAGAGGGGGGCAAGTTTCTTAAGTCGTGTGATTCGATAAGAAGAAAAAGGAATCCATGTTCCAGCATCATCGAGTCGTTCGTTAAAAGTCGGTAACAAGCATATCCCAGAGATGAATTACAAAGTTGGTTCAGTAACATATCATATCCATCTCTATCAACATTATTTTATGTTTGGTCCAGTGTATTTGAAGAGGAGTCTACAAGTAGTTTGTTTAGAACTAGGTGAAGAATTTTATTCATTCATGTATTTTAAGCGAAAAGACTGGGAGGAACACGAAAGAAGGCGCTTTCGATTCTCCTTGTCTTGACGATCGTGTTGGGGAAGCATGGAAGCATCCTATGACACACTCTTGTTTATATAATTTAACAGTGAAATGGTTCAAAAGATTGATTTTATGTCTTTTGAGCATCACAATTTATGGTTGGTCAACATGGAAAGGCAAGCTCCAAAAAGCTTAGCTTGGTTGATTTGTAATTTATGGATCTTCTTTTGATTAAAATACTTTTGGATTAGTTAGAACA GTAGAGTCTATGGTTAGGAAGGAAGAAGAATTAGTTTAGGAATGTCTTGAATGTGTTGATTCGAATACAGCGAAGCAAATGCTAATCCAGACCAATCCAGCAAATATAATAATAACAACGAAAAAGAGTTTAAATATTCTATTTTTGGTATTAGCAAAAATCTCTCTCGAGGCTCTGTCGTCGTGCGTGGGAACCCACTAGCAGCTTTTTTGTCTTTCTCTCATTTTCTCTCTATCTCTCTTCTTCTTCTTCTTCGTCGTCCTCGATTATCATATTGTCTTTTGATATTATATAATCTATAATTCTTCTATATATATATATATATGTACATTACATCTCATTACAAAACAAAACAAAAGGGGGTTTCTTTTTTTTTTCTTTTTTTTCTCTCTCCTTTTTTTACCCTCAAAAACAGTAATGATTTTCTCGTTAAGGGTATCATTGTTGGAGGAATCTGGGTAGTTGTTTTTGTTTGTGTATGTGGAGAAAAGGGTAGTTATTAGAAAAAAGAAAAAAACAAAAACCATTCTTTTTCCTTCTCCTTCTCTTGAGAAAGAGAAAAAGATGGGAGTCCATTGATTTGGTCTTGAAAACATTTGTTTGTTTTTTGGGGTTAAGATTTCTTTGCATTCTAGACTAATTTTGTGCTTTTTGGGGAGAGGCATATTTTTTTTTTTGTGGTTCTCTCTCTATTTTTGTTTTTCCCTTATGTCTCAACAGAGGCAATTTCATAACATTAACAGCAGCAATAATAGCAGCAGCCTTAGCCTTGGAGGTCAATACAATGATACCACTTTCACCAAAATTTTTGTTGGAGGTTTGGCTTGGGAGACTCAAAGACATACCATGAGAAGGTATTTTGAACAATTTGGTGAAATCTTGGAAGCTGTTGTAATTACTGACAAAAACACTGGCAGATCCAAGGGTTATGGCTTTGTAACATTTAAAGATCCTGATGCTGCCATTAGAGCCTGTCAAAACCCTTCGCCTGTTATTGATGGAAGAAGGGCTAACTGTAATCTTGCTTCTCTTGGTGCTCATAAGCCACATCCTCCCACTCCTCAACATGGTGTTGGTGGAAGATTTAGAGGTGCATCTGGGATTGTGACACCTCCTGCTTATCATGTTTCTTCATCATCTTATATTCATCAACCCACTAGTCAATACTCATTCCCTCTTTCAGGATATGGGTTTGCTGGATATTCACAAGACAGAATTTATCCATTGAACTATTACGGTGTTTACGGGGGCCAACAGTTTTCTCCTTATTACTCTGCGAATGGGCTCTCAGGACCGGCTGGAATGTTTCAAAATCTCTATCCGTATTACGCTCAAAGTAGCCAGGGGTACGGGTTTGGAATGCAATATCCACACTTAATGCAGTACCCATATCTTCCTCAGCAGCACAGTTCGACGGGTATCCTATCACTTCCTGGCTCGAACGCATTGGGAACGACAACTTCAGGTGCTAAATGAAATATAAATGCTTGTAATCTAATCCATTAGTATGTCATTGATGTTTGAGAATTGGTGTCTGAAGAATGTCATTTTGATGTTGGTTTCAAAAGTGGTTTGGAGATTTATGTGAAAAATGTAACAGGTACAACAGCAACAACGATAACAGCGGTTGGATCAGGGCCTTCACAAGCTTCACCTGCAGTAGCATCTGAACCAAATTCGTCGGAGTTAATTTCAACTGGATGATGATAAAGTCTTTCTTTATCACACGCTAACCACGTAGACAAAGCTTGGAAAACAAAACTGTCTGAGGGAATACTGAATAACAATGGAGAGGGGGGCAAGTTTCTTAAGTCGTGTGATTCGATAAGAAGAAAAAGGAATCCATGTTCCAGCATCATCGAGTCGTTCGTTAAAAGTCGGTAACAAGCATATCCCAGAGATGAATTACAAAGTTGGTTCAGTAACATATCATATCCATCTCTATCAACATTATTTTATGTTTGGTCCAGTGTATTTGAAGAGGAGTCTACAAGTAGTTTGTTTAGAACTAGGTGAAGAATTTTATTCATTCATGTATTTTAAGCGAAAAGACTGGGAGGAACACGAAAGAAGGCGCTTTCGATTCTCCTTGTCTTGACGATCGTGTTGGGGAAGCATGGAAGCATCCTATGACACACTCTTGTTTATATAATTTAACAGTGAAATGGTTCAAAAGATTGATTTTATGTCTTTTGAGCATCACAATTTATGGTTGGTCAACATGGAAAGGCAAGCTCCAAAAAGCTTAGCTTGGTTGATTTGTAATTTATGGATCTTCTTTTGATTAAAATACTTTTGGATTAGTTAGAACA ATGTCTCAACAGAGGCAATTTCATAACATTAACAGCAGCAATAATAGCAGCAGCCTTAGCCTTGGAGGTCAATACAATGATACCACTTTCACCAAAATTTTTGTTGGAGGTTTGGCTTGGGAGACTCAAAGACATACCATGAGAAGGTATTTTGAACAATTTGGTGAAATCTTGGAAGCTGTTGTAATTACTGACAAAAACACTGGCAGATCCAAGGGTTATGGCTTTGTAACATTTAAAGATCCTGATGCTGCCATTAGAGCCTGTCAAAACCCTTCGCCTGTTATTGATGGAAGAAGGGCTAACTGTAATCTTGCTTCTCTTGGTGCTCATAAGCCACATCCTCCCACTCCTCAACATGGTGTTGGTGGAAGATTTAGAGGTGCATCTGGGATTGTGACACCTCCTGCTTATCATGTTTCTTCATCATCTTATATTCATCAACCCACTAGTCAATACTCATTCCCTCTTTCAGGATATGGGTTTGCTGGATATTCACAAGACAGAATTTATCCATTGAACTATTACGGTGTTTACGGGGGCCAACAGTTTTCTCCTTATTACTCTGCGAATGGGCTCTCAGGACCGGCTGGAATGTTTCAAAATCTCTATCCGTATTACGCTCAAAGTAGCCAGGGGTACGGGTTTGGAATGCAATATCCACACTTAATGCAGTACCCATATCTTCCTCAGCAGCACAGTTCGACGGGTATCCTATCACTTCCTGGCTCGAACGCATTGGGAACGACAACTTCAGGTGCTAAATGA MSQQRQFHNINSSNNSSSLSLGGQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPTPQHGVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYGVYGGQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGMQYPHLMQYPYLPQQHSSTGILSLPGSNALGTTTSGAK* Homology
BLAST of CsGy6G006770 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1) HSP 1 Score: 127.5 bits (319), Expect = 2.2e-28 Identity = 91/234 (38.89%), Postives = 117/234 (50.00%), Query Frame = 0
BLAST of CsGy6G006770 vs. ExPASy Swiss-Prot
Match: Q9BX46 (RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1) HSP 1 Score: 124.8 bits (312), Expect = 1.4e-27 Identity = 86/215 (40.00%), Postives = 115/215 (53.49%), Query Frame = 0
BLAST of CsGy6G006770 vs. ExPASy Swiss-Prot
Match: Q9H0Z9 (RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2) HSP 1 Score: 121.7 bits (304), Expect = 1.2e-26 Identity = 57/91 (62.64%), Postives = 72/91 (79.12%), Query Frame = 0
BLAST of CsGy6G006770 vs. ExPASy Swiss-Prot
Match: D3Z4I3 (RNA-binding protein 24 OS=Mus musculus OX=10090 GN=Rbm24 PE=1 SV=1) HSP 1 Score: 121.3 bits (303), Expect = 1.6e-26 Identity = 84/215 (39.07%), Postives = 114/215 (53.02%), Query Frame = 0
BLAST of CsGy6G006770 vs. ExPASy Swiss-Prot
Match: Q76LC6 (RNA-binding protein 24 OS=Danio rerio OX=7955 GN=rbm24 PE=2 SV=1) HSP 1 Score: 120.9 bits (302), Expect = 2.0e-26 Identity = 86/202 (42.57%), Postives = 109/202 (53.96%), Query Frame = 0
BLAST of CsGy6G006770 vs. NCBI nr
Match: XP_004140591.1 (RNA-binding protein 24 [Cucumis sativus] >KGN46345.1 hypothetical protein Csa_005255 [Cucumis sativus]) HSP 1 Score: 519 bits (1337), Expect = 2.23e-185 Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 0
BLAST of CsGy6G006770 vs. NCBI nr
Match: XP_008460001.1 (PREDICTED: RNA-binding protein 24-B [Cucumis melo]) HSP 1 Score: 516 bits (1329), Expect = 3.69e-184 Identity = 251/253 (99.21%), Postives = 252/253 (99.60%), Query Frame = 0
BLAST of CsGy6G006770 vs. NCBI nr
Match: XP_038906691.1 (RNA-binding protein 24-B [Benincasa hispida]) HSP 1 Score: 512 bits (1318), Expect = 1.76e-182 Identity = 247/254 (97.24%), Postives = 253/254 (99.61%), Query Frame = 0
BLAST of CsGy6G006770 vs. NCBI nr
Match: KAA0039913.1 (RNA-binding protein 24-B [Cucumis melo var. makuwa] >TYK24587.1 RNA-binding protein 24-B [Cucumis melo var. makuwa]) HSP 1 Score: 491 bits (1265), Expect = 1.57e-174 Identity = 243/253 (96.05%), Postives = 244/253 (96.44%), Query Frame = 0
BLAST of CsGy6G006770 vs. NCBI nr
Match: KAG7025354.1 (putative RNA-binding protein ARP1 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 438 bits (1126), Expect = 2.21e-153 Identity = 216/254 (85.04%), Postives = 227/254 (89.37%), Query Frame = 0
BLAST of CsGy6G006770 vs. ExPASy TrEMBL
Match: A0A0A0K998 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G087740 PE=4 SV=1) HSP 1 Score: 519 bits (1337), Expect = 1.08e-185 Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 0
BLAST of CsGy6G006770 vs. ExPASy TrEMBL
Match: A0A1S3CBZ0 (RNA-binding protein 24-B OS=Cucumis melo OX=3656 GN=LOC103498947 PE=4 SV=1) HSP 1 Score: 516 bits (1329), Expect = 1.79e-184 Identity = 251/253 (99.21%), Postives = 252/253 (99.60%), Query Frame = 0
BLAST of CsGy6G006770 vs. ExPASy TrEMBL
Match: A0A5A7TA32 (RNA-binding protein 24-B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001330 PE=4 SV=1) HSP 1 Score: 491 bits (1265), Expect = 7.60e-175 Identity = 243/253 (96.05%), Postives = 244/253 (96.44%), Query Frame = 0
BLAST of CsGy6G006770 vs. ExPASy TrEMBL
Match: A0A6J1KX91 (RNA-binding protein 38 OS=Cucurbita maxima OX=3661 GN=LOC111497969 PE=4 SV=1) HSP 1 Score: 434 bits (1117), Expect = 2.42e-152 Identity = 215/254 (84.65%), Postives = 227/254 (89.37%), Query Frame = 0
BLAST of CsGy6G006770 vs. ExPASy TrEMBL
Match: A0A6J1H998 (RNA-binding protein 24 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111461225 PE=4 SV=1) HSP 1 Score: 434 bits (1117), Expect = 2.42e-152 Identity = 214/254 (84.25%), Postives = 226/254 (88.98%), Query Frame = 0
BLAST of CsGy6G006770 vs. TAIR 10
Match: AT2G46780.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 259.2 bits (661), Expect = 3.4e-69 Identity = 163/299 (54.52%), Postives = 190/299 (63.55%), Query Frame = 0
BLAST of CsGy6G006770 vs. TAIR 10
Match: AT1G33470.2 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 177.9 bits (450), Expect = 1.0e-44 Identity = 106/218 (48.62%), Postives = 138/218 (63.30%), Query Frame = 0
BLAST of CsGy6G006770 vs. TAIR 10
Match: AT1G20880.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 173.7 bits (439), Expect = 1.9e-43 Identity = 105/236 (44.49%), Postives = 130/236 (55.08%), Query Frame = 0
BLAST of CsGy6G006770 vs. TAIR 10
Match: AT1G20880.2 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 173.7 bits (439), Expect = 1.9e-43 Identity = 105/236 (44.49%), Postives = 130/236 (55.08%), Query Frame = 0
BLAST of CsGy6G006770 vs. TAIR 10
Match: AT1G33470.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 173.3 bits (438), Expect = 2.5e-43 Identity = 106/219 (48.40%), Postives = 138/219 (63.01%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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