CsGy6G006710 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G006710
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Sep15_SelM domain-containing protein
Location	Gy14Chr6: 5775050 .. 5778960 (-)
RNA-Seq Expression	CsGy6G006710
Synteny	CsGy6G006710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTTTGTTATTTGATTCAACTTTTTAAAATTTAATCACATTTGGTTGCTTTAATTACGTTTTATTTTTATTGATTTTCTACCATATCATGGAAAGATTTATTTCAAATCGAACTTGTGAAAAGGTGAAAATATGAACATGTAGTTAAAAATTGGATTAAGGAAAATTGACCCAATGGGTCAAAATAAAATAACGAAAAGGGCTGTTTCTTCAAATTTGAAGTTAAAAATTCGTCTTTTGTCGAGAGAGAGAGTTTTCCAATCGTCCGTAGGCTTCGCCTTTTCACCCTCAGTCGCCGGCGACAACAGAGATGCAGCTTCTCCCCGGAGTATGGAATTCCGCTATCGCGGTGACGGTAGCGTTAACTGCGACGGCGATCATTTTCATCTCGTCAATGCCGTTGGTTTGGTCAAAGGAGCAACTCAGCTCGAGGGAATGTGAGGATCTAGGTTTCACCGGCCTTGCTCTCTGTTCTGATTGTCACACTTTAGCTGAATATATCAAAGATCAAGGTGACGCGTTCAATTCAGTGGTGTTTCTTACACTAATTCTTGATTCGGTTTTGAATTTACATCTTTATCACTGCATTTCTTCCGTTCTCGTAAATTAGCAGCATCTTATTGGATTTTGTTCGCTTGTTTTTTTTATTGAACAATTGATTGGTCGTCTTGTGGGTTGTTTTATTTGTGTATCTTTTTTGCTTGATTTGGATTTTGGATTTCTGGGTTACTTGATTATAGTCTGACGTGTGAAGTGTTGGTTTTAATTTCGATATTTTCAATCAATTTCTTAGTATTGTGGATAGAGTTTGTTCATATTAGTTCATATTTTGTTCAAAGAGACGATAGTGATGAGTTCAGTGATAGAGTTTAGGTCCTACTACTTTGATCGTATAGGAATTTGTTAGGGAAGATGGTTCCAGAAATTCTGATGTAATAACTCACTCTTTTTTCAAAAGATTACAAAATTGTTTCTATGGGAAGAAAAAAGTTCTCAACTTTTAAAAGGGATAGACTTATCTTGTTCCTCATGCAATTTGTCGATTGTGTTTTTCAGAAAACACGTATCGTGTCTTTCTGATAAGTCGTAATTTGAATGCAATTAGTGATTGTTAGTGCTATTCCTTTTGGCAACTTCTTTTTTTCGCAATGTCCTTTATTCACAAGTGGAAATGGCTTCATGACTTTCCCACACTATTTTGAGAAACAACTGTTTGTAATTTTAAAATAATGTTTTGTGAAAATATCTTCAACTGTTTTTAGAAAGTGGTAAACTTATTTTTTCTAGTTTGTTTTCACATACATCTATTTCTTTTAGTTAAGTTGAAGATATTAGACACAATCCTCATGCCCAGATTCGTACTGCAGAATTAGTGTCGGACTGTTTAAAGTGTTGTGCCGAGGATTCTGATGATGCCACGAGTAAGGTACGTCATAAACATGTTGATTTCTTCAAGGGGAATCAATGAAATCTTGTTTCTCCCCCAAAAATTTAATTATCTGACTATTCCATTTGTTTTTATTAACATATGACACTACTAAACTGCATGCTTGTACATCCCTTTGGTAGATTTGTCAATGTAAAACACATTAGTTCAAGAGATATAATTGTCACGGCTATGCATCAAAACAAGGTTTCAGTAAACAAGAGAAACTAACTCATCTTTAGAAAAGGATAATTTAAGGAATGTGCAACACTTTATCAATGCATATCACAACCCTATTGAAAGTGGGAGAGTTTAGAAATACTTGGCTCATCATTGAACTCTAGTGTACCCTATTCCATATTGAGTGTACATATCCATAGTATCATATTCTTTTATCAGTGTGTCAAACCTCCAGACAGATTCTCCAAATTTCCACACTCGATAGGAGACGATTACTTATTATAGTATTTTCCCTCTTCCATTTAGCTCTATACCACTCCATGGTGTTACAGCGACCACTGCTTTTTATCCTCATGAACTCCCCTTTTTGAGATGGAGTATTGTAGCATGCTTGCTCCTTTGGTATCTCGTGGGAAGTGTATCTCAAGAAGAATAGTGGGATATGTATCTCGAGAAGAATAGTAAGACTTTTAGGGGAGCTGAGATGTCCGTTACTTGGACTTCTTATAACTATTAGTTTAGTCTTATTCTTTTTCTTATTAGTGTCTATTCTGTAAGTTGTTAAGGAGTCCTTTTGGGAGGCTTGGTTTTTTTTGTCTCAATATGTTCTTTCATTTATCTTCACGAAAGCTTGGTTTCCAAAAATACCATTAAAAGTCCAAGAAACGTTCTTTCAAATCCTGCTAGTGAGCTCACACCAAATATTCCAGAAAAATGCTTTGTTGATGGCTGGATAAAGTCCTCTTATAACAAAAAGTATGCCCCCACAAGAACCAAAGCCAATATGTCATAATATTACCAGGGAGAAATGTCCGATATACATCTAGAATTTAGAGCTTCTCCAAGAGATTGAGTATTCAGTTCCACCCTTATTCAAATTCAGTACTCTTTTGTTGATTGTATTTCATAACTAATTTGCTTATTAACGATGAAATCCAATTCACTAAGTTCACTGACTGCAGATAACTTATTCTGGTGCCGTGCTGGAGGTCTGCATGAGAAAGCTAGTTTTCTATCCTGAAATTGTTGGCTTCATTGAAGACGATAAGGATCAATTCCCTTCAGTTAAGGTTCAATATACCTTCAACTCTCCACCGAAGCTGATTTTGCTGGATGATAAGGGCCAGCATAAAGAAAGCATCAGGTAACTTCTACTTTTTCAAGTCACTTAGTTATAATAATAATCTCTAGAAGAATGTTTAGAGTGATGAGTTAGTCAGTGTACATATAACTAATCTTAGGAGTTGTAAAGCTTTGAGTTAAGCTGAGTTGAGTTTTGAAATCTAAAGTTAATAGGTCGGAGTTCGAGAGTTTGTGTTTGGAGTGTAGAGTTATAAAATGAAGTTTTTCGATAAATGTGCAAACTTCAATTATGAGTAGTTGATATAACATCAACTTATGAAGTCGATGGGCCAAGCACTCCTTTATATACGAAATGAATGAAGATTGTGTTTGAGGAGGTTGAGATGCTGAATATAGCGATATAGAATTTACTTTAGCTTAATGATAACCTCGATGTATAAAAACGTTTGATATTTTATTATTTTTTAAAACTTTTGCAGGATTGATAATTGGAAACGAGAACATTTTTTGCAATTCCTGCAAGAGAAGGTTAAGCGATCTTCAGCAATTTAAGGTTCTCTCACCTTTTTCTTTTTTTTTTTTTAATTTTAAATTTTAGGTTACATCTCTTAATCAATGTAAAAAACTTGTTGAATTTGAATGAAACTATTATCAGCCAGAAAAAGAAGAAAGAAAGAAAAAGAATTGAGGTGAGTGAACACTGGATTTTGTGAATTTCAAGGTTAGCAGTGGAAATAGTTCTGATTTCCTTTTGTCTAAATCTTTTACTGGAGGAAGACACACCTTTCATCCGGGAAACCAATACATTTTGAACGTAATGGAATGAATTTGTCGTATAACGTAATTCTAGATCTATGTTTGGACTGACCGTCTTGGAACCAATTTGCAATACCAAACTTACTATGTTTTCATGATTCTATTTTCCTGCGCTCATTTTAACCTCTTAAATTTTCATGCTGATTATTGTAAAATTTTAAATTTATTTGGTTATGGAAATTTTGTTAGAGAAAATTTTGTTTATGGAGATTTAGAACTTTATCTTTGAGTGAAAGTTATTACAACCATATAGGGACTGTTATTACAACTATTTAGGACTGTTATTACAACTATTTAGGGTTTAAGTTAATGCAACTATCGAAAATTTAAAGGTGAAAATGAATATTTTTCAATATTTAGATTAAAAGGACGAACTCATCAAAATTCAGAAATGTAATTAATAAAT

mRNA sequence

GTTTTTGTTATTTGATTCAACTTTTTAAAATTTAATCACATTTGGTTGCTTTAATTACGTTTTATTTTTATTGATTTTCTACCATATCATGGAAAGATTTATTTCAAATCGAACTTGTGAAAAGGTGAAAATATGAACATGTAGTTAAAAATTGGATTAAGGAAAATTGACCCAATGGGTCAAAATAAAATAACGAAAAGGGCTGTTTCTTCAAATTTGAAGTTAAAAATTCGTCTTTTGTCGAGAGAGAGAGTTTTCCAATCGTCCGTAGGCTTCGCCTTTTCACCCTCAGTCGCCGGCGACAACAGAGATGCAGCTTCTCCCCGGAGTATGGAATTCCGCTATCGCGGTGACGGTAGCGTTAACTGCGACGGCGATCATTTTCATCTCGTCAATGCCGTTGGTTTGGTCAAAGGAGCAACTCAGCTCGAGGGAATGTGAGGATCTAGGTTTCACCGGCCTTGCTCTCTGTTCTGATTGTCACACTTTAGCTGAATATATCAAAGATCAAGAATTAGTGTCGGACTGTTTAAAGTGTTGTGCCGAGGATTCTGATGATGCCACGAGTAAGATAACTTATTCTGGTGCCGTGCTGGAGGTCTGCATGAGAAAGCTAGTTTTCTATCCTGAAATTGTTGGCTTCATTGAAGACGATAAGGATCAATTCCCTTCAGTTAAGGTTCAATATACCTTCAACTCTCCACCGAAGCTGATTTTGCTGGATGATAAGGGCCAGCATAAAGAAAGCATCAGGATTGATAATTGGAAACGAGAACATTTTTTGCAATTCCTGCAAGAGAAGGTTAAGCGATCTTCAGCAATTTAAGGTTCTCTCACCTTTTTCTTTTTTTTTTTTTAATTTTAAATTTTAGGTTACATCTCTTAATCAATGTAAAAAACTTGTTGAATTTGAATGAAACTATTATCAGCCAGAAAAAGAAGAAAGAAAGAAAAAGAATTGAGGTGAGTGAACACTGGATTTTGTGAATTTCAAGGTTAGCAGTGGAAATAGTTCTGATTTCCTTTTGTCTAAATCTTTTACTGGAGGAAGACACACCTTTCATCCGGGAAACCAATACATTTTGAACGTAATGGAATGAATTTGTCGTATAACGTAATTCTAGATCTATGTTTGGACTGACCGTCTTGGAACCAATTTGCAATACCAAACTTACTATGTTTTCATGATTCTATTTTCCTGCGCTCATTTTAACCTCTTAAATTTTCATGCTGATTATTGTAAAATTTTAAATTTATTTGGTTATGGAAATTTTGTTAGAGAAAATTTTGTTTATGGAGATTTAGAACTTTATCTTTGAGTGAAAGTTATTACAACCATATAGGGACTGTTATTACAACTATTTAGGACTGTTATTACAACTATTTAGGGTTTAAGTTAATGCAACTATCGAAAATTTAAAGGTGAAAATGAATATTTTTCAATATTTAGATTAAAAGGACGAACTCATCAAAATTCAGAAATGTAATTAATAAAT

Coding sequence (CDS)

ATGCAGCTTCTCCCCGGAGTATGGAATTCCGCTATCGCGGTGACGGTAGCGTTAACTGCGACGGCGATCATTTTCATCTCGTCAATGCCGTTGGTTTGGTCAAAGGAGCAACTCAGCTCGAGGGAATGTGAGGATCTAGGTTTCACCGGCCTTGCTCTCTGTTCTGATTGTCACACTTTAGCTGAATATATCAAAGATCAAGAATTAGTGTCGGACTGTTTAAAGTGTTGTGCCGAGGATTCTGATGATGCCACGAGTAAGATAACTTATTCTGGTGCCGTGCTGGAGGTCTGCATGAGAAAGCTAGTTTTCTATCCTGAAATTGTTGGCTTCATTGAAGACGATAAGGATCAATTCCCTTCAGTTAAGGTTCAATATACCTTCAACTCTCCACCGAAGCTGATTTTGCTGGATGATAAGGGCCAGCATAAAGAAAGCATCAGGATTGATAATTGGAAACGAGAACATTTTTTGCAATTCCTGCAAGAGAAGGTTAAGCGATCTTCAGCAATTTAA

Protein sequence

MQLLPGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFPSVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI*

Homology

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BLAST of CsGy6G006710 vs. ExPASy Swiss-Prot
Match: A1Z623 (Selenoprotein F OS=Sus scrofa OX=9823 GN=SELENOF PE=2 SV=2)

HSP 1 Score: 97.1 bits (240), Expect = 2.1e-19
Identity = 58/164 (35.37%), Postives = 85/164 (51.83%), Query Frame = 0


Query: 5   PGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTLAEYI 64
           PG W         L ATA+  +S+        + SS  C +LGF+   LC  C  L ++ 
Sbjct: 5   PGGWLGPALGLRLLLATALQMVSAF-----GAEFSSESCRELGFSSNLLCGSCDLLGQFD 64

Query: 65  KDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQ-FPSVK 124
             Q L  DC  CC E++   T K+ Y+GA+LEVC  KL  +P++  F+  DK + F  ++
Sbjct: 65  LLQ-LDPDCRGCCQEEAQFETKKL-YAGAILEVCGXKLGRFPQVQAFVRSDKPKLFRGLQ 124

Query: 125 VQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKR 168
           ++Y   S P L LLDD G   E + I  W  +   +FL EK++R
Sbjct: 125 IKYVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSEKLQR 161

[Close]

BLAST of CsGy6G006710 vs. ExPASy Swiss-Prot
Match: A8YXY3 (Selenoprotein F OS=Bos taurus OX=9913 GN=SELENOF PE=2 SV=2)

HSP 1 Score: 96.3 bits (238), Expect = 3.6e-19
Identity = 50/132 (37.88%), Postives = 75/132 (56.82%), Query Frame = 0


Query: 37  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLE 96
           + SS  C +LGF+   LCS C  L ++    +L  DC  CC E++   T K+ Y+GA+LE
Sbjct: 32  EFSSESCRELGFSSNLLCSSCDLLGQF-NLLQLDPDCRGCCQEEAQFETKKL-YAGAILE 91

Query: 97  VCMRKLVFYPEIVGFIEDDKDQ-FPSVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKRE 156
           VC  KL  +P++  F+  DK + F  ++++Y   S P L LLDD G   E + I  W  +
Sbjct: 92  VCGXKLGRFPQVQAFVRSDKPKLFKGLQIKYVRGSDPVLKLLDDSGNIAEELSILKWNTD 151

Query: 157 HFLQFLQEKVKR 168
              +FL EK++R
Sbjct: 152 SVEEFLSEKLER 161

[Close]

BLAST of CsGy6G006710 vs. ExPASy Swiss-Prot
Match: O60613 (Selenoprotein F OS=Homo sapiens OX=9606 GN=SELENOF PE=1 SV=4)

HSP 1 Score: 95.5 bits (236), Expect = 6.2e-19
Identity = 50/132 (37.88%), Postives = 75/132 (56.82%), Query Frame = 0


Query: 37  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLE 96
           + SS  C +LGF+   LCS C  L ++    +L  DC  CC E++   T K+ Y+GA+LE
Sbjct: 35  EFSSEACRELGFSSNLLCSSCDLLGQF-NLLQLDPDCRGCCQEEAQFETKKL-YAGAILE 94

Query: 97  VCMRKLVFYPEIVGFIEDDKDQ-FPSVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKRE 156
           VC  KL  +P++  F+  DK + F  ++++Y   S P L LLDD G   E + I  W  +
Sbjct: 95  VCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTD 154

Query: 157 HFLQFLQEKVKR 168
              +FL EK++R
Sbjct: 155 SVEEFLSEKLER 164

[Close]

BLAST of CsGy6G006710 vs. ExPASy Swiss-Prot
Match: Q802F3 (Selenoprotein F OS=Danio rerio OX=7955 GN=selenof PE=2 SV=2)

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-18
Identity = 50/132 (37.88%), Postives = 75/132 (56.82%), Query Frame = 0


Query: 37  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLE 96
           +LSS  C +LGF+   LCS C  L ++  +Q L   C +CC E++     K+ Y GA+LE
Sbjct: 23  ELSSEACRELGFSSNLLCSSCELLGQFSLNQ-LDLPCRQCCQEEAQLENRKL-YPGAILE 82

Query: 97  VCMRKLVFYPEIVGFIEDDKDQ-FPSVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKRE 156
           VC  KL  +P++  F+  DK + F  ++++Y   S P L LLDD G   E + I  W  +
Sbjct: 83  VCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTD 142

Query: 157 HFLQFLQEKVKR 168
              +FL EK++R
Sbjct: 143 SVEEFLSEKLER 152

[Close]

BLAST of CsGy6G006710 vs. ExPASy Swiss-Prot
Match: Q923V8 (Selenoprotein F OS=Rattus norvegicus OX=10116 GN=Selenof PE=1 SV=3)

HSP 1 Score: 90.9 bits (224), Expect = 1.5e-17
Identity = 54/151 (35.76%), Postives = 81/151 (53.64%), Query Frame = 0


Query: 18  LTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCC 77
           L ATA   +S++       + SS  C +LGF+   LCS C  L ++     L   C  CC
Sbjct: 18  LLATAFQAVSAL-----GAEFSSEACRELGFSSNLLCSSCDLLGQF-NLLPLDPVCRGCC 77

Query: 78  AEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQ-FPSVKVQYTFNSPPKLIL 137
            E++   T K+ Y+GA+LEVC  KL  +P++  F+  DK + F  ++++Y   S P L L
Sbjct: 78  QEEAQFETKKL-YAGAILEVCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKL 137

Query: 138 LDDKGQHKESIRIDNWKREHFLQFLQEKVKR 168
           LDD G   E + I  W  +   +FL EK++R
Sbjct: 138 LDDNGNIAEELSILKWNTDSVEEFLSEKLER 161

[Close]

BLAST of CsGy6G006710 vs. NCBI nr
Match: XP_004140597.1 (selenoprotein F [Cucumis sativus] >KGN46338.1 hypothetical protein Csa_004937 [Cucumis sativus])

HSP 1 Score: 348 bits (892), Expect = 8.08e-121
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MQLLPGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLLPGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFP 120
           AEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFP
Sbjct: 61  AEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFP 120

Query: 121 SVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 171
           SVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI
Sbjct: 121 SVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 171

[Close]

BLAST of CsGy6G006710 vs. NCBI nr
Match: XP_008460012.1 (PREDICTED: 15 kDa selenoprotein [Cucumis melo])

HSP 1 Score: 333 bits (853), Expect = 7.17e-115
Identity = 162/171 (94.74%), Postives = 165/171 (96.49%), Query Frame = 0


Query: 1   MQLLPGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLLPGVWN A AVTV L A AIIFISSMPL WSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNPATAVTVTLAAAAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFP 120
           AEYIKDQELV+DCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIE+DKDQFP
Sbjct: 61  AEYIKDQELVADCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEDKDQFP 120

Query: 121 SVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 171
           SVKVQYTFNSPPKLILLDD+GQHKESIRIDNWKREHFLQFLQEKVKRSSAI
Sbjct: 121 SVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 171

[Close]

BLAST of CsGy6G006710 vs. NCBI nr
Match: KAA0039920.1 (15 kDa selenoprotein [Cucumis melo var. makuwa] >TYK24580.1 15 kDa selenoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 328 bits (840), Expect = 1.01e-112
Identity = 164/182 (90.11%), Postives = 167/182 (91.76%), Query Frame = 0


Query: 1   MQLLPGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLLPGVWN A AVTVAL ATAIIFISSMPL WSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNPATAVTVALAATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQ-----------ELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIV 120
           AEYIKDQ           ELV+DCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIV
Sbjct: 61  AEYIKDQGDAFNSVIRSAELVADCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIV 120

Query: 121 GFIEDDKDQFPSVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSS 171
           GFIE+DKDQFPSVKVQYTFNSPPKLILLDD+GQHKESIRIDNWKREHFLQFLQEKVKRSS
Sbjct: 121 GFIEEDKDQFPSVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHFLQFLQEKVKRSS 180

[Close]

BLAST of CsGy6G006710 vs. NCBI nr
Match: XP_038875398.1 (selenoprotein F [Benincasa hispida])

HSP 1 Score: 318 bits (814), Expect = 6.34e-109
Identity = 154/171 (90.06%), Postives = 162/171 (94.74%), Query Frame = 0


Query: 1   MQLLPGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLLPGV N A AVT+A+ AT +IFI+SMPL WSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVRNPATAVTMAVAATVVIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFP 120
           AEYIKDQELV+DCLKCC EDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIE++KDQFP
Sbjct: 61  AEYIKDQELVTDCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDQFP 120

Query: 121 SVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 171
           SVKVQY FNSPPKLILLDD+GQHKESIRIDNWKREH LQFLQEKVKRSSAI
Sbjct: 121 SVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI 171

[Close]

BLAST of CsGy6G006710 vs. NCBI nr
Match: XP_022954272.1 (selenoprotein F-like [Cucurbita moschata] >XP_023549321.1 selenoprotein F-like [Cucurbita pepo subsp. pepo] >KAG7013922.1 Selenoprotein F [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 301 bits (770), Expect = 3.02e-102
Identity = 151/172 (87.79%), Postives = 159/172 (92.44%), Query Frame = 0


Query: 1   MQLLPGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLL GV N A  VT+A   TAIIFI+SMPL WSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLTGVKNPATMVTMA---TAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFP 120
           AEYIKDQELV+DCLKCC EDSDDATSKITYSGA+LEVCMRKLVFYPEIVGFIE++KDQFP
Sbjct: 61  AEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFP 120

Query: 121 SVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVK-RSSAI 171
           SV VQYTFNSPPKLILLDD+GQHKESIRIDNWKREH LQFL+EKVK RSSAI
Sbjct: 121 SVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI 169

[Close]

BLAST of CsGy6G006710 vs. ExPASy TrEMBL
Match: A0A0A0KA30 (Sep15_SelM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G087180 PE=3 SV=1)

HSP 1 Score: 348 bits (892), Expect = 3.91e-121
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MQLLPGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLLPGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFP 120
           AEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFP
Sbjct: 61  AEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFP 120

Query: 121 SVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 171
           SVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI
Sbjct: 121 SVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 171

[Close]

BLAST of CsGy6G006710 vs. ExPASy TrEMBL
Match: A0A1S3CC00 (15 kDa selenoprotein OS=Cucumis melo OX=3656 GN=LOC103498956 PE=3 SV=1)

HSP 1 Score: 333 bits (853), Expect = 3.47e-115
Identity = 162/171 (94.74%), Postives = 165/171 (96.49%), Query Frame = 0


Query: 1   MQLLPGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLLPGVWN A AVTV L A AIIFISSMPL WSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNPATAVTVTLAAAAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFP 120
           AEYIKDQELV+DCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIE+DKDQFP
Sbjct: 61  AEYIKDQELVADCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEDKDQFP 120

Query: 121 SVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 171
           SVKVQYTFNSPPKLILLDD+GQHKESIRIDNWKREHFLQFLQEKVKRSSAI
Sbjct: 121 SVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 171

[Close]

BLAST of CsGy6G006710 vs. ExPASy TrEMBL
Match: A0A5A7T9G4 (15 kDa selenoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001250 PE=3 SV=1)

HSP 1 Score: 328 bits (840), Expect = 4.89e-113
Identity = 164/182 (90.11%), Postives = 167/182 (91.76%), Query Frame = 0


Query: 1   MQLLPGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLLPGVWN A AVTVAL ATAIIFISSMPL WSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNPATAVTVALAATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQ-----------ELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIV 120
           AEYIKDQ           ELV+DCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIV
Sbjct: 61  AEYIKDQGDAFNSVIRSAELVADCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIV 120

Query: 121 GFIEDDKDQFPSVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSS 171
           GFIE+DKDQFPSVKVQYTFNSPPKLILLDD+GQHKESIRIDNWKREHFLQFLQEKVKRSS
Sbjct: 121 GFIEEDKDQFPSVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHFLQFLQEKVKRSS 180

[Close]

BLAST of CsGy6G006710 vs. ExPASy TrEMBL
Match: A0A6J1GQK6 (selenoprotein F-like OS=Cucurbita moschata OX=3662 GN=LOC111456577 PE=3 SV=1)

HSP 1 Score: 301 bits (770), Expect = 1.46e-102
Identity = 151/172 (87.79%), Postives = 159/172 (92.44%), Query Frame = 0


Query: 1   MQLLPGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLL GV N A  VT+A   TAIIFI+SMPL WSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLTGVKNPATMVTMA---TAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFP 120
           AEYIKDQELV+DCLKCC EDSDDATSKITYSGA+LEVCMRKLVFYPEIVGFIE++KDQFP
Sbjct: 61  AEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFP 120

Query: 121 SVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVK-RSSAI 171
           SV VQYTFNSPPKLILLDD+GQHKESIRIDNWKREH LQFL+EKVK RSSAI
Sbjct: 121 SVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI 169

[Close]

BLAST of CsGy6G006710 vs. ExPASy TrEMBL
Match: A0A6J1JXH9 (selenoprotein F-like OS=Cucurbita maxima OX=3661 GN=LOC111488731 PE=3 SV=1)

HSP 1 Score: 297 bits (761), Expect = 3.44e-101
Identity = 150/172 (87.21%), Postives = 158/172 (91.86%), Query Frame = 0


Query: 1   MQLLPGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLL GV N A  VT+A   TAIIFI+SMPL WSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLTGVKNPATMVTMA---TAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFP 120
           AEYIKDQELV+DCLKCC EDSDDATSKITYSGA+LEVCMRKLVFYPEIVGFIE++K QFP
Sbjct: 61  AEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKYQFP 120

Query: 121 SVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVK-RSSAI 171
           SV VQYTFNSPPKLILLDD+GQHKESIRIDNWKREH LQFL+EKVK RSSAI
Sbjct: 121 SVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI 169

[Close]

BLAST of CsGy6G006710 vs. TAIR 10
Match: AT1G05720.1 (selenoprotein family protein )

HSP 1 Score: 247.7 bits (631), Expect = 6.9e-66
Identity = 114/159 (71.70%), Postives = 144/159 (90.57%), Query Frame = 0


Query: 12  IAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVS 71
           +A  V L+A  I+ ++S   + +KEQLS++ECEDLGF+GLALCSDCH+L+EY+KDQELVS
Sbjct: 6   MAKMVVLSAMMILILAS--TISAKEQLSTKECEDLGFSGLALCSDCHSLSEYVKDQELVS 65

Query: 72  DCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFPSVKVQYTFNSP 131
           DCLKCCA+DS+D+ SK+TYSGA+LEVCMRKLVFYPEIVGFIE++K++FPSVKVQY FNSP
Sbjct: 66  DCLKCCADDSEDSMSKVTYSGAILEVCMRKLVFYPEIVGFIEEEKEKFPSVKVQYIFNSP 125

Query: 132 PKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSA 171
           PKLI+LD+ G+HKESIRIDNWKREH LQ+++EKVK ++A
Sbjct: 126 PKLIMLDEDGEHKESIRIDNWKREHLLQYMREKVKPTAA 162

The following BLAST results are available for this feature:

BLAST of CsGy6G006710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A1Z623	2.1e-19	35.37	Selenoprotein F OS=Sus scrofa OX=9823 GN=SELENOF PE=2 SV=2	[more]
A8YXY3	3.6e-19	37.88	Selenoprotein F OS=Bos taurus OX=9913 GN=SELENOF PE=2 SV=2	[more]
O60613	6.2e-19	37.88	Selenoprotein F OS=Homo sapiens OX=9606 GN=SELENOF PE=1 SV=4	[more]
Q802F3	1.1e-18	37.88	Selenoprotein F OS=Danio rerio OX=7955 GN=selenof PE=2 SV=2	[more]
Q923V8	1.5e-17	35.76	Selenoprotein F OS=Rattus norvegicus OX=10116 GN=Selenof PE=1 SV=3	[more]

BLAST of CsGy6G006710 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140597.1	8.08e-121	100.00	selenoprotein F [Cucumis sativus] >KGN46338.1 hypothetical protein Csa_004937 [C...	[more]
XP_008460012.1	7.17e-115	94.74	PREDICTED: 15 kDa selenoprotein [Cucumis melo]	[more]
KAA0039920.1	1.01e-112	90.11	15 kDa selenoprotein [Cucumis melo var. makuwa] >TYK24580.1 15 kDa selenoprotein...	[more]
XP_038875398.1	6.34e-109	90.06	selenoprotein F [Benincasa hispida]	[more]
XP_022954272.1	3.02e-102	87.79	selenoprotein F-like [Cucurbita moschata] >XP_023549321.1 selenoprotein F-like [...	[more]

BLAST of CsGy6G006710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KA30	3.91e-121	100.00	Sep15_SelM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G087180 ...	[more]
A0A1S3CC00	3.47e-115	94.74	15 kDa selenoprotein OS=Cucumis melo OX=3656 GN=LOC103498956 PE=3 SV=1	[more]
A0A5A7T9G4	4.89e-113	90.11	15 kDa selenoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266...	[more]
A0A6J1GQK6	1.46e-102	87.79	selenoprotein F-like OS=Cucurbita moschata OX=3662 GN=LOC111456577 PE=3 SV=1	[more]
A0A6J1JXH9	3.44e-101	87.21	selenoprotein F-like OS=Cucurbita maxima OX=3661 GN=LOC111488731 PE=3 SV=1	[more]

BLAST of CsGy6G006710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05720.1	6.9e-66	71.70	selenoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038219	Selenoprotein F/M, thioredoxin-like domain superfamily	GENE3D	3.40.30.50		coord: 92..165 e-value: 1.2E-25 score: 91.5
IPR014912	Selenoprotein F/M domain	PFAM	PF08806	Sep15_SelM	coord: 93..165 e-value: 1.8E-27 score: 95.2
IPR039992	Selenoprotein F/M	PANTHER	PTHR13077	SELENOPROTEIN F	coord: 22..169
None	No IPR available	PANTHER	PTHR13077:SF8	BNAANNG25340D PROTEIN	coord: 22..169
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 76..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G006710.2	CsGy6G006710.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005788	endoplasmic reticulum lumen
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016491	oxidoreductase activity