CsGy6G006050 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G006050
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	SWIB domain-containing protein
Location	Gy14Chr6: 5339979 .. 5342174 (+)
RNA-Seq Expression	CsGy6G006050
Synteny	CsGy6G006050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTTTCAGCGTAAGTCGAGCGTAAGCGGGCAGAAACCCTAGCACTAACCGTCGTCTTCATCGGACCAAAATGGCCTCAGGTCTTAGCAATGGCACCAGGTTCTTCAAAGGCTGCAGAACTCTCTTAGATTCTCTCAAATCCACCACTCAAGCTTACTCTTCTACTCCTGGGGTCTCTTCCAAGAGTACCCTAAAACCCTCAACTGCTGCCGTTTCGGGCCAAAAGTCGAAACCCGCACCAAAGAAAGTGGCGAATCCTTCGGGCGGGCTTTTGAAAACCCAGAAAGTTTCTCCGACTCTCGCTGGCTTCCTCGGCCAGTCCGAGATTGCGCGCACTGAAGCCGTCAAGCAAATATGGGCGTACATCAAGCTGAATAACCTCCAGGTTACTTTTATTTCTCTTTTGTTCTAACCGATGTGGCTACTTTTTTACTGTTGTTTTTCTACATTCTTTGCTGCAATCTTTTCGTTTGCGTTGTTATTTTAACTTAACCTAGAACTTGAGGTTTTGGGTGTGGTGTTCATTCGTAGTTTATCAAATGTTAGTTCTCTGGGAAGCCGAATCTCTCTTTCAGTCCTCAGTTGCTCAATTGAAGGTTTCTGAATTTTAAAACTAGGTTAAAGTATAGGCAAACCCCAATATTCTTGAATCAAATAATATATATACCTGTTCGCAAGTTTCAATTGCCTTGAATAATGAGCAAGCTATTCTGGTGGTGAATGCATTTATTCAGCAGTGTCGTTTAAGGATTGAATGCTACTGTCTGAGCTTTTCTTTTCACATGAATTCGGGTTTGAGCTCCGCTTTGACAAAGTTGGCTGCTTCATAGGGAGAACCTTCTAAAAAAATTACTTTTGAGTATAAATACTTCATCGAAGTTCATGAAAGGCCAAACGAGGATTTTCTGTCTCTTAATCAAATGAAATAGATGTCTTGGCTACGAGTTTCTCAAGGGCGTGAGGGGAATATGCATTCAACAGAAAAAAGCTTGAGCTTCTCTCATATTGCCCTATAGTATGTTTTTTTTCTTGGAAACAGCATGGAAGTGAGCCACTTTTAGCTTGTCTTTGCTCATCATTTGACATTGTGGTAAATGTATCAATATATTGAGGGTGTTGAGTGGTTGGAACAGGAGTTGTCTCGTGTCTGCCACACCCAGAACAATCAGTCAAATTTTATCTAATGGGTGTGTCAGATTAAGTATTCTATTAATGGGGTTAACTGTAGAGATTAAGGGGACACTTCGGCTCCAACCTCAAGTGGGTTTTATAGGTCATCCCATGTTTAGGACTCCAATAATAATATTTATTGTTTTTGGCATGGTATATAAGATTAATCTAGACTACACACCAAATACATACTATTATAACTAGTATATTAACTAATTCAGTGTCTCACACCCTTCTTAAAGGGTATTTGGACCAAAAATGTTTGGGAGCAAAAGCTAGGCAACATGGAGTTGTGAATTCCACTACTTGTTTGGCAAAGGAGTTAGCAGGGGCCTCACAACTAAAAAAAACATTGGTGTTATGGCTTGTTGACTTCTCTTACTGTGGGTTCTAGGAGTTCACAAATTTCTTAATTTCATATCTACTCGGACCACTGGGTGAAATTAGAATTTGACATAGTATTAATCTTTTTTCTGTTTTTTAGAGTTTGGAGGACTTTGCTGATTGATACACATGTATATAACCTTTTGGTATGCAGAACCCAACTGATAAGAGGCAGATCATTTGTGATGCAAAGCTGAAGGCTATATTTGGTGGAAGAGAAAAAGTGGGAATGCTTGAGATTCCAAAATTTCTATCCATTCATTTTGTGAAATCTGGTTAACCTAAGCTTTCTGTGCATGCTATTCTTAGCTGTTCTAATACCTCTCTTCCAAATCCTTGACGGTGTCTTGTGATGTCTTGTTAGGTTTCGTGATGTCTTGTTAGGTTTTGTTTGGCTGTCCTATGACACCACCTTCACTTTTTGGTTTTACTCTGATTTAGGGAGAGGGTGTTTCTTGTTTAGAAATTGTTGACCATTAGTGTTTTATAATTAATTAATGTATCTTTTCTGTCTAAATTTTACCTTTTTCAGGATTCGTAGTTTTTCTAATCTAAATTTGTAGACTTAGGAAAGTATTATATTCGCTTTGAGAATTTGATTTGGATTCTCTTGAAGCTCAATCAGGTAGACAGAAGTTCGCAC

mRNA sequence

AGTTTCAGCGTAAGTCGAGCGTAAGCGGGCAGAAACCCTAGCACTAACCGTCGTCTTCATCGGACCAAAATGGCCTCAGGTCTTAGCAATGGCACCAGGTTCTTCAAAGGCTGCAGAACTCTCTTAGATTCTCTCAAATCCACCACTCAAGCTTACTCTTCTACTCCTGGGGTCTCTTCCAAGAGTACCCTAAAACCCTCAACTGCTGCCGTTTCGGGCCAAAAGTCGAAACCCGCACCAAAGAAAGTGGCGAATCCTTCGGGCGGGCTTTTGAAAACCCAGAAAGTTTCTCCGACTCTCGCTGGCTTCCTCGGCCAGTCCGAGATTGCGCGCACTGAAGCCGTCAAGCAAATATGGGCGTACATCAAGCTGAATAACCTCCAGAACCCAACTGATAAGAGGCAGATCATTTGTGATGCAAAGCTGAAGGCTATATTTGGTGGAAGAGAAAAAGTGGGAATGCTTGAGATTCCAAAATTTCTATCCATTCATTTTGTGAAATCTGGTTAACCTAAGCTTTCTGTGCATGCTATTCTTAGCTGTTCTAATACCTCTCTTCCAAATCCTTGACGGTGTCTTGTGATGTCTTGTTAGGTTTCGTGATGTCTTGTTAGGTTTTGTTTGGCTGTCCTATGACACCACCTTCACTTTTTGGTTTTACTCTGATTTAGGGAGAGGGTGTTTCTTGTTTAGAAATTGTTGACCATTAGTGTTTTATAATTAATTAATGTATCTTTTCTGTCTAAATTTTACCTTTTTCAGGATTCGTAGTTTTTCTAATCTAAATTTGTAGACTTAGGAAAGTATTATATTCGCTTTGAGAATTTGATTTGGATTCTCTTGAAGCTCAATCAGGTAGACAGAAGTTCGCAC

Coding sequence (CDS)

ATGGCCTCAGGTCTTAGCAATGGCACCAGGTTCTTCAAAGGCTGCAGAACTCTCTTAGATTCTCTCAAATCCACCACTCAAGCTTACTCTTCTACTCCTGGGGTCTCTTCCAAGAGTACCCTAAAACCCTCAACTGCTGCCGTTTCGGGCCAAAAGTCGAAACCCGCACCAAAGAAAGTGGCGAATCCTTCGGGCGGGCTTTTGAAAACCCAGAAAGTTTCTCCGACTCTCGCTGGCTTCCTCGGCCAGTCCGAGATTGCGCGCACTGAAGCCGTCAAGCAAATATGGGCGTACATCAAGCTGAATAACCTCCAGAACCCAACTGATAAGAGGCAGATCATTTGTGATGCAAAGCTGAAGGCTATATTTGGTGGAAGAGAAAAAGTGGGAATGCTTGAGATTCCAAAATTTCTATCCATTCATTTTGTGAAATCTGGTTAA

Protein sequence

MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKVANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIKLNNLQNPTDKRQIICDAKLKAIFGGREKVGMLEIPKFLSIHFVKSG*

Homology

[Close]

BLAST of CsGy6G006050 vs. ExPASy Swiss-Prot
Match: Q05024 (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TRI1 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.7e-13
Identity = 42/95 (44.21%), Postives = 58/95 (61.05%), Query Frame = 0


Query: 49  SGQKSKPAPKKVANPSGGLLKTQKV--SPTLAGFLGQSEIARTEAVKQIWAYIKLNNLQN 108
           S  KSK   KK  +P    +  +KV  S  L  FLG  E+ RT+ VK IW YIK ++LQN
Sbjct: 100 SESKSKRKKKKNDSPDSNSISVRKVLLSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQN 159

Query: 109 PTDKRQIICDAKLKAIFGGREKVGMLEIPKFLSIH 142
           P D+R+I+CD K++ IFG  +K+ M  + K L+ H
Sbjct: 160 PKDRREILCDEKMEPIFG--KKMTMFSMNKLLTKH 192

[Close]

BLAST of CsGy6G006050 vs. ExPASy Swiss-Prot
Match: Q08747 (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UAF30 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.8e-12
Identity = 49/132 (37.12%), Postives = 71/132 (53.79%), Query Frame = 0


Query: 16  RTLLDSLK-STTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKVANPSGGLLKTQKV- 75
           R+L D LK + T A   T  ++            S  K     KK    S   + T+KV 
Sbjct: 66  RSLEDLLKENATLAIELTKEITVSKRSSGEEKNDSETKGTHVEKKKGTVSKSPISTRKVT 125

Query: 76  -SPTLAGFLGQSEIARTEAVKQIWAYIKLNNLQNPTDKRQIICDAKLKAIFGGREKVGML 135
            S +LA  LG+ E+ RTE V+++WAYIK +NLQNP +K++I+CD KL+ I G  +   M 
Sbjct: 126 LSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELILG--KSTNMF 185

Query: 136 EIPKFLSIHFVK 145
           E+ K L+ H  +
Sbjct: 186 EMHKILASHMTE 195

[Close]

BLAST of CsGy6G006050 vs. ExPASy Swiss-Prot
Match: O74503 (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=spp27 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.5e-10
Identity = 38/87 (43.68%), Postives = 52/87 (59.77%), Query Frame = 0


Query: 37  SKSTLKPSTAAVSGQKSKPAPKKVANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIW 96
           +K T K       G K K       NP   L K  K+SP LA FLG  +++R + VK++W
Sbjct: 90  AKRTRKRKEDGEEGGKRKRNQDPANNP---LNKPMKLSPKLAEFLGLEQLSRPQTVKKLW 149

Query: 97  AYIKLNNLQNPTDKRQIICDAKLKAIF 124
            YIK ++LQ+P DKR I+CD KLK++F
Sbjct: 150 EYIKAHDLQDPNDKRTILCDDKLKSVF 173

[Close]

BLAST of CsGy6G006050 vs. ExPASy Swiss-Prot
Match: Q9SIV5 (Zinc finger CCCH domain-containing protein 19 OS=Arabidopsis thaliana OX=3702 GN=NERD PE=1 SV=3)

HSP 1 Score: 47.8 bits (112), Expect = 1.3e-04
Identity = 24/62 (38.71%), Postives = 37/62 (59.68%), Query Frame = 0


Query: 83  QSEIARTEAVKQIWAYIKLNNLQNPTDKRQIICDAKLKAIFGGREKVGMLEIPKFLSIHF 142
           +S +   E    + AYIK  NL++P  K Q+ICD++L+ +F G+  VG  E+   L  HF
Sbjct: 824 RSFLPMLEVQTLLLAYIKRYNLRDPRRKSQVICDSRLQNLF-GKSHVGHFEMLNLLDSHF 883

Query: 143 VK 145
           +K
Sbjct: 884 LK 884

[Close]

BLAST of CsGy6G006050 vs. ExPASy Swiss-Prot
Match: Q2TBN1 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Bos taurus OX=9913 GN=SMARCD1 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.2e-04
Identity = 24/67 (35.82%), Postives = 38/67 (56.72%), Query Frame = 0


Query: 72  KVSPTLAGFLGQSEIARTEAVKQIWAYIKLNNLQNPTDKRQIICDAKLKAIFGGREKVGM 131
           K+ P LA  LG     R   ++ +W YIK + LQ+P ++  +ICD  L+ IF   +++  
Sbjct: 296 KLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFES-QRMKF 355

Query: 132 LEIPKFL 139
            EIP+ L
Sbjct: 356 SEIPQRL 361

[Close]

BLAST of CsGy6G006050 vs. NCBI nr
Match: XP_004154030.1 (upstream activation factor subunit UAF30 isoform X1 [Cucumis sativus] >KGN46262.1 hypothetical protein Csa_005564 [Cucumis sativus])

HSP 1 Score: 277 bits (708), Expect = 1.41e-93
Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV 60
           MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV
Sbjct: 1   MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV 60

Query: 61  ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIKLNNLQNPTDKRQIICDAKLK 120
           ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIW YIKLNNLQNPTDKRQIICDAKLK
Sbjct: 61  ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWVYIKLNNLQNPTDKRQIICDAKLK 120

Query: 121 AIFGGREKVGMLEIPKFLSIHFVKSG 146
           AIFGGREKVGMLEIPKFLSIHFVKSG
Sbjct: 121 AIFGGREKVGMLEIPKFLSIHFVKSG 146

[Close]

BLAST of CsGy6G006050 vs. NCBI nr
Match: XP_008460088.1 (PREDICTED: protein TRI1-like [Cucumis melo] >KAA0039983.1 protein TRI1-like [Cucumis melo var. makuwa] >TYK24519.1 protein TRI1-like [Cucumis melo var. makuwa])

HSP 1 Score: 232 bits (591), Expect = 9.68e-76
Identity = 121/146 (82.88%), Postives = 132/146 (90.41%), Query Frame = 0


Query: 1   MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV 60
           MASGLSNGTRFF+GC+TLLDSLK TTQAYSSTP VSSKS LKP +AAVSGQKSK APK+ 
Sbjct: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60

Query: 61  ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIKLNNLQNPTDKRQIICDAKLK 120
            N SGG++K+ KVSPTLAGFLGQSEI+R +A+KQIW+YIKLNNLQN TDKRQI CDAKLK
Sbjct: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120

Query: 121 AIFGGREKVGMLEIPKFLSIHFVKSG 146
           AIFGGREKVGMLEI KFLS HFVKSG
Sbjct: 121 AIFGGREKVGMLEISKFLSPHFVKSG 146

[Close]

BLAST of CsGy6G006050 vs. NCBI nr
Match: XP_038906873.1 (upstream activation factor subunit spp27-like [Benincasa hispida])

HSP 1 Score: 196 bits (497), Expect = 1.95e-61
Identity = 108/146 (73.97%), Postives = 116/146 (79.45%), Query Frame = 0


Query: 1   MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV 60
           MASG  NGTRFF+GCRTL DSLKSTTQAYSSTP VS+K  LK S  AVSGQKS   PKKV
Sbjct: 1   MASG-RNGTRFFRGCRTLFDSLKSTTQAYSSTPAVSAKGKLKASNTAVSGQKSVAGPKKV 60

Query: 61  ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIKLNNLQNPTDKRQIICDAKLK 120
            N S G+ K+  VSP LAGFLG SE +R+EAVKQIWAYIKLNNLQ+P DKRQI CD KLK
Sbjct: 61  VNRSTGIFKSFPVSPALAGFLGMSETSRSEAVKQIWAYIKLNNLQSPADKRQINCDEKLK 120

Query: 121 AIFGGREKVGMLEIPKFLSIHFVKSG 146
           AIF GREKVG LEI K L+ HFVKS 
Sbjct: 121 AIFDGREKVGFLEIGKLLTPHFVKSS 145

[Close]

BLAST of CsGy6G006050 vs. NCBI nr
Match: XP_031743273.1 (upstream activation factor subunit spp27 isoform X2 [Cucumis sativus])

HSP 1 Score: 194 bits (492), Expect = 3.87e-61
Identity = 105/109 (96.33%), Postives = 106/109 (97.25%), Query Frame = 0


Query: 1   MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV 60
           MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV
Sbjct: 1   MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV 60

Query: 61  ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIKLNNLQNPTD 109
           ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIW YIKLNNLQ+  D
Sbjct: 61  ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWVYIKLNNLQSLED 109

[Close]

BLAST of CsGy6G006050 vs. NCBI nr
Match: KAG6593745.1 (hypothetical protein SDJN03_13221, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 189 bits (481), Expect = 5.67e-59
Identity = 104/146 (71.23%), Postives = 115/146 (78.77%), Query Frame = 0


Query: 1   MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV 60
           MASGL+NGTR F+GCRTLLDSLKSTTQAYSS   VS K  LK S AA S +KS+   KK 
Sbjct: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGELKASGAAASRKKSEAGEKKE 60

Query: 61  ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIKLNNLQNPTDKRQIICDAKLK 120
            N SGG+LK+ +VSP LAGFLG SE +R EAVKQIW+YIKLNNLQNP +KRQI CD KLK
Sbjct: 61  GNRSGGILKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLK 120

Query: 121 AIFGGREKVGMLEIPKFLSIHFVKSG 146
           AIF GRE VG+LEI K LS HFVKS 
Sbjct: 121 AIFDGRENVGILEIGKLLSPHFVKSS 146

[Close]

BLAST of CsGy6G006050 vs. ExPASy TrEMBL
Match: A0A0A0KCY9 (SWIB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G078570 PE=4 SV=1)

HSP 1 Score: 277 bits (708), Expect = 6.82e-94
Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV 60
           MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV
Sbjct: 1   MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV 60

Query: 61  ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIKLNNLQNPTDKRQIICDAKLK 120
           ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIW YIKLNNLQNPTDKRQIICDAKLK
Sbjct: 61  ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWVYIKLNNLQNPTDKRQIICDAKLK 120

Query: 121 AIFGGREKVGMLEIPKFLSIHFVKSG 146
           AIFGGREKVGMLEIPKFLSIHFVKSG
Sbjct: 121 AIFGGREKVGMLEIPKFLSIHFVKSG 146

[Close]

BLAST of CsGy6G006050 vs. ExPASy TrEMBL
Match: A0A5D3DMJ2 (Protein TRI1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00610 PE=4 SV=1)

HSP 1 Score: 232 bits (591), Expect = 4.68e-76
Identity = 121/146 (82.88%), Postives = 132/146 (90.41%), Query Frame = 0


Query: 1   MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV 60
           MASGLSNGTRFF+GC+TLLDSLK TTQAYSSTP VSSKS LKP +AAVSGQKSK APK+ 
Sbjct: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60

Query: 61  ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIKLNNLQNPTDKRQIICDAKLK 120
            N SGG++K+ KVSPTLAGFLGQSEI+R +A+KQIW+YIKLNNLQN TDKRQI CDAKLK
Sbjct: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120

Query: 121 AIFGGREKVGMLEIPKFLSIHFVKSG 146
           AIFGGREKVGMLEI KFLS HFVKSG
Sbjct: 121 AIFGGREKVGMLEISKFLSPHFVKSG 146

[Close]

BLAST of CsGy6G006050 vs. ExPASy TrEMBL
Match: A0A1S3CBA0 (protein TRI1-like OS=Cucumis melo OX=3656 GN=LOC103499003 PE=4 SV=1)

HSP 1 Score: 232 bits (591), Expect = 4.68e-76
Identity = 121/146 (82.88%), Postives = 132/146 (90.41%), Query Frame = 0


Query: 1   MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV 60
           MASGLSNGTRFF+GC+TLLDSLK TTQAYSSTP VSSKS LKP +AAVSGQKSK APK+ 
Sbjct: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60

Query: 61  ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIKLNNLQNPTDKRQIICDAKLK 120
            N SGG++K+ KVSPTLAGFLGQSEI+R +A+KQIW+YIKLNNLQN TDKRQI CDAKLK
Sbjct: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120

Query: 121 AIFGGREKVGMLEIPKFLSIHFVKSG 146
           AIFGGREKVGMLEI KFLS HFVKSG
Sbjct: 121 AIFGGREKVGMLEISKFLSPHFVKSG 146

[Close]

BLAST of CsGy6G006050 vs. ExPASy TrEMBL
Match: A0A6J1KHF5 (upstream activation factor subunit spp27-like OS=Cucurbita maxima OX=3661 GN=LOC111494404 PE=4 SV=1)

HSP 1 Score: 187 bits (474), Expect = 3.19e-58
Identity = 102/146 (69.86%), Postives = 115/146 (78.77%), Query Frame = 0


Query: 1   MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV 60
           MASGL+NGTR F+GCRTLLDSLKSTTQAYSS   VS K  LK S AA S +KS+   KK 
Sbjct: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGELKASGAAASRKKSEAGEKKE 60

Query: 61  ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIKLNNLQNPTDKRQIICDAKLK 120
            N SGG+ K+ +VSP LAGFLG SE +R+EAVKQIW+YIKLN+LQNP +KRQI CD KLK
Sbjct: 61  GNRSGGIFKSVQVSPALAGFLGMSESSRSEAVKQIWSYIKLNDLQNPANKRQINCDEKLK 120

Query: 121 AIFGGREKVGMLEIPKFLSIHFVKSG 146
           AIF GRE VG+LEI K LS HFVKS 
Sbjct: 121 AIFDGRENVGILEIGKLLSPHFVKSS 146

[Close]

BLAST of CsGy6G006050 vs. ExPASy TrEMBL
Match: A0A6J1KEZ2 (upstream activation factor subunit spp27-like OS=Cucurbita maxima OX=3661 GN=LOC111494406 PE=4 SV=1)

HSP 1 Score: 186 bits (471), Expect = 9.12e-58
Identity = 101/146 (69.18%), Postives = 115/146 (78.77%), Query Frame = 0


Query: 1   MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV 60
           MASGL+NGTR F+GCRTLLDSLKSTTQAYSS   VS K  LK S AA + +KS+   KK 
Sbjct: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGELKASGAAATRKKSEAGEKKE 60

Query: 61  ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIKLNNLQNPTDKRQIICDAKLK 120
            N SGG+ K+ +VSP LAGFLG SE +R+EAVKQIW+YIKLN+LQNP +KRQI CD KLK
Sbjct: 61  GNRSGGIFKSVQVSPALAGFLGMSESSRSEAVKQIWSYIKLNDLQNPANKRQINCDEKLK 120

Query: 121 AIFGGREKVGMLEIPKFLSIHFVKSG 146
           AIF GRE VG+LEI K LS HFVKS 
Sbjct: 121 AIFDGRENVGILEIGKLLSPHFVKSS 146

[Close]

BLAST of CsGy6G006050 vs. TAIR 10
Match: AT3G03590.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 110.5 bits (275), Expect = 1.1e-24
Identity = 65/135 (48.15%), Postives = 81/135 (60.00%), Query Frame = 0


Query: 12  FKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSK-PAPKKVANPSGGLLKT 71
           F+G R+LL      T +  S  G + K   KP   A    K+K  +P K    S G+ K 
Sbjct: 9   FRGARSLLAPASRATSSLVSA-GSTKKPAAKPKAKAKPKPKAKSDSPAKKTPRSTGIFKV 68

Query: 72  QKVSPTLAGFLGQSEIARTEAVKQIWAYIKLNNLQNPTDKRQIICDAKLKAIFGGREKVG 131
             VSP LA FLG  E +RT+A+K IW YIK ++LQNP DKR+I CD  LK IF G++KVG
Sbjct: 69  TPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKLIFEGKDKVG 128

Query: 132 MLEIPKFLSIHFVKS 146
            LEI K LS HFVK+
Sbjct: 129 FLEISKLLSPHFVKT 142

[Close]

BLAST of CsGy6G006050 vs. TAIR 10
Match: AT2G35605.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 107.1 bits (266), Expect = 1.2e-23
Identity = 50/87 (57.47%), Postives = 63/87 (72.41%), Query Frame = 0


Query: 59  KVANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIKLNNLQNPTDKRQIICDAK 118
           K      G+LK   VS  LA F+G++E++RT AVK+IW YIKLNNLQNP +KR+I+CD +
Sbjct: 22  KTGRQGTGILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQNPVNKREILCDEQ 81

Query: 119 LKAIFGGREKVGMLEIPKFLSIHFVKS 146
           LK IF G++ VG LEI K LS HF KS
Sbjct: 82  LKTIFSGKDTVGFLEISKLLSQHFPKS 108

[Close]

BLAST of CsGy6G006050 vs. TAIR 10
Match: AT1G31760.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 99.0 bits (245), Expect = 3.4e-21
Identity = 46/86 (53.49%), Postives = 61/86 (70.93%), Query Frame = 0


Query: 60  VANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIKLNNLQNPTDKRQIICDAKL 119
           VA    G+ KT+ VS  LA F G+ E+ R  A+K++W Y+KL+NLQNP +K++I CD KL
Sbjct: 26  VAGEGKGIFKTRPVSQQLASFAGERELTRGSALKKVWEYVKLHNLQNPANKKEIHCDDKL 85

Query: 120 KAIFGGREKVGMLEIPKFLSIHFVKS 146
           K IF G++KVG+ EI K LS HF KS
Sbjct: 86  KTIFDGKDKVGITEIMKLLSPHFPKS 111

[Close]

BLAST of CsGy6G006050 vs. TAIR 10
Match: AT2G14880.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 88.2 bits (217), Expect = 6.0e-18
Identity = 53/135 (39.26%), Postives = 81/135 (60.00%), Query Frame = 0


Query: 9   TRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKVANPSGGLL 68
           T  F+   T L SL+     ++S P    +  ++  T+A    +     K+V     G++
Sbjct: 16  TTSFRNPSTPLSSLR-----FASHPAAKLR-LVRAVTSATESSEPTATNKRVPR---GIM 75

Query: 69  KTQKVSPTLAGFLGQSEIARTEAVKQIWAYIKLNNLQNPTDKRQIICDAKLKAIFGGREK 128
           K + VSP +   +   EIART+A+K+IWAYIK ++LQ+P +KR+I+CD KLK IF GR++
Sbjct: 76  KPRPVSPEMQDIVELPEIARTQALKRIWAYIKEHDLQDPQNKREILCDEKLKKIFEGRDR 135

Query: 129 VGMLEIPKFLSIHFV 144
           VG LEI K +  HF+
Sbjct: 136 VGFLEIAKLIGPHFL 141

[Close]

BLAST of CsGy6G006050 vs. TAIR 10
Match: AT4G34290.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 84.7 bits (208), Expect = 6.6e-17
Identity = 51/143 (35.66%), Postives = 80/143 (55.94%), Query Frame = 0


Query: 1   MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV 60
           ++SG+ + T        L  S+ S +    S    ++   ++  T+A +         K 
Sbjct: 3   LSSGIFSTTFLCVDTAPLRSSMLSPSSLRLSPNHPTNLRMVRAVTSAAAASSDPTTTTKT 62

Query: 61  ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWAYIKLNNLQNPTDKRQIICDAKLK 120
             P  G++K + VS  +   +G  EI RT+A+K+IWAYIK ++LQ+P +KR I+CD KLK
Sbjct: 63  REPR-GIMKPRPVSQAMQDVVGVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLK 122

Query: 121 AIFGGREKVGMLEIPKFLSIHFV 144
            IF G+E+VG LEI K +  HF+
Sbjct: 123 KIFEGKERVGFLEIAKLIGPHFL 144

The following BLAST results are available for this feature:

BLAST of CsGy6G006050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q05024	5.7e-13	44.21	Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 ...	[more]
Q08747	4.8e-12	37.12	Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC...	[more]
O74503	1.5e-10	43.68	Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97...	[more]
Q9SIV5	1.3e-04	38.71	Zinc finger CCCH domain-containing protein 19 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q2TBN1	2.2e-04	35.82	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfami...	[more]

BLAST of CsGy6G006050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004154030.1	1.41e-93	99.32	upstream activation factor subunit UAF30 isoform X1 [Cucumis sativus] >KGN46262....	[more]
XP_008460088.1	9.68e-76	82.88	PREDICTED: protein TRI1-like [Cucumis melo] >KAA0039983.1 protein TRI1-like [Cuc...	[more]
XP_038906873.1	1.95e-61	73.97	upstream activation factor subunit spp27-like [Benincasa hispida]	[more]
XP_031743273.1	3.87e-61	96.33	upstream activation factor subunit spp27 isoform X2 [Cucumis sativus]	[more]
KAG6593745.1	5.67e-59	71.23	hypothetical protein SDJN03_13221, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CsGy6G006050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCY9	6.82e-94	99.32	SWIB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G078570 PE=4 S...	[more]
A0A5D3DMJ2	4.68e-76	82.88	Protein TRI1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00...	[more]
A0A1S3CBA0	4.68e-76	82.88	protein TRI1-like OS=Cucumis melo OX=3656 GN=LOC103499003 PE=4 SV=1	[more]
A0A6J1KHF5	3.19e-58	69.86	upstream activation factor subunit spp27-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1KEZ2	9.12e-58	69.18	upstream activation factor subunit spp27-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of CsGy6G006050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03590.1	1.1e-24	48.15	SWIB/MDM2 domain superfamily protein	[more]
AT2G35605.1	1.2e-23	57.47	SWIB/MDM2 domain superfamily protein	[more]
AT1G31760.1	3.4e-21	53.49	SWIB/MDM2 domain superfamily protein	[more]
AT2G14880.1	6.0e-18	39.26	SWIB/MDM2 domain superfamily protein	[more]
AT4G34290.1	6.6e-17	35.66	SWIB/MDM2 domain superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019835	SWIB domain	SMART	SM00151	swib_2	coord: 67..146 e-value: 9.9E-32 score: 121.4
IPR003121	SWIB/MDM2 domain	PFAM	PF02201	SWIB	coord: 70..142 e-value: 4.7E-30 score: 103.3
IPR003121	SWIB/MDM2 domain	PROSITE	PS51925	SWIB_MDM2	coord: 66..144 score: 22.101461
IPR036885	SWIB/MDM2 domain superfamily	GENE3D	1.10.245.10	SWIB/MDM2 domain	coord: 61..146 e-value: 1.7E-27 score: 97.1
IPR036885	SWIB/MDM2 domain superfamily	SUPERFAMILY	47592	SWIB/MDM2 domain	coord: 64..144
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..51
None	No IPR available	PANTHER	PTHR13844	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D	coord: 7..145
None	No IPR available	PANTHER	PTHR13844:SF67	PROTEIN TRI1	coord: 7..145
None	No IPR available	CDD	cd10567	SWIB-MDM2_like	coord: 72..142 e-value: 9.91548E-37 score: 118.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G006050.1	CsGy6G006050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus