CsGy6G005140 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G005140
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Cytochrome c oxidase assembly factor 4-like protein
Location	Gy14Chr6: 4759979 .. 4761459 (-)
RNA-Seq Expression	CsGy6G005140
Synteny	CsGy6G005140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACACTAAATTAAGCACAAATATACAAACCCTAATCTATATGAAAAAGAAGAGAAGAAATTCTATAATAAATCGCGAACTTTGAGCAGTTCAAACTTATTACGCTAAGAAGTTTGAATTTCGTATAAAATTTGTGTCGAACCTGAAGGAAAAAAAATGGGGAAACCGCCGATTTCGCCGGAGAATCAGCCGCCTCTTCACCGGAGTGATGCTGACGATGAAGACGAGAACGTCAAGCAGCTCAATGAATGCTCATCCTTCTACTTATCCTTACAGGTTCTTCTTTTTGGCGGTTCTGTTCGTCGTCTTCTACCTTTTTACGTTCTGCTAAAACCCTAAGCCCTAAAATGTAAATTGATGTTTATTAACTTCATCCCTATAATTTTCAGGATTGTCTTATCAAAACTAACAGGAACTGGAAATCTTGCCAGGCTGGTATACTGTTCATCTCTCACTGACCATCGTTTTCACCAATTCGATCATTTCTTCTTGTTCTGAATTCTAATTTTGTTCATAGGTTCATCTTTGAATTATTTGTGGTTGCCAAGATCTCTTTCTGTTTCTTACCAATTTGAAATGTTAATGTCTATATTGTGCAATTTTTTAATTTTTCATATAAAATGACTGTCCTAATCCATTTCCTCGCTGCTAATGGTTTGTCTAGTAGAGGTTCAAGCTTTGAAGTCTTGCAGTGAGAGAAGGAAATCTGGCCAACGCAAGTGAAGATTATTCTGCAAAGGTGCATAATGTAACAAATAATATCTAAGATTTTGTTTTATCTTGTTTAGATGTATTTTGTAACATCTATAAGGTTGACTGTTCTTCCAAGTCTTTGCCATTATGTAGAGATTATTTCAGATTGAACCTTCCATCAACTAAAAGTTTTGTCAATTACCGTTTAACTAAGCCTGTTTTCAATAAATTCTTATTCTACACTAAAAAATGCTCGAGCGTGTGCAACTAACCTATTCTCAAAGACTCAAACGAGATATGATCCAAGATTTTTTGTGTTTTGACCTTTTGTTAAAGTTAGGATGGGTGGAATTACTATAAAAAAAAATCAAACAGGTCGCACGAAAATCTCAATAGTTTGTCAAACCTTACTATCTTAAAATTTTAACAAAAATATATTTGTGTTAATTTCTACTAAACTATGATCACGTGAGAGTAACCGTTGGTGATTTGGATGAGAGAATTTGAATCACAAAACATTGAAATTTGAAATTATAGAAAAAATTGAGGGTCCATCTGAGCAACAATTTGTGACAGTCATCCACAAGTTAACTTCACAACAAGCTAAACCATTGACATGACACTTTTCAAGAAGTGGGATCTATCTTAAGCAAACAGAAGAAGAAAAAGGATATATAATTTTTTTTCTTTTTTTTTTTGCTATTTACAACATATTCTACCTTAGCATGCCAGCCAGAAATGAAGAGACAAGGTAACAAAGTGGGGTCTGAAACTTGTTTATCATTGAG

mRNA sequence

CAACACTAAATTAAGCACAAATATACAAACCCTAATCTATATGAAAAAGAAGAGAAGAAATTCTATAATAAATCGCGAACTTTGAGCAGTTCAAACTTATTACGCTAAGAAGTTTGAATTTCGTATAAAATTTGTGTCGAACCTGAAGGAAAAAAAATGGGGAAACCGCCGATTTCGCCGGAGAATCAGCCGCCTCTTCACCGGAGTGATGCTGACGATGAAGACGAGAACGTCAAGCAGCTCAATGAATGCTCATCCTTCTACTTATCCTTACAGGATTGTCTTATCAAAACTAACAGGAACTGGAAATCTTGCCAGGCTGAGGTTCAAGCTTTGAAGTCTTGCAGTGAGAGAAGGAAATCTGGCCAACGCAAGTGAAGATTATTCTGCAAAGGTGCATAATGTAACAAATAATATCTAAGATTTTGTTTTATCTTGTTTAGATGTATTTTGTAACATCTATAAGGTTGACTGTTCTTCCAAGTCTTTGCCATTATGTAGAGATTATTTCAGATTGAACCTTCCATCAACTAAAAGTTTTGTCAATTACCGTTTAACTAAGCCTGTTTTCAATAAATTCTTATTCTACACTAAAAAATGCTCGAGCGTGTGCAACTAACCTATTCTCAAAGACTCAAACGAGATATGATCCAAGATTTTTTGTGTTTTGACCTTTTGTTAAAGTTAGGATGGGTGGAATTACTATAAAAAAAAATCAAACAGGTCGCACGAAAATCTCAATAGTTTGTCAAACCTTACTATCTTAAAATTTTAACAAAAATATATTTGTGTTAATTTCTACTAAACTATGATCACGTGAGAGTAACCGTTGGTGATTTGGATGAGAGAATTTGAATCACAAAACATTGAAATTTGAAATTATAGAAAAAATTGAGGGTCCATCTGAGCAACAATTTGTGACAGTCATCCACAAGTTAACTTCACAACAAGCTAAACCATTGACATGACACTTTTCAAGAAGTGGGATCTATCTTAAGCAAACAGAAGAAGAAAAAGGATATATAATTTTTTTTCTTTTTTTTTTTGCTATTTACAACATATTCTACCTTAGCATGCCAGCCAGAAATGAAGAGACAAGGTAACAAAGTGGGGTCTGAAACTTGTTTATCATTGAG

Coding sequence (CDS)

ATGGGGAAACCGCCGATTTCGCCGGAGAATCAGCCGCCTCTTCACCGGAGTGATGCTGACGATGAAGACGAGAACGTCAAGCAGCTCAATGAATGCTCATCCTTCTACTTATCCTTACAGGATTGTCTTATCAAAACTAACAGGAACTGGAAATCTTGCCAGGCTGAGGTTCAAGCTTTGAAGTCTTGCAGTGAGAGAAGGAAATCTGGCCAACGCAAGTGA

Protein sequence

MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQALKSCSERRKSGQRK*

Homology

[Close]

BLAST of CsGy6G005140 vs. NCBI nr
Match: XP_004153368.1 (cytochrome c oxidase assembly factor 4 homolog, mitochondrial isoform X2 [Cucumis sativus])

HSP 1 Score: 150 bits (378), Expect = 1.48e-45
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL 60
          MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL
Sbjct: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL 60

Query: 61 KSCSERRKSGQRK 73
          KSCSERRKSGQRK
Sbjct: 61 KSCSERRKSGQRK 73

[Close]

BLAST of CsGy6G005140 vs. NCBI nr
Match: XP_008458528.1 (PREDICTED: cytochrome c oxidase assembly factor 4 homolog, mitochondrial [Cucumis melo] >XP_008458529.1 PREDICTED: cytochrome c oxidase assembly factor 4 homolog, mitochondrial [Cucumis melo] >XP_008458530.1 PREDICTED: cytochrome c oxidase assembly factor 4 homolog, mitochondrial [Cucumis melo] >XP_016902266.1 PREDICTED: cytochrome c oxidase assembly factor 4 homolog, mitochondrial [Cucumis melo] >KAA0033444.1 cytochrome c oxidase assembly factor 4-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 148 bits (374), Expect = 6.04e-45
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL 60
          MGKPPISPEN+PPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL
Sbjct: 1  MGKPPISPENRPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL 60

Query: 61 KSCSERRKSGQRK 73
          KSCSERRKSGQRK
Sbjct: 61 KSCSERRKSGQRK 73

[Close]

BLAST of CsGy6G005140 vs. NCBI nr
Match: XP_011656645.1 (uncharacterized protein LOC101215408 isoform X1 [Cucumis sativus] >KAE8646682.1 hypothetical protein Csa_004822 [Cucumis sativus])

HSP 1 Score: 145 bits (366), Expect = 1.03e-43
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQA-EVQA 60
          MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQA EVQA
Sbjct: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAVEVQA 60

Query: 61 LKSCSERRKSGQRK 73
          LKSCSERRKSGQRK
Sbjct: 61 LKSCSERRKSGQRK 74

[Close]

BLAST of CsGy6G005140 vs. NCBI nr
Match: XP_038874602.1 (uncharacterized protein LOC120067191 [Benincasa hispida] >XP_038874603.1 uncharacterized protein LOC120067191 [Benincasa hispida])

HSP 1 Score: 141 bits (356), Expect = 3.38e-42
Identity = 68/73 (93.15%), Postives = 71/73 (97.26%), Query Frame = 0


Query: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL 60
          MGKPP SPENQPPLHRSDA+D+DENVKQLNECSSFYLSLQDCLIKTNRNWK+CQAEVQAL
Sbjct: 1  MGKPPNSPENQPPLHRSDAEDDDENVKQLNECSSFYLSLQDCLIKTNRNWKACQAEVQAL 60

Query: 61 KSCSERRKSGQRK 73
          KSCSERRK GQRK
Sbjct: 61 KSCSERRKPGQRK 73

[Close]

BLAST of CsGy6G005140 vs. NCBI nr
Match: XP_022958916.1 (uncharacterized protein LOC111460064 [Cucurbita moschata] >XP_023006279.1 uncharacterized protein LOC111499062 [Cucurbita maxima] >XP_023548597.1 uncharacterized protein LOC111807214 [Cucurbita pepo subsp. pepo] >KAG7013604.1 hypothetical protein SDJN02_23771 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 130 bits (326), Expect = 1.28e-37
Identity = 61/70 (87.14%), Postives = 66/70 (94.29%), Query Frame = 0


Query: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL 60
          MG PPISPENQPPLH SDAD +DENVKQLNECSSFYLSLQ+CLIKTNRNWK CQAEVQAL
Sbjct: 1  MGNPPISPENQPPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQAL 60

Query: 61 KSCSERRKSG 70
          K+C+ERRK+G
Sbjct: 61 KACNERRKTG 70

[Close]

BLAST of CsGy6G005140 vs. ExPASy TrEMBL
Match: A0A0A0KEH3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G062310 PE=4 SV=1)

HSP 1 Score: 150 bits (378), Expect = 7.17e-46
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL 60
          MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL
Sbjct: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL 60

Query: 61 KSCSERRKSGQRK 73
          KSCSERRKSGQRK
Sbjct: 61 KSCSERRKSGQRK 73

[Close]

BLAST of CsGy6G005140 vs. ExPASy TrEMBL
Match: A0A1S3C8M5 (cytochrome c oxidase assembly factor 4 homolog, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103497907 PE=4 SV=1)

HSP 1 Score: 148 bits (374), Expect = 2.93e-45
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL 60
          MGKPPISPEN+PPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL
Sbjct: 1  MGKPPISPENRPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL 60

Query: 61 KSCSERRKSGQRK 73
          KSCSERRKSGQRK
Sbjct: 61 KSCSERRKSGQRK 73

[Close]

BLAST of CsGy6G005140 vs. ExPASy TrEMBL
Match: A0A5A7SQI1 (Cytochrome c oxidase assembly factor 4-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G001040 PE=4 SV=1)

HSP 1 Score: 148 bits (374), Expect = 2.93e-45
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL 60
          MGKPPISPEN+PPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL
Sbjct: 1  MGKPPISPENRPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL 60

Query: 61 KSCSERRKSGQRK 73
          KSCSERRKSGQRK
Sbjct: 61 KSCSERRKSGQRK 73

[Close]

BLAST of CsGy6G005140 vs. ExPASy TrEMBL
Match: A0A6J1L1R2 (uncharacterized protein LOC111499062 OS=Cucurbita maxima OX=3661 GN=LOC111499062 PE=4 SV=1)

HSP 1 Score: 130 bits (326), Expect = 6.20e-38
Identity = 61/70 (87.14%), Postives = 66/70 (94.29%), Query Frame = 0


Query: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL 60
          MG PPISPENQPPLH SDAD +DENVKQLNECSSFYLSLQ+CLIKTNRNWK CQAEVQAL
Sbjct: 1  MGNPPISPENQPPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQAL 60

Query: 61 KSCSERRKSG 70
          K+C+ERRK+G
Sbjct: 61 KACNERRKTG 70

[Close]

BLAST of CsGy6G005140 vs. ExPASy TrEMBL
Match: A0A6J1H3G8 (uncharacterized protein LOC111460064 OS=Cucurbita moschata OX=3662 GN=LOC111460064 PE=4 SV=1)

HSP 1 Score: 130 bits (326), Expect = 6.20e-38
Identity = 61/70 (87.14%), Postives = 66/70 (94.29%), Query Frame = 0


Query: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL 60
          MG PPISPENQPPLH SDAD +DENVKQLNECSSFYLSLQ+CLIKTNRNWK CQAEVQAL
Sbjct: 1  MGNPPISPENQPPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQAL 60

Query: 61 KSCSERRKSG 70
          K+C+ERRK+G
Sbjct: 61 KACNERRKTG 70

[Close]

BLAST of CsGy6G005140 vs. TAIR 10
Match: AT5G18920.1 (Cox19-like CHCH family protein )

HSP 1 Score: 92.4 bits (228), Expect = 1.6e-19
Identity = 42/56 (75.00%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 12 PPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQALKSCSERR 68
          PP H+ DADD+DENVKQL ECSS YLSLQDCL+ +NR+WKSCQ  VQALK C ERR
Sbjct: 19 PPNHQMDADDDDENVKQLKECSSLYLSLQDCLVDSNRDWKSCQKHVQALKECHERR 74

The following BLAST results are available for this feature:

BLAST of CsGy6G005140 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy6G005140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004153368.1	1.48e-45	100.00	cytochrome c oxidase assembly factor 4 homolog, mitochondrial isoform X2 [Cucumi...	[more]
XP_008458528.1	6.04e-45	98.63	PREDICTED: cytochrome c oxidase assembly factor 4 homolog, mitochondrial [Cucumi...	[more]
XP_011656645.1	1.03e-43	98.65	uncharacterized protein LOC101215408 isoform X1 [Cucumis sativus] >KAE8646682.1 ...	[more]
XP_038874602.1	3.38e-42	93.15	uncharacterized protein LOC120067191 [Benincasa hispida] >XP_038874603.1 unchara...	[more]
XP_022958916.1	1.28e-37	87.14	uncharacterized protein LOC111460064 [Cucurbita moschata] >XP_023006279.1 unchar...	[more]

BLAST of CsGy6G005140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEH3	7.17e-46	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G062310 PE=4 SV=1	[more]
A0A1S3C8M5	2.93e-45	98.63	cytochrome c oxidase assembly factor 4 homolog, mitochondrial OS=Cucumis melo OX...	[more]
A0A5A7SQI1	2.93e-45	98.63	Cytochrome c oxidase assembly factor 4-like protein OS=Cucumis melo var. makuwa ...	[more]
A0A6J1L1R2	6.20e-38	87.14	uncharacterized protein LOC111499062 OS=Cucurbita maxima OX=3661 GN=LOC111499062...	[more]
A0A6J1H3G8	6.20e-38	87.14	uncharacterized protein LOC111460064 OS=Cucurbita moschata OX=3662 GN=LOC1114600...	[more]

BLAST of CsGy6G005140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G18920.1	1.6e-19	75.00	Cox19-like CHCH family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR48236	COX19-LIKE CHCH FAMILY PROTEIN	coord: 3..72
IPR009069	Cysteine alpha-hairpin motif superfamily	SUPERFAMILY	47072	Cysteine alpha-hairpin motif	coord: 27..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G005140.2	CsGy6G005140.2	mRNA