CsGy6G005003 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G005003
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr6: 4635043 .. 4635330 (-)
RNA-Seq Expression	CsGy6G005003
Synteny	CsGy6G005003

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCTGTTCAACTGCCAATATTGTTATTTTAACTATTTTTGTAGCATCCATAGCTCTTAGGCTACCAACGGAAACCACCGCAAGAGCCATTGCCGACCCTTATCCTCTCTCATGGCCGCGGTTGCTGATATACAATACGGTGATGAAAGTCAGGCTTAATGATGAAGCAGGGTCAGGAGAGGGAAGTGGAGATGATGAATCTGATCCACCATTGAAGGAAGAAAAGGGGAGCAGAAAACCTTGGCCGAAGAACCCTGTCTCTAAATCTCCACCACCACCATTTTAG

mRNA sequence

ATGGGCTGTTCAACTGCCAATATTGTTATTTTAACTATTTTTGTAGCATCCATAGCTCTTAGGCTACCAACGGAAACCACCGCAAGAGCCATTGCCGACCCTTATCCTCTCTCATGGCCGCGGTTGCTGATATACAATACGGTGATGAAAGTCAGGCTTAATGATGAAGCAGGGTCAGGAGAGGGAAGTGGAGATGATGAATCTGATCCACCATTGAAGGAAGAAAAGGGGAGCAGAAAACCTTGGCCGAAGAACCCTGTCTCTAAATCTCCACCACCACCATTTTAG

Coding sequence (CDS)

ATGGGCTGTTCAACTGCCAATATTGTTATTTTAACTATTTTTGTAGCATCCATAGCTCTTAGGCTACCAACGGAAACCACCGCAAGAGCCATTGCCGACCCTTATCCTCTCTCATGGCCGCGGTTGCTGATATACAATACGGTGATGAAAGTCAGGCTTAATGATGAAGCAGGGTCAGGAGAGGGAAGTGGAGATGATGAATCTGATCCACCATTGAAGGAAGAAAAGGGGAGCAGAAAACCTTGGCCGAAGAACCCTGTCTCTAAATCTCCACCACCACCATTTTAG

Protein sequence

MGCSTANIVILTIFVASIALRLPTETTARAIADPYPLSWPRLLIYNTVMKVRLNDEAGSGEGSGDDESDPPLKEEKGSRKPWPKNPVSKSPPPPF*

Homology

[Close]

BLAST of CsGy6G005003 vs. NCBI nr
Match: KAE8637368.1 (hypothetical protein CSA_004461, partial [Cucumis sativus])

HSP 1 Score: 171 bits (432), Expect = 3.12e-53
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MGCSTANIVILTIFVASIALRLPTETTARAIADPYPLSWPRLLIYNTVMKVRLNDEAGSG 60
          MGCSTANIVILTIFVASIALRLPTETTARAIADPYPLSWPRLLIYNTVMKVRLNDEAGSG
Sbjct: 1  MGCSTANIVILTIFVASIALRLPTETTARAIADPYPLSWPRLLIYNTVMKVRLNDEAGSG 60

Query: 61 EGSGDDESDPPLKEEKGSRKPWPKNP 86
          EGSGDDESDPPLKEEKGSRKPWPKNP
Sbjct: 61 EGSGDDESDPPLKEEKGSRKPWPKNP 86

[Close]

BLAST of CsGy6G005003 vs. NCBI nr
Match: KAA0054914.1 (hypothetical protein E6C27_scaffold43052G00420 [Cucumis melo var. makuwa] >TYK22702.1 hypothetical protein E5676_scaffold1163G00190 [Cucumis melo var. makuwa])

HSP 1 Score: 167 bits (422), Expect = 1.38e-51
Identity = 85/95 (89.47%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 1  MGCSTANIVILTIFVASIALRLPTETTARAIADPYPLSWPRLLIYNTVMKVRLNDEAGSG 60
          MGCSTANI+ILTIFVASIALRLP+ETTARAIADPYPLSWP L IYNT+MKVRLNDEAGSG
Sbjct: 1  MGCSTANILILTIFVASIALRLPSETTARAIADPYPLSWPWLPIYNTLMKVRLNDEAGSG 60

Query: 61 EGSGDDESDPPLKEEKGSRKPWPKNPVSKSPPPPF 95
          E +GDDESDPP KE K SRKPWPKNPVSKSPPPPF
Sbjct: 61 EENGDDESDPPSKEAKSSRKPWPKNPVSKSPPPPF 95

[Close]

BLAST of CsGy6G005003 vs. NCBI nr
Match: KAE8646678.1 (hypothetical protein Csa_023589, partial [Cucumis sativus])

HSP 1 Score: 160 bits (404), Expect = 4.74e-49
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 17 SIALRLPTETTARAIADPYPLSWPRLLIYNTVMKVRLNDEAGSGEGSGDDESDPPLKEEK 76
          SIALRLPTETTARAIADPYPLSWPRLLIYNTVMKVRLNDEAGSGEGSGDDESDPPLKEEK
Sbjct: 1  SIALRLPTETTARAIADPYPLSWPRLLIYNTVMKVRLNDEAGSGEGSGDDESDPPLKEEK 60

Query: 77 GSRKPWPKNPVSKSPPPPF 95
          GSRKPWPKNPVSKSPPPPF
Sbjct: 61 GSRKPWPKNPVSKSPPPPF 79

[Close]

BLAST of CsGy6G005003 vs. NCBI nr
Match: KAG6578899.1 (hypothetical protein SDJN03_23347, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.0 bits (193), Expect = 1.27e-16
Identity = 51/104 (49.04%), Postives = 65/104 (62.50%), Query Frame = 0


Query: 1   MGCSTANIVILTIFVASIALRLPTETTARAIADPYPLSWP------RLLIYNTVMKVRLN 60
           MG STAN+ I+ I VASIALR P+ TTA A+  P PL  P        L +   +K+ L 
Sbjct: 1   MGYSTANLFIV-ILVASIALRPPSATTASAVVGPSPLPPPIYHSASGTLSFGRYIKISLE 60

Query: 61  DEAGSGEGSGDDESDPP---LKEEKGSRKPWPKNPVSKSPPPPF 95
            +AG    +G+DES+PP    K  +G R+PWPK PV+KSPPPPF
Sbjct: 61  GKAGPVVENGEDESEPPPPSSKVRRGPRRPWPKKPVAKSPPPPF 103

[Close]

BLAST of CsGy6G005003 vs. NCBI nr
Match: KAG6578898.1 (hypothetical protein SDJN03_23346, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.9 bits (180), Expect = 9.85e-15
Identity = 51/102 (50.00%), Postives = 63/102 (61.76%), Query Frame = 0


Query: 1  MGCSTANIVILTIFVASIALRLPTETTARAIADPYPLSWPRL------LIYNTVMKVRLN 60
          MG STAN++   I VASIALRLP E  A A+  P PL  P        L++   +KV L 
Sbjct: 1  MGYSTANLMF-GILVASIALRLPLEARASAMVGPSPLPPPTCHSPSGQLLFRRPIKVSLT 60

Query: 61 DEAGSGEGSGDDESDPPL-KEEKGSRKPWPKNPVSKSPPPPF 95
           +A     SG+DE++ P  K+EKG RKPWPK PV K+PPPPF
Sbjct: 61 VKA-----SGEDEAEAPSSKDEKGRRKPWPKQPVPKAPPPPF 96

[Close]

BLAST of CsGy6G005003 vs. ExPASy TrEMBL
Match: A0A0A0K9K2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G058720 PE=4 SV=1)

HSP 1 Score: 187 bits (476), Expect = 3.85e-60
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MGCSTANIVILTIFVASIALRLPTETTARAIADPYPLSWPRLLIYNTVMKVRLNDEAGSG 60
          MGCSTANIVILTIFVASIALRLPTETTARAIADPYPLSWPRLLIYNTVMKVRLNDEAGSG
Sbjct: 1  MGCSTANIVILTIFVASIALRLPTETTARAIADPYPLSWPRLLIYNTVMKVRLNDEAGSG 60

Query: 61 EGSGDDESDPPLKEEKGSRKPWPKNPVSKSPPPPF 95
          EGSGDDESDPPLKEEKGSRKPWPKNPVSKSPPPPF
Sbjct: 61 EGSGDDESDPPLKEEKGSRKPWPKNPVSKSPPPPF 95

[Close]

BLAST of CsGy6G005003 vs. ExPASy TrEMBL
Match: A0A5A7UIB8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00190 PE=4 SV=1)

HSP 1 Score: 167 bits (422), Expect = 6.66e-52
Identity = 85/95 (89.47%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 1  MGCSTANIVILTIFVASIALRLPTETTARAIADPYPLSWPRLLIYNTVMKVRLNDEAGSG 60
          MGCSTANI+ILTIFVASIALRLP+ETTARAIADPYPLSWP L IYNT+MKVRLNDEAGSG
Sbjct: 1  MGCSTANILILTIFVASIALRLPSETTARAIADPYPLSWPWLPIYNTLMKVRLNDEAGSG 60

Query: 61 EGSGDDESDPPLKEEKGSRKPWPKNPVSKSPPPPF 95
          E +GDDESDPP KE K SRKPWPKNPVSKSPPPPF
Sbjct: 61 EENGDDESDPPSKEAKSSRKPWPKNPVSKSPPPPF 95

The following BLAST results are available for this feature:

BLAST of CsGy6G005003 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy6G005003 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8637368.1	3.12e-53	100.00	hypothetical protein CSA_004461, partial [Cucumis sativus]	[more]
KAA0054914.1	1.38e-51	89.47	hypothetical protein E6C27_scaffold43052G00420 [Cucumis melo var. makuwa] >TYK22...	[more]
KAE8646678.1	4.74e-49	100.00	hypothetical protein Csa_023589, partial [Cucumis sativus]	[more]
KAG6578899.1	1.27e-16	49.04	hypothetical protein SDJN03_23347, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6578898.1	9.85e-15	50.00	hypothetical protein SDJN03_23346, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CsGy6G005003 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9K2	3.85e-60	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G058720 PE=4 SV=1	[more]
A0A5A7UIB8	6.66e-52	89.47	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CsGy6G005003 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G005003.1	CsGy6G005003.1	mRNA