CsGy6G004035 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy6G004035
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionUnknown protein
LocationGy14Chr6: 3770246 .. 3770578 (+)
RNA-Seq ExpressionCsGy6G004035
SyntenyCsGy6G004035
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGTGTTTGCAGCAATGGGTAATCTCTATCTCCTTCCATTTTACTCGTTAGAAGACCCAATCGCCATATCTTTACCTGAAGATATGTACGACAAAATGAGAATGGAAGTGGAGAAATGGAAGAAAAGGACGATTTGGGTTGTCTTTAATTCCAATTTCCGCAAAAGGGTTGTTGATTCTTTTACCAATAGAGTGGATATGGAGTTTTGGGTTATCGGCATTTATGGATTCTCGACTGCTTTCAAGTTAGCGAGGAGGAAAGTGGTTGTGGCGATATGGCTGGCTTTCTATTGGTTAGTCGGCGATCGATTGACTGCGTCTTGTAGCTGA

mRNA sequence

ATGGGTGTGTTTGCAGCAATGGGTAATCTCTATCTCCTTCCATTTTACTCGTTAGAAGACCCAATCGCCATATCTTTACCTGAAGATATGTACGACAAAATGAGAATGGAAGTGGAGAAATGGAAGAAAAGGACGATTTGGGTTGTCTTTAATTCCAATTTCCGCAAAAGGGTTGTTGATTCTTTTACCAATAGAGTGGATATGGAGTTTTGGGTTATCGGCATTTATGGATTCTCGACTGCTTTCAAGTTAGCGAGGAGGAAAGTGGTTGTGGCGATATGGCTGGCTTTCTATTGGTTAGTCGGCGATCGATTGACTGCGTCTTGTAGCTGA

Coding sequence (CDS)

ATGGGTGTGTTTGCAGCAATGGGTAATCTCTATCTCCTTCCATTTTACTCGTTAGAAGACCCAATCGCCATATCTTTACCTGAAGATATGTACGACAAAATGAGAATGGAAGTGGAGAAATGGAAGAAAAGGACGATTTGGGTTGTCTTTAATTCCAATTTCCGCAAAAGGGTTGTTGATTCTTTTACCAATAGAGTGGATATGGAGTTTTGGGTTATCGGCATTTATGGATTCTCGACTGCTTTCAAGTTAGCGAGGAGGAAAGTGGTTGTGGCGATATGGCTGGCTTTCTATTGGTTAGTCGGCGATCGATTGACTGCGTCTTGTAGCTGA

Protein sequence

MGVFAAMGNLYLLPFYSLEDPIAISLPEDMYDKMRMEVEKWKKRTIWVVFNSNFRKRVVDSFTNRVDMEFWVIGIYGFSTAFKLARRKVVVAIWLAFYWLVGDRLTASCS*
Homology
BLAST of CsGy6G004035 vs. NCBI nr
Match: KGN46050.1 (hypothetical protein Csa_004804 [Cucumis sativus])

HSP 1 Score: 233 bits (593), Expect = 3.35e-77
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0

Query: 1   MGVFAAMGNLYLLPFYSLEDPIAISLPEDMYDKMRMEVEKWKKRTIWVVFNSNFRKRVVD 60
           MGVFAAMGNLYLLPFYSLEDPIAISLPEDMYDKMRMEVEKWKKRTIWVVFNSNFRKRVVD
Sbjct: 1   MGVFAAMGNLYLLPFYSLEDPIAISLPEDMYDKMRMEVEKWKKRTIWVVFNSNFRKRVVD 60

Query: 61  SFTNRVDMEFWVIGIYGFSTAFKLARRKVVVAIWLAFYWLVGDRLTASCS 110
           SFTNRVDMEFWVIGIYGFSTAFKLARRKVVVAIWLAFYWLVGDRLTASCS
Sbjct: 61  SFTNRVDMEFWVIGIYGFSTAFKLARRKVVVAIWLAFYWLVGDRLTASCS 110

BLAST of CsGy6G004035 vs. NCBI nr
Match: KAG7016354.1 (hypothetical protein SDJN02_21462, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 97.8 bits (242), Expect = 1.30e-21
Identity = 56/111 (50.45%), Postives = 69/111 (62.16%), Query Frame = 0

Query: 2   GVFAAMGNL---YLLPFYSLEDPIAISLPEDMYDKMRMEVEKWKKRTIWVVFNSNFRKRV 61
           GVF   G L   +L PF S  D  ++ L EDM++K RMEVEK KKR + VVFNS+FRKR+
Sbjct: 7   GVFDETGALRQSHLHPFCSSNDLQSLHL-EDMFEKTRMEVEKGKKRKVRVVFNSSFRKRI 66

Query: 62  VDSFTNRVDMEFWVIGIYGFSTAFKLARRKVVVAIWLAFYWLVGDRLTASC 109
            D  TN + +E W+I + GFS A KLARR           WL+GDRL  SC
Sbjct: 67  GDFSTNNMTIEVWIIAVCGFSMAVKLARRGGC--------WLIGDRLIESC 108

BLAST of CsGy6G004035 vs. NCBI nr
Match: KAG6578826.1 (40S ribosomal protein S17-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 63.5 bits (153), Expect = 1.53e-09
Identity = 40/76 (52.63%), Postives = 50/76 (65.79%), Query Frame = 0

Query: 2   GVFAAMGNL---YLLPFYSLEDPIAISLPEDMYDKMRMEVEKWKKRTIWVVFNSNFRKRV 61
           GVF   G L   +L PF S  D  ++ L EDM++K RMEVEK KKR + VVFNS+FRKR+
Sbjct: 123 GVFDETGALRQSHLHPFCSSNDLQSLHL-EDMFEKTRMEVEKGKKRKVRVVFNSSFRKRI 182

Query: 62  VDSFTNRVDMEFWVIG 74
            D  TN + +E  VIG
Sbjct: 183 GDFSTNNMTIE--VIG 195

BLAST of CsGy6G004035 vs. NCBI nr
Match: XP_022993469.1 (uncharacterized protein LOC111489470 [Cucurbita maxima])

HSP 1 Score: 50.8 bits (120), Expect = 1.37e-04
Identity = 30/68 (44.12%), Postives = 39/68 (57.35%), Query Frame = 0

Query: 30 MYDKMRMEVEKWKKRTIWVVFNSNFRKRVVDSFTNRVDME------FWVI--GIYGFSTA 89
          M++K RMEVEK KKR I VVFNS+FRKR+ D  TN + +        W++  G  G    
Sbjct: 1  MFEKTRMEVEKGKKRKIRVVFNSDFRKRIGDFSTNNMTIRVLDHRHLWILDGGQVGKEGR 60

BLAST of CsGy6G004035 vs. ExPASy TrEMBL
Match: A0A0A0K8K0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G046280 PE=4 SV=1)

HSP 1 Score: 233 bits (593), Expect = 1.62e-77
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0

Query: 1   MGVFAAMGNLYLLPFYSLEDPIAISLPEDMYDKMRMEVEKWKKRTIWVVFNSNFRKRVVD 60
           MGVFAAMGNLYLLPFYSLEDPIAISLPEDMYDKMRMEVEKWKKRTIWVVFNSNFRKRVVD
Sbjct: 1   MGVFAAMGNLYLLPFYSLEDPIAISLPEDMYDKMRMEVEKWKKRTIWVVFNSNFRKRVVD 60

Query: 61  SFTNRVDMEFWVIGIYGFSTAFKLARRKVVVAIWLAFYWLVGDRLTASCS 110
           SFTNRVDMEFWVIGIYGFSTAFKLARRKVVVAIWLAFYWLVGDRLTASCS
Sbjct: 61  SFTNRVDMEFWVIGIYGFSTAFKLARRKVVVAIWLAFYWLVGDRLTASCS 110

BLAST of CsGy6G004035 vs. ExPASy TrEMBL
Match: A0A6J1K099 (uncharacterized protein LOC111489470 OS=Cucurbita maxima OX=3661 GN=LOC111489470 PE=4 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 6.65e-05
Identity = 30/68 (44.12%), Postives = 39/68 (57.35%), Query Frame = 0

Query: 30 MYDKMRMEVEKWKKRTIWVVFNSNFRKRVVDSFTNRVDME------FWVI--GIYGFSTA 89
          M++K RMEVEK KKR I VVFNS+FRKR+ D  TN + +        W++  G  G    
Sbjct: 1  MFEKTRMEVEKGKKRKIRVVFNSDFRKRIGDFSTNNMTIRVLDHRHLWILDGGQVGKEGR 60

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KGN46050.13.35e-77100.00hypothetical protein Csa_004804 [Cucumis sativus][more]
KAG7016354.11.30e-2150.45hypothetical protein SDJN02_21462, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6578826.11.53e-0952.6340S ribosomal protein S17-3, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022993469.11.37e-0444.12uncharacterized protein LOC111489470 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
A0A0A0K8K01.62e-77100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G046280 PE=4 SV=1[more]
A0A6J1K0996.65e-0544.12uncharacterized protein LOC111489470 OS=Cucurbita maxima OX=3661 GN=LOC111489470... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy6G004035.1CsGy6G004035.1mRNA