CsGy6G002780 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G002780
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	proline-rich protein 36-like
Location	Gy14Chr6: 2141474 .. 2141674 (-)
RNA-Seq Expression	CsGy6G002780
Synteny	CsGy6G002780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTCTTCAAGTTCAAGTCTTCGAAAGAACAACAATGATAACGCCAAAGCTCCTCGTCTACGGCTCAGTATGAATGCTGGTGATGGCACTCAGATTAACCGTCGTCATTCTCGACCACTTCAAAGAAACCGCAACAGTAAAACCAACCGTGCTCCTCCGCCAAAGAAGAGCACCGGCGGCGGTGGTCAGACAAACTAA

mRNA sequence

ATGGAGTCTTCAAGTTCAAGTCTTCGAAAGAACAACAATGATAACGCCAAAGCTCCTCGTCTACGGCTCAGTATGAATGCTGGTGATGGCACTCAGATTAACCGTCGTCATTCTCGACCACTTCAAAGAAACCGCAACAGTAAAACCAACCGTGCTCCTCCGCCAAAGAAGAGCACCGGCGGCGGTGGTCAGACAAACTAA

Coding sequence (CDS)

ATGGAGTCTTCAAGTTCAAGTCTTCGAAAGAACAACAATGATAACGCCAAAGCTCCTCGTCTACGGCTCAGTATGAATGCTGGTGATGGCACTCAGATTAACCGTCGTCATTCTCGACCACTTCAAAGAAACCGCAACAGTAAAACCAACCGTGCTCCTCCGCCAAAGAAGAGCACCGGCGGCGGTGGTCAGACAAACTAA

Protein sequence

MESSSSSLRKNNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKSTGGGGQTN*

Homology

[Close]

BLAST of CsGy6G002780 vs. NCBI nr
Match: KAE8646590.1 (hypothetical protein Csa_005634, partial [Cucumis sativus])

HSP 1 Score: 117 bits (292), Expect = 1.09e-32
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MESSSSSLRKNNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKSTG 60
          MESSSSSLRKNNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKSTG
Sbjct: 1  MESSSSSLRKNNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKSTG 60

Query: 61 GG 62
          GG
Sbjct: 61 GG 62

[Close]

BLAST of CsGy6G002780 vs. NCBI nr
Match: KAA0048493.1 (hypothetical protein E6C27_scaffold61G001060 [Cucumis melo var. makuwa] >TYK28285.1 hypothetical protein E5676_scaffold600G001020 [Cucumis melo var. makuwa])

HSP 1 Score: 95.1 bits (235), Expect = 6.41e-24
Identity = 56/68 (82.35%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 1  MESSSSSLRK-NNND-NAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKS 60
          MESSSSSL+K NNND NAKAPRLRL+MNAGDG  IN RHSRP +R R SK NRAPPPKKS
Sbjct: 1  MESSSSSLQKINNNDSNAKAPRLRLTMNAGDGAHINPRHSRPPRRTRGSKINRAPPPKKS 60

Query: 61 TGGGGQTN 66
          TGGGGQTN
Sbjct: 61 TGGGGQTN 68

[Close]

BLAST of CsGy6G002780 vs. NCBI nr
Match: KAE8650564.1 (hypothetical protein Csa_011065, partial [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 3.88e-14
Identity = 45/63 (71.43%), Postives = 49/63 (77.78%), Query Frame = 0


Query: 1  MESSSSSLRKNNNDNAKAPRLR-LSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKST 60
          MESSSS L+KNN DNAKAPRLR L++NA       RRHSRP +R RNSK N APPPKKST
Sbjct: 1  MESSSSCLQKNNKDNAKAPRLRRLTVNA-------RRHSRPPRRARNSKINPAPPPKKST 56

Query: 61 GGG 62
          GGG
Sbjct: 61 GGG 56

[Close]

BLAST of CsGy6G002780 vs. NCBI nr
Match: XP_022930152.1 (proline-rich protein 36-like [Cucurbita moschata])

HSP 1 Score: 58.9 bits (141), Expect = 4.08e-08
Identity = 38/62 (61.29%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 1  MESSSSSLRKNNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKSTG 60
          ME SSS+L+ +NNDNAKA  LR   N   GTQINR  S P +R   + TNR PPPKKSTG
Sbjct: 1  MEVSSSTLQNSNNDNAKASYLRRRRNTVGGTQINRL-SGPSRRANGTPTNRGPPPKKSTG 60

Query: 61 GG 62
          GG
Sbjct: 61 GG 61

[Close]

BLAST of CsGy6G002780 vs. ExPASy TrEMBL
Match: A0A0A0KAN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020130 PE=4 SV=1)

HSP 1 Score: 124 bits (312), Expect = 5.22e-36
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MESSSSSLRKNNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKSTG 60
          MESSSSSLRKNNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKSTG
Sbjct: 1  MESSSSSLRKNNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKSTG 60

Query: 61 GGGQTN 66
          GGGQTN
Sbjct: 61 GGGQTN 66

[Close]

BLAST of CsGy6G002780 vs. ExPASy TrEMBL
Match: A0A5D3DY74 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001020 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 3.10e-24
Identity = 56/68 (82.35%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 1  MESSSSSLRK-NNND-NAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKS 60
          MESSSSSL+K NNND NAKAPRLRL+MNAGDG  IN RHSRP +R R SK NRAPPPKKS
Sbjct: 1  MESSSSSLQKINNNDSNAKAPRLRLTMNAGDGAHINPRHSRPPRRTRGSKINRAPPPKKS 60

Query: 61 TGGGGQTN 66
          TGGGGQTN
Sbjct: 61 TGGGGQTN 68

[Close]

BLAST of CsGy6G002780 vs. ExPASy TrEMBL
Match: A0A0A0L7D2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G258100 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.85e-17
Identity = 49/67 (73.13%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 1  MESSSSSLRKNNNDNAKAPRLR-LSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKST 60
          MESSSS L+KNN DNAKAPRLR L++NA       RRHSRP +R RNSK N APPPKKST
Sbjct: 1  MESSSSCLQKNNKDNAKAPRLRRLTVNA-------RRHSRPPRRARNSKINPAPPPKKST 60

Query: 61 GGGGQTN 66
          GGGGQTN
Sbjct: 61 GGGGQTN 60

[Close]

BLAST of CsGy6G002780 vs. ExPASy TrEMBL
Match: A0A6J1EPK7 (proline-rich protein 36-like OS=Cucurbita moschata OX=3662 GN=LOC111436664 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.98e-08
Identity = 38/62 (61.29%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 1  MESSSSSLRKNNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKSTG 60
          ME SSS+L+ +NNDNAKA  LR   N   GTQINR  S P +R   + TNR PPPKKSTG
Sbjct: 1  MEVSSSTLQNSNNDNAKASYLRRRRNTVGGTQINRL-SGPSRRANGTPTNRGPPPKKSTG 60

Query: 61 GG 62
          GG
Sbjct: 61 GG 61

The following BLAST results are available for this feature:

BLAST of CsGy6G002780 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy6G002780 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646590.1	1.09e-32	100.00	hypothetical protein Csa_005634, partial [Cucumis sativus]	[more]
KAA0048493.1	6.41e-24	82.35	hypothetical protein E6C27_scaffold61G001060 [Cucumis melo var. makuwa] >TYK2828...	[more]
KAE8650564.1	3.88e-14	71.43	hypothetical protein Csa_011065, partial [Cucumis sativus]	[more]
XP_022930152.1	4.08e-08	61.29	proline-rich protein 36-like [Cucurbita moschata]	[more]

BLAST of CsGy6G002780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAN3	5.22e-36	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020130 PE=4 SV=1	[more]
A0A5D3DY74	3.10e-24	82.35	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0L7D2	1.85e-17	73.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G258100 PE=4 SV=1	[more]
A0A6J1EPK7	1.98e-08	61.29	proline-rich protein 36-like OS=Cucurbita moschata OX=3662 GN=LOC111436664 PE=4 ...	[more]

BLAST of CsGy6G002780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G002780.2	CsGy6G002780.2	mRNA