CsGy6G002500 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G002500
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr6: 1842290 .. 1842586 (-)
RNA-Seq Expression	CsGy6G002500
Synteny	CsGy6G002500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGGCAACAGGCAAAAGAAATCTCACTCATCTTTTTCAATCTTTAGCTTTTTCAAATCCAGAAGGGGTCGAAAAGGAGACCACTACGACCACGGTGGGGCTTGGCCGGACGAGATGCCGAGGTCGAACAAGGTGTGGCCAAGTGATGAGGACAAAGCTCATCATTGGGTTGCTGAACCTGGCATTGATCGGAAGGCCAAAGATTATATTGACAGGATCTATAGAAACCGTGTTTTTGAATCTGAACGACAAACTGTCACTATATCTCCCAATGGAACAAAATCCAATGTGTAA

mRNA sequence

ATGGGAGGCAACAGGCAAAAGAAATCTCACTCATCTTTTTCAATCTTTAGCTTTTTCAAATCCAGAAGGGGTCGAAAAGGAGACCACTACGACCACGGTGGGGCTTGGCCGGACGAGATGCCGAGGTCGAACAAGGTGTGGCCAAGTGATGAGGACAAAGCTCATCATTGGGTTGCTGAACCTGGCATTGATCGGAAGGCCAAAGATTATATTGACAGGATCTATAGAAACCGTGTTTTTGAATCTGAACGACAAACTGTCACTATATCTCCCAATGGAACAAAATCCAATGTGTAA

Coding sequence (CDS)

ATGGGAGGCAACAGGCAAAAGAAATCTCACTCATCTTTTTCAATCTTTAGCTTTTTCAAATCCAGAAGGGGTCGAAAAGGAGACCACTACGACCACGGTGGGGCTTGGCCGGACGAGATGCCGAGGTCGAACAAGGTGTGGCCAAGTGATGAGGACAAAGCTCATCATTGGGTTGCTGAACCTGGCATTGATCGGAAGGCCAAAGATTATATTGACAGGATCTATAGAAACCGTGTTTTTGAATCTGAACGACAAACTGTCACTATATCTCCCAATGGAACAAAATCCAATGTGTAA

Protein sequence

MGGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV*

Homology

[Close]

BLAST of CsGy6G002500 vs. NCBI nr
Match: KGN45870.1 (hypothetical protein Csa_004960 [Cucumis sativus])

HSP 1 Score: 210 bits (534), Expect = 1.39e-68
Identity = 96/98 (97.96%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MGGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWVAE 60
          MGGNRQKKSHSSFSIFSFFKS+RGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHW+AE
Sbjct: 1  MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98
          PGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of CsGy6G002500 vs. NCBI nr
Match: KAA0035003.1 (hypothetical protein E6C27_scaffold57G00440 [Cucumis melo var. makuwa] >TYK02343.1 hypothetical protein E5676_scaffold155G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 184 bits (467), Expect = 2.41e-58
Identity = 87/97 (89.69%), Postives = 91/97 (93.81%), Query Frame = 0


Query: 2  GGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWVAEP 61
          G NRQKKSHSSFSIFSFFKSRRGRKGD+ +H G+  DEMPRS KVWPSDEDKAHHWVAEP
Sbjct: 3  GNNRQKKSHSSFSIFSFFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWVAEP 62

Query: 62 GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98
          GIDRKAKDYIDRIYRNRVFESERQT+TISPNGTKSNV
Sbjct: 63 GIDRKAKDYIDRIYRNRVFESERQTITISPNGTKSNV 99

[Close]

BLAST of CsGy6G002500 vs. NCBI nr
Match: KGN45869.1 (hypothetical protein Csa_005516 [Cucumis sativus])

HSP 1 Score: 182 bits (463), Expect = 9.81e-58
Identity = 86/97 (88.66%), Postives = 90/97 (92.78%), Query Frame = 0


Query: 2  GGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWVAEP 61
          G NRQKK+H+SFSIFSFFKSRRGRKGDH +H G+  DEMPRS KVWPSDEDKAHHWVAEP
Sbjct: 3  GNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVAEP 62

Query: 62 GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98
          GIDRKAKDYIDRIYRNRVFESERQTVTISPNG KSNV
Sbjct: 63 GIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 99

[Close]

BLAST of CsGy6G002500 vs. NCBI nr
Match: KGN45868.1 (hypothetical protein Csa_004803 [Cucumis sativus])

HSP 1 Score: 167 bits (423), Expect = 1.03e-51
Identity = 77/92 (83.70%), Postives = 81/92 (88.04%), Query Frame = 0


Query: 1  MGGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWVAE 60
          MGG++ KKSHSSFS FSF KS+  RKGDHYDHGG+W DE  RS KVWPSDEDKAHHWVAE
Sbjct: 1  MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPN 92
          PGIDRKAKDYIDRIYRNRVFESERQTVTI  N
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTIPTN 92

[Close]

BLAST of CsGy6G002500 vs. NCBI nr
Match: KAG6592313.1 (hypothetical protein SDJN03_14659, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 167 bits (422), Expect = 1.71e-51
Identity = 77/94 (81.91%), Postives = 83/94 (88.30%), Query Frame = 0


Query: 2  GGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWVAEP 61
          G NR KKSHSSFSIF+FFK R+GRK DHYDHGG W +EMPRS KVWPSDEDK H WVAEP
Sbjct: 3  GNNRSKKSHSSFSIFNFFKFRKGRKEDHYDHGGYW-NEMPRSGKVWPSDEDKTHRWVAEP 62

Query: 62 GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTK 95
          GIDRKAKDYID+IYRNR+FESERQTVT+  NGTK
Sbjct: 63 GIDRKAKDYIDKIYRNRIFESERQTVTLPANGTK 95

[Close]

BLAST of CsGy6G002500 vs. ExPASy TrEMBL
Match: A0A0A0K7Y2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1)

HSP 1 Score: 210 bits (534), Expect = 6.75e-69
Identity = 96/98 (97.96%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MGGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWVAE 60
          MGGNRQKKSHSSFSIFSFFKS+RGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHW+AE
Sbjct: 1  MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98
          PGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of CsGy6G002500 vs. ExPASy TrEMBL
Match: A0A0A0KBW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1)

HSP 1 Score: 207 bits (528), Expect = 5.56e-68
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1  MGGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWVAE 60
          MGGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAW DEMPRSNKVWPSDEDKAHHWVAE
Sbjct: 1  MGGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98
          PGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of CsGy6G002500 vs. ExPASy TrEMBL
Match: A0A5A7SWT9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00350 PE=4 SV=1)

HSP 1 Score: 184 bits (467), Expect = 1.17e-58
Identity = 87/97 (89.69%), Postives = 91/97 (93.81%), Query Frame = 0


Query: 2  GGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWVAEP 61
          G NRQKKSHSSFSIFSFFKSRRGRKGD+ +H G+  DEMPRS KVWPSDEDKAHHWVAEP
Sbjct: 3  GNNRQKKSHSSFSIFSFFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWVAEP 62

Query: 62 GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98
          GIDRKAKDYIDRIYRNRVFESERQT+TISPNGTKSNV
Sbjct: 63 GIDRKAKDYIDRIYRNRVFESERQTITISPNGTKSNV 99

[Close]

BLAST of CsGy6G002500 vs. ExPASy TrEMBL
Match: A0A0A0KAK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1)

HSP 1 Score: 182 bits (463), Expect = 4.75e-58
Identity = 86/97 (88.66%), Postives = 90/97 (92.78%), Query Frame = 0


Query: 2  GGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWVAEP 61
          G NRQKK+H+SFSIFSFFKSRRGRKGDH +H G+  DEMPRS KVWPSDEDKAHHWVAEP
Sbjct: 3  GNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVAEP 62

Query: 62 GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98
          GIDRKAKDYIDRIYRNRVFESERQTVTISPNG KSNV
Sbjct: 63 GIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 99

[Close]

BLAST of CsGy6G002500 vs. ExPASy TrEMBL
Match: A0A0A0K8V3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014880 PE=4 SV=1)

HSP 1 Score: 167 bits (423), Expect = 4.99e-52
Identity = 77/92 (83.70%), Postives = 81/92 (88.04%), Query Frame = 0


Query: 1  MGGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWVAE 60
          MGG++ KKSHSSFS FSF KS+  RKGDHYDHGG+W DE  RS KVWPSDEDKAHHWVAE
Sbjct: 1  MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPN 92
          PGIDRKAKDYIDRIYRNRVFESERQTVTI  N
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTIPTN 92

[Close]

BLAST of CsGy6G002500 vs. TAIR 10
Match: AT3G05858.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 74.7 bits (182), Expect = 4.6e-14
Identity = 42/88 (47.73%), Postives = 56/88 (63.64%), Query Frame = 0


Query: 1  MGGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWVAE 60
          MGG  +  S   FS+FSFFK+RR  +    +  G+W D+   + K   SDEDK  +WVAE
Sbjct: 1  MGGKNRSHSSKRFSLFSFFKTRRSHR---VEADGSW-DDFGYTRKAMASDEDK-RYWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVT 89
          PGIDRKA  +I + +  RV ESERQT++
Sbjct: 61 PGIDRKASAFIAKFHATRVSESERQTLS 83

[Close]

BLAST of CsGy6G002500 vs. TAIR 10
Match: AT5G26620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.5 bits (140), Expect = 3.4e-09
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 25 RKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWVAEPGIDRKAKDYIDRIYRNRVFESER 84
          R   H     A  D++  + K W SDEDK  +WVAEPGIDRKA  +I + + +RV ESER
Sbjct: 5  RSSHHRVEADASWDDVIYTRKAWASDEDK-RYWVAEPGIDRKASAFIAKFHASRVSESER 64

Query: 85 QTV 88
          QT+
Sbjct: 65 QTL 66

The following BLAST results are available for this feature:

BLAST of CsGy6G002500 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy6G002500 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45870.1	1.39e-68	97.96	hypothetical protein Csa_004960 [Cucumis sativus]	[more]
KAA0035003.1	2.41e-58	89.69	hypothetical protein E6C27_scaffold57G00440 [Cucumis melo var. makuwa] >TYK02343...	[more]
KGN45869.1	9.81e-58	88.66	hypothetical protein Csa_005516 [Cucumis sativus]	[more]
KGN45868.1	1.03e-51	83.70	hypothetical protein Csa_004803 [Cucumis sativus]	[more]
KAG6592313.1	1.71e-51	81.91	hypothetical protein SDJN03_14659, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CsGy6G002500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7Y2	6.75e-69	97.96	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1	[more]
A0A0A0KBW1	5.56e-68	98.98	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1	[more]
A0A5A7SWT9	1.17e-58	89.69	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KAK6	4.75e-58	88.66	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1	[more]
A0A0A0K8V3	4.99e-52	83.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014880 PE=4 SV=1	[more]

BLAST of CsGy6G002500 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05858.1	4.6e-14	47.73	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G26620.1	3.4e-09	49.21	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..48
None	No IPR available	PANTHER	PTHR33511:SF17	RIBOSOMAL PROTEIN S12	coord: 1..88
None	No IPR available	PANTHER	PTHR33511	OS06G0632400 PROTEIN	coord: 1..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G002500.2	CsGy6G002500.2	mRNA