CsGy6G002180 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G002180
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	40S ribosomal protein S26
Location	Gy14Chr6: 1570646 .. 1572042 (-)
RNA-Seq Expression	CsGy6G002180
Synteny	CsGy6G002180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGACCTAATCTCTCACCCCTTTCTTTCGATCCTTCGTTCTCCTCTAGTATTCTGCTTAACAATTTCTCTTTTGGTTCAGACTTTCAAGCGCAGGAATGGTGGACGCAACAAGCATGGACGTGGCCACGTGAAATTCATCCGCTGTTCCAACTGCGGCAAATGCTGCCCTAAGGTACCTAGGGTTCTTTCCCCCCCTATTTTGATGTTCCGTCTATTTGCATCTCAATGTATAACCATCATCGAATTAAGACGCGAGTAATTCGCATCCTGGGTTTTACTTTTCCTGTTGTGTTGTTGGTATTCTGGGTTGATTTCGTCTCGTATTTGCAATTACCGGTTGAACTATCGTTTGGTATAGAATATCTAATTATGTGGTTTCTTCTTGGGGTGGATAGGATAAGGCAATCAAGAGGTTCCTTGTCAGGAACATTGTGGAGCAGGCAGCTGTTAGGGATGTTCAGGAAGCCTGTGTTTATGATCGTATGATCCTTTTCTTGAGTGTATTTTTCCTTTATGTTCCAATGTTGCAAGTTTTGAGTGATTTTTTGTATGATTGTTTTTTGATACAGAATACACTCTTCCTAAGCTTTATGCCAAGATGCAGTACTGTGTTTCTTGTGCTATTCACTCTCACGTTGTGAGGGTTCGATCACGCACTGACAGGAGGAAACGTGAGCCCCCACAGCGCTTCATTAGACGCAGGGTATATTTTGAATCTATTTACTTTTCTTTCTTGGTTCTTTCGTTTGATTAATTTTCCTAGATTGATATGACTATTTATATGAGCTCGTGTATGATTAGTCTTTCTAGCTTTTGCCAATGGATGATTAGCTTCTCATTAGCAATTTTTGTGTGATTTGGTTGCTAAGAATGGAGTCTTTATGTAAATATTGCCATTCCTCACTGTTGTATGGCCGTATCGTAAGCCTATTGATACGTGTTTAATGCTGACCCTTTAACATATCTTCACAAAGCTTACTTTTTTCTATTTATCCATTTTTGTTAATGTTAATCATGATGTGTGTAATGACTGTTGTCATGTTGCTGGGTTAATGCACATTCTTTGCCATTGTTTTTTAACAAAGTCTCACAATTTCAAAATTGAAGGTTGCTAATTCTGTATACTTTGGTATTTAATGGAACATGAGGCAACGTTTTGCTGTTTTGTTAGTATTTACGTAGAAATTCATGGTTTTGTTGCTGCTCACTCAATTTTAAATCTACTTATATTGTTTTATTTTTTTATTTGCAAATACAAATACGCTTCTGTTGTTGGTGCTTGTTTAATTAGTTGAATTATATCCATGTTTTTCCTCAGGACGATGCACCAAAGCCTGGACAGGCAGGACAGAACCCTCGTGTTGGAGCTGGTGGAGCTCCACCCCGTGCTTGA

mRNA sequence

ATGACTTTCAAGCGCAGGAATGGTGGACGCAACAAGCATGGACGTGGCCACGTGAAATTCATCCGCTGTTCCAACTGCGGCAAATGCTGCCCTAAGGATAAGGCAATCAAGAGGTTCCTTGTCAGGAACATTGTGGAGCAGGCAGCTGTTAGGGATGTTCAGGAAGCCTGTGTTTATGATCAATACACTCTTCCTAAGCTTTATGCCAAGATGCAGTACTGTGTTTCTTGTGCTATTCACTCTCACGTTGTGAGGGTTCGATCACGCACTGACAGGAGGAAACGTGAGCCCCCACAGCGCTTCATTAGACGCAGGGACGATGCACCAAAGCCTGGACAGGCAGGACAGAACCCTCGTGTTGGAGCTGGTGGAGCTCCACCCCGTGCTTGA

Coding sequence (CDS)

ATGACTTTCAAGCGCAGGAATGGTGGACGCAACAAGCATGGACGTGGCCACGTGAAATTCATCCGCTGTTCCAACTGCGGCAAATGCTGCCCTAAGGATAAGGCAATCAAGAGGTTCCTTGTCAGGAACATTGTGGAGCAGGCAGCTGTTAGGGATGTTCAGGAAGCCTGTGTTTATGATCAATACACTCTTCCTAAGCTTTATGCCAAGATGCAGTACTGTGTTTCTTGTGCTATTCACTCTCACGTTGTGAGGGTTCGATCACGCACTGACAGGAGGAAACGTGAGCCCCCACAGCGCTTCATTAGACGCAGGGACGATGCACCAAAGCCTGGACAGGCAGGACAGAACCCTCGTGTTGGAGCTGGTGGAGCTCCACCCCGTGCTTGA

Protein sequence

MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRVGAGGAPPRA*

Homology

[Close]

BLAST of CsGy6G002180 vs. ExPASy Swiss-Prot
Match: Q9LYK9 (40S ribosomal protein S26-3 OS=Arabidopsis thaliana OX=3702 GN=RPS26C PE=2 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 2.2e-53
Identity = 108/131 (82.44%), Postives = 114/131 (87.02%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRV 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKP Q GQ PR 
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPAQPGQAPR- 120

Query: 121 GAGGAP--PRA 130
            AGGAP  PRA
Sbjct: 121 PAGGAPAAPRA 130

[Close]

BLAST of CsGy6G002180 vs. ExPASy Swiss-Prot
Match: P49206 (40S ribosomal protein S26-1 OS=Arabidopsis thaliana OX=3702 GN=RPS26A PE=2 SV=2)

HSP 1 Score: 207.6 bits (527), Expect = 8.5e-53
Identity = 102/125 (81.60%), Postives = 108/125 (86.40%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRV 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKPGQ GQ PR 
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRKEDTPKPGQPGQAPRP 120

Query: 121 GAGGA 126
              GA
Sbjct: 121 AGPGA 125

[Close]

BLAST of CsGy6G002180 vs. ExPASy Swiss-Prot
Match: Q8LPJ7 (40S ribosomal protein S26-2 OS=Arabidopsis thaliana OX=3702 GN=RPS26B PE=2 SV=2)

HSP 1 Score: 206.8 bits (525), Expect = 1.4e-52
Identity = 103/129 (79.84%), Postives = 109/129 (84.50%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRV 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKPGQ GQ PR 
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPGQPGQAPRP 120

Query: 121 GAGGAPPRA 130
              GA   A
Sbjct: 121 AGPGAAAAA 129

[Close]

BLAST of CsGy6G002180 vs. ExPASy Swiss-Prot
Match: P49216 (40S ribosomal protein S26 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS26 PE=2 SV=2)

HSP 1 Score: 191.0 bits (484), Expect = 8.2e-48
Identity = 93/126 (73.81%), Postives = 102/126 (80.95%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVK+IRCSNC KCCPKDKAIKRF VRNIVEQAA+RDVQEACV+D
Sbjct: 1   MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRV 120
            Y LPKLYAK+ +CVSCAIH+H+VRVRSR +RR R PP+RF RR D    P   G  P  
Sbjct: 61  GYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRRPPERFRRREDRPQGPRPGGGAPAP 120

Query: 121 GAGGAP 127
           G   AP
Sbjct: 121 GGAAAP 126

[Close]

BLAST of CsGy6G002180 vs. ExPASy Swiss-Prot
Match: O45499 (40S ribosomal protein S26 OS=Caenorhabditis elegans OX=6239 GN=rps-26 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.3e-37
Identity = 79/118 (66.95%), Postives = 90/118 (76.27%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRN GRNK  RGHV FIRC+NCG+CCPKDKAIK+F+VRNIVE AAVRD+ +A  Y 
Sbjct: 1   MTFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYT 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNP 119
           QY LPKLY K+ YC++CAIHS VVR RSR  RR R PP RF  +R  A +PG  G  P
Sbjct: 61  QYALPKLYHKLHYCIACAIHSKVVRNRSREARRDRNPPPRF-GQRAAAARPGAPGPRP 117

[Close]

BLAST of CsGy6G002180 vs. NCBI nr
Match: XP_004138397.1 (40S ribosomal protein S26-3 [Cucumis sativus] >KGN45831.1 hypothetical protein Csa_005395 [Cucumis sativus])

HSP 1 Score: 266 bits (679), Expect = 1.04e-89
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRV 120

Query: 121 GAGGAPPRA 129
           GAGGAPPRA
Sbjct: 121 GAGGAPPRA 129

[Close]

BLAST of CsGy6G002180 vs. NCBI nr
Match: XP_008456772.1 (PREDICTED: 40S ribosomal protein S26-3-like [Cucumis melo] >KAA0052010.1 40S ribosomal protein S26-3-like [Cucumis melo var. makuwa] >TYK04549.1 40S ribosomal protein S26-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 262 bits (669), Expect = 3.50e-88
Identity = 127/129 (98.45%), Postives = 127/129 (98.45%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRR REPPQRFIRRRDDAPKPGQ GQNPRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDAPKPGQPGQNPRV 120

Query: 121 GAGGAPPRA 129
           GAGGAPPRA
Sbjct: 121 GAGGAPPRA 129

[Close]

BLAST of CsGy6G002180 vs. NCBI nr
Match: XP_038884330.1 (40S ribosomal protein S26-3-like [Benincasa hispida] >XP_038884435.1 40S ribosomal protein S26-3-like [Benincasa hispida])

HSP 1 Score: 259 bits (661), Expect = 5.82e-87
Identity = 126/129 (97.67%), Postives = 126/129 (97.67%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRR REPPQRFIRRRDDAPKPGQ GQ PRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDAPKPGQPGQAPRV 120

Query: 121 GAGGAPPRA 129
           GAGGAPPRA
Sbjct: 121 GAGGAPPRA 129

[Close]

BLAST of CsGy6G002180 vs. NCBI nr
Match: XP_022939944.1 (40S ribosomal protein S26-3-like [Cucurbita moschata] >XP_022993709.1 40S ribosomal protein S26-3-like [Cucurbita maxima] >XP_023549643.1 40S ribosomal protein S26-3-like [Cucurbita pepo subsp. pepo] >KAG6578479.1 40S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 253 bits (647), Expect = 8.22e-85
Identity = 125/130 (96.15%), Postives = 127/130 (97.69%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKR+PPQRFIRRR+DAPKPGQ GQ PRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRREDAPKPGQPGQAPRV 120

Query: 121 GAG-GAPPRA 129
           GAG GAPPRA
Sbjct: 121 GAGPGAPPRA 130

[Close]

BLAST of CsGy6G002180 vs. NCBI nr
Match: XP_022134511.1 (40S ribosomal protein S26-1-like [Momordica charantia])

HSP 1 Score: 251 bits (640), Expect = 8.99e-84
Identity = 122/126 (96.83%), Postives = 123/126 (97.62%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKR+PPQRFIRRRDDAPKPGQ GQ PRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRRDDAPKPGQPGQAPRV 120

Query: 121 GAGGAP 126
           GAG AP
Sbjct: 121 GAGTAP 126

[Close]

BLAST of CsGy6G002180 vs. ExPASy TrEMBL
Match: A0A0A0KDG9 (40S ribosomal protein S26 OS=Cucumis sativus OX=3659 GN=Csa_6G014520 PE=3 SV=1)

HSP 1 Score: 266 bits (679), Expect = 5.06e-90
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRV 120

Query: 121 GAGGAPPRA 129
           GAGGAPPRA
Sbjct: 121 GAGGAPPRA 129

[Close]

BLAST of CsGy6G002180 vs. ExPASy TrEMBL
Match: A0A5A7UA01 (40S ribosomal protein S26 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001770 PE=3 SV=1)

HSP 1 Score: 262 bits (669), Expect = 1.70e-88
Identity = 127/129 (98.45%), Postives = 127/129 (98.45%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRR REPPQRFIRRRDDAPKPGQ GQNPRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDAPKPGQPGQNPRV 120

Query: 121 GAGGAPPRA 129
           GAGGAPPRA
Sbjct: 121 GAGGAPPRA 129

[Close]

BLAST of CsGy6G002180 vs. ExPASy TrEMBL
Match: A0A1S3C4P8 (40S ribosomal protein S26 OS=Cucumis melo OX=3656 GN=LOC103496615 PE=3 SV=1)

HSP 1 Score: 262 bits (669), Expect = 1.70e-88
Identity = 127/129 (98.45%), Postives = 127/129 (98.45%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRR REPPQRFIRRRDDAPKPGQ GQNPRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDAPKPGQPGQNPRV 120

Query: 121 GAGGAPPRA 129
           GAGGAPPRA
Sbjct: 121 GAGGAPPRA 129

[Close]

BLAST of CsGy6G002180 vs. ExPASy TrEMBL
Match: A0A6J1K0V7 (40S ribosomal protein S26 OS=Cucurbita maxima OX=3661 GN=LOC111489626 PE=3 SV=1)

HSP 1 Score: 253 bits (647), Expect = 3.98e-85
Identity = 125/130 (96.15%), Postives = 127/130 (97.69%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKR+PPQRFIRRR+DAPKPGQ GQ PRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRREDAPKPGQPGQAPRV 120

Query: 121 GAG-GAPPRA 129
           GAG GAPPRA
Sbjct: 121 GAGPGAPPRA 130

[Close]

BLAST of CsGy6G002180 vs. ExPASy TrEMBL
Match: A0A6J1FIL8 (40S ribosomal protein S26 OS=Cucurbita moschata OX=3662 GN=LOC111445657 PE=3 SV=1)

HSP 1 Score: 253 bits (647), Expect = 3.98e-85
Identity = 125/130 (96.15%), Postives = 127/130 (97.69%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKR+PPQRFIRRR+DAPKPGQ GQ PRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRREDAPKPGQPGQAPRV 120

Query: 121 GAG-GAPPRA 129
           GAG GAPPRA
Sbjct: 121 GAGPGAPPRA 130

[Close]

BLAST of CsGy6G002180 vs. TAIR 10
Match: AT3G56340.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 209.5 bits (532), Expect = 1.6e-54
Identity = 108/131 (82.44%), Postives = 114/131 (87.02%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRV 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKP Q GQ PR 
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPAQPGQAPR- 120

Query: 121 GAGGAP--PRA 130
            AGGAP  PRA
Sbjct: 121 PAGGAPAAPRA 130

[Close]

BLAST of CsGy6G002180 vs. TAIR 10
Match: AT2G40590.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 207.6 bits (527), Expect = 6.0e-54
Identity = 102/125 (81.60%), Postives = 108/125 (86.40%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRV 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKPGQ GQ PR 
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRKEDTPKPGQPGQAPRP 120

Query: 121 GAGGA 126
              GA
Sbjct: 121 AGPGA 125

[Close]

BLAST of CsGy6G002180 vs. TAIR 10
Match: AT2G40510.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 206.8 bits (525), Expect = 1.0e-53
Identity = 103/129 (79.84%), Postives = 109/129 (84.50%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRV 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKPGQ GQ PR 
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPGQPGQAPRP 120

Query: 121 GAGGAPPRA 130
              GA   A
Sbjct: 121 AGPGAAAAA 129

The following BLAST results are available for this feature:

BLAST of CsGy6G002180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LYK9	2.2e-53	82.44	40S ribosomal protein S26-3 OS=Arabidopsis thaliana OX=3702 GN=RPS26C PE=2 SV=1	[more]
P49206	8.5e-53	81.60	40S ribosomal protein S26-1 OS=Arabidopsis thaliana OX=3702 GN=RPS26A PE=2 SV=2	[more]
Q8LPJ7	1.4e-52	79.84	40S ribosomal protein S26-2 OS=Arabidopsis thaliana OX=3702 GN=RPS26B PE=2 SV=2	[more]
P49216	8.2e-48	73.81	40S ribosomal protein S26 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS26 PE=2...	[more]
O45499	1.3e-37	66.95	40S ribosomal protein S26 OS=Caenorhabditis elegans OX=6239 GN=rps-26 PE=3 SV=1	[more]

BLAST of CsGy6G002180 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138397.1	1.04e-89	100.00	40S ribosomal protein S26-3 [Cucumis sativus] >KGN45831.1 hypothetical protein C...	[more]
XP_008456772.1	3.50e-88	98.45	PREDICTED: 40S ribosomal protein S26-3-like [Cucumis melo] >KAA0052010.1 40S rib...	[more]
XP_038884330.1	5.82e-87	97.67	40S ribosomal protein S26-3-like [Benincasa hispida] >XP_038884435.1 40S ribosom...	[more]
XP_022939944.1	8.22e-85	96.15	40S ribosomal protein S26-3-like [Cucurbita moschata] >XP_022993709.1 40S riboso...	[more]
XP_022134511.1	8.99e-84	96.83	40S ribosomal protein S26-1-like [Momordica charantia]	[more]

BLAST of CsGy6G002180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDG9	5.06e-90	100.00	40S ribosomal protein S26 OS=Cucumis sativus OX=3659 GN=Csa_6G014520 PE=3 SV=1	[more]
A0A5A7UA01	1.70e-88	98.45	40S ribosomal protein S26 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3C4P8	1.70e-88	98.45	40S ribosomal protein S26 OS=Cucumis melo OX=3656 GN=LOC103496615 PE=3 SV=1	[more]
A0A6J1K0V7	3.98e-85	96.15	40S ribosomal protein S26 OS=Cucurbita maxima OX=3661 GN=LOC111489626 PE=3 SV=1	[more]
A0A6J1FIL8	3.98e-85	96.15	40S ribosomal protein S26 OS=Cucurbita moschata OX=3662 GN=LOC111445657 PE=3 SV=...	[more]

BLAST of CsGy6G002180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56340.1	1.6e-54	82.44	Ribosomal protein S26e family protein	[more]
AT2G40590.1	6.0e-54	81.60	Ribosomal protein S26e family protein	[more]
AT2G40510.1	1.0e-53	79.84	Ribosomal protein S26e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038551	Ribosomal protein S26e superfamily	GENE3D	3.30.1740.20	Ribosomal protein S26e	coord: 1..115 e-value: 1.1E-58 score: 198.6
IPR000892	Ribosomal protein S26e	PFAM	PF01283	Ribosomal_S26e	coord: 1..106 e-value: 1.2E-54 score: 183.3
IPR000892	Ribosomal protein S26e	PANTHER	PTHR12538	40S RIBOSOMAL PROTEIN S26	coord: 1..128
IPR000892	Ribosomal protein S26e	PROSITE	PS00733	RIBOSOMAL_S26E	coord: 73..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..129
None	No IPR available	PANTHER	PTHR12538:SF16	40S RIBOSOMAL PROTEIN S26	coord: 1..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G002180.2	CsGy6G002180.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome