CsGy6G002080 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G002080
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	HIG1 domain-containing protein
Location	Gy14Chr6: 1500748 .. 1501815 (-)
RNA-Seq Expression	CsGy6G002080
Synteny	CsGy6G002080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGCTATCTTCTCCATCAAACTCATTAGTGTTTTTGTTCAGTAAACAGCAGCAACAACAATGGAAGCTATTCAAGCTTGGGTTTCAGAACACAAACTCACCACCATTGGTACTTTATTTCCCATTTCCCAATCTTTTTTCTTTACTCTCTTCCTAAATCTAATCACTTTGTTTTTGGGTTATACATTATAGGAGCTCTGTGGGCATCTGGGATTGGAGCATCGCTGGCCTATACCCGATCAAGAACTCCCCTCAAGCCAAGTCTCCGCCTTATTCATGCCAGGTTTAATTCCTCAAACTACTCTTCTCTTCTCTACATTTAGTATTGTGCAAAATAAAATAGTCATCATAGTGTATGTCCCCATATATCCCATGAGTATAGAGTAAATAGTCGTAGTGTAACTATTTCCCATTCTCTTTTTCTTATTCAAATTGAGAATGAAATATTAATTTGGTTTTGTTTGTAATTAGGATGCATGCTCAGGCATTGACCTTAGCGGTTCTTTCCGGCGCGGCCGTCTACCACTACTACGACAACAAAATTGGGAGAGACCGATCTGAAGCTCCTCCGGTTTCAGGGGGAGGGAAATGAAAGAATGGATAAGCGGAGAGTGGTATTGCTCTAAAGGAGGGATGAAGGATGAATCATTTTGTGTAAATGAAATTAAGGATGTTGATGAAAGATTATTAAGTTTGAATTAATGCATCGTCTGTAGTCTAAGTTCTAAAGCTTGGTTACTCTGAATTTTTCCAACTCTTAATTAAGTAGCATATATTTAACAGCCCTAAATTTCTAATACCACCGTGGCACTCTTGTTGGTTCGACACAATGATTTCACACTTCATTACCATTTTGCTCCTTGAAATAAATTGAGATGGATAGTAGAATTTGATAATAGCTAGTCTTTCTCTCCTTTACTTTTTTCAAACAACACTTTTGTCTCCTAAAGTAGAAATTGTTTGATCTTGTAGATAAGGTGTAGTGTTAGTGTCTAAAACTGACTGACAATTACTTATAAAACCCATTCACTATTATTTAAATGACAATCTTTCAAGGCAATGGTATTA

mRNA sequence

ATTGCTATCTTCTCCATCAAACTCATTAGTGTTTTTGTTCAGTAAACAGCAGCAACAACAATGGAAGCTATTCAAGCTTGGGTTTCAGAACACAAACTCACCACCATTGGAGCTCTGTGGGCATCTGGGATTGGAGCATCGCTGGCCTATACCCGATCAAGAACTCCCCTCAAGCCAAGTCTCCGCCTTATTCATGCCAGGATGCATGCTCAGGCATTGACCTTAGCGGTTCTTTCCGGCGCGGCCGTCTACCACTACTACGACAACAAAATTGGGAGAGACCGATCTGAAGCTCCTCCGGTTTCAGGGGGAGGGAAATGAAAGAATGGATAAGCGGAGAGTGGTATTGCTCTAAAGGAGGGATGAAGGATGAATCATTTTGTGTAAATGAAATTAAGGATGTTGATGAAAGATTATTAAGTTTGAATTAATGCATCGTCTGTAGTCTAAGTTCTAAAGCTTGGTTACTCTGAATTTTTCCAACTCTTAATTAAGTAGCATATATTTAACAGCCCTAAATTTCTAATACCACCGTGGCACTCTTGTTGGTTCGACACAATGATTTCACACTTCATTACCATTTTGCTCCTTGAAATAAATTGAGATGGATAGTAGAATTTGATAATAGCTAGTCTTTCTCTCCTTTACTTTTTTCAAACAACACTTTTGTCTCCTAAAGTAGAAATTGTTTGATCTTGTAGATAAGGTGTAGTGTTAGTGTCTAAAACTGACTGACAATTACTTATAAAACCCATTCACTATTATTTAAATGACAATCTTTCAAGGCAATGGTATTA

Coding sequence (CDS)

ATGGAAGCTATTCAAGCTTGGGTTTCAGAACACAAACTCACCACCATTGGAGCTCTGTGGGCATCTGGGATTGGAGCATCGCTGGCCTATACCCGATCAAGAACTCCCCTCAAGCCAAGTCTCCGCCTTATTCATGCCAGGATGCATGCTCAGGCATTGACCTTAGCGGTTCTTTCCGGCGCGGCCGTCTACCACTACTACGACAACAAAATTGGGAGAGACCGATCTGAAGCTCCTCCGGTTTCAGGGGGAGGGAAATGA

Protein sequence

MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYDNKIGRDRSEAPPVSGGGK*

Homology

[Close]

BLAST of CsGy6G002080 vs. NCBI nr
Match: XP_004138401.1 (uncharacterized protein LOC101218681 [Cucumis sativus] >KGN45820.1 hypothetical protein Csa_005574 [Cucumis sativus])

HSP 1 Score: 174 bits (442), Expect = 6.39e-55
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKIGRDRSEAPPVSGGGK 86
          AAVYHYYDNKIGRDRSEAPPVSGGGK
Sbjct: 61 AAVYHYYDNKIGRDRSEAPPVSGGGK 86

[Close]

BLAST of CsGy6G002080 vs. NCBI nr
Match: KAA0052029.1 (respiratory supercomplex factor 2-like protein [Cucumis melo var. makuwa] >TYK04531.1 respiratory supercomplex factor 2-like protein-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 167 bits (422), Expect = 7.21e-52
Identity = 82/86 (95.35%), Postives = 83/86 (96.51%), Query Frame = 0


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVSEHKLTTIGALWASG+GASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKIGRDRSEAPPVSGGGK 86
          AAVYHYYDNK G DRSEAPPVS GGK
Sbjct: 61 AAVYHYYDNKFGNDRSEAPPVSRGGK 86

[Close]

BLAST of CsGy6G002080 vs. NCBI nr
Match: XP_038886475.1 (uncharacterized protein LOC120076661 [Benincasa hispida])

HSP 1 Score: 146 bits (368), Expect = 1.21e-43
Identity = 73/84 (86.90%), Postives = 76/84 (90.48%), Query Frame = 0


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ WVSEHKLTTIGALWASGIGASLAYTRSRT LKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQVWVSEHKLTTIGALWASGIGASLAYTRSRTLLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKIGRDRSEAPPVSGG 84
          AAVYHYY++K+   RSEAP   GG
Sbjct: 61 AAVYHYYEDKLAGGRSEAPASPGG 84

[Close]

BLAST of CsGy6G002080 vs. NCBI nr
Match: KAG6578469.1 (hypothetical protein SDJN03_22917, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 143 bits (361), Expect = 1.55e-42
Identity = 71/79 (89.87%), Postives = 74/79 (93.67%), Query Frame = 0


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVS+HKLT+IGALWASGIGASLAYTRS TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSQHKLTSIGALWASGIGASLAYTRSTTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKIGRDRSEAP 79
          AAVYHYY+NK    RSEAP
Sbjct: 61 AAVYHYYENKSAGVRSEAP 79

[Close]

BLAST of CsGy6G002080 vs. NCBI nr
Match: KAG7016034.1 (BTB/POZ domain-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 143 bits (361), Expect = 3.43e-39
Identity = 71/79 (89.87%), Postives = 74/79 (93.67%), Query Frame = 0


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVS+HKLT+IGALWASGIGASLAYTRS TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSQHKLTSIGALWASGIGASLAYTRSTTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKIGRDRSEAP 79
          AAVYHYY+NK    RSEAP
Sbjct: 61 AAVYHYYENKSAGVRSEAP 79

[Close]

BLAST of CsGy6G002080 vs. ExPASy TrEMBL
Match: A0A0A0K7T4 (HIG1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013920 PE=4 SV=1)

HSP 1 Score: 174 bits (442), Expect = 3.09e-55
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKIGRDRSEAPPVSGGGK 86
          AAVYHYYDNKIGRDRSEAPPVSGGGK
Sbjct: 61 AAVYHYYDNKIGRDRSEAPPVSGGGK 86

[Close]

BLAST of CsGy6G002080 vs. ExPASy TrEMBL
Match: A0A5A7UEZ1 (Respiratory supercomplex factor 2-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001530 PE=4 SV=1)

HSP 1 Score: 167 bits (422), Expect = 3.49e-52
Identity = 82/86 (95.35%), Postives = 83/86 (96.51%), Query Frame = 0


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVSEHKLTTIGALWASG+GASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKIGRDRSEAPPVSGGGK 86
          AAVYHYYDNK G DRSEAPPVS GGK
Sbjct: 61 AAVYHYYDNKFGNDRSEAPPVSRGGK 86

[Close]

BLAST of CsGy6G002080 vs. ExPASy TrEMBL
Match: A0A7J7I509 (HIG1 domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_000926 PE=4 SV=1)

HSP 1 Score: 132 bits (332), Expect = 4.33e-38
Identity = 61/72 (84.72%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1   MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
           MEA+Q+WVSEHKLT+IG LWASGIGASLAY+R++TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 38  MEALQSWVSEHKLTSIGTLWASGIGASLAYSRAKTPLKPSLRLIHARMHAQALTLAVLSG 97

Query: 61  AAVYHYYDNKIG 72
           AAVYHYY+ ++G
Sbjct: 98  AAVYHYYEKRLG 109

[Close]

BLAST of CsGy6G002080 vs. ExPASy TrEMBL
Match: A0A5J5AU49 (HIG1 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_031517 PE=4 SV=1)

HSP 1 Score: 130 bits (327), Expect = 9.39e-38
Identity = 61/80 (76.25%), Postives = 69/80 (86.25%), Query Frame = 0


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEA+Q+WVSEHKLT+IG LWAS IGASLAY+R++TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEALQSWVSEHKLTSIGTLWASAIGASLAYSRAKTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKIGRDRSEAPP 80
          AA YHYY+ + G     A P
Sbjct: 61 AAAYHYYEKRAGEQGDNASP 80

[Close]

BLAST of CsGy6G002080 vs. ExPASy TrEMBL
Match: A0A6A6N2Z1 (HIG1 domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_014009 PE=4 SV=1)

HSP 1 Score: 127 bits (320), Expect = 1.34e-36
Identity = 59/78 (75.64%), Postives = 69/78 (88.46%), Query Frame = 0


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEA Q+WVSEHKLT+IGALWA+ +G SLAYTR++TPLKPSLRLIHARMHAQALTLAVLS 
Sbjct: 1  MEAFQSWVSEHKLTSIGALWATAVGGSLAYTRTKTPLKPSLRLIHARMHAQALTLAVLSS 60

Query: 61 AAVYHYYDNKIGRDRSEA 78
          AA+YHYY+ K G + + A
Sbjct: 61 AAIYHYYEKKQGENNAAA 78

[Close]

BLAST of CsGy6G002080 vs. TAIR 10
Match: AT3G05550.1 (Hypoxia-responsive family protein )

HSP 1 Score: 90.5 bits (223), Expect = 7.2e-19
Identity = 42/69 (60.87%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 2  EAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGA 61
          E I+ WVS+HKL T+G LW SGI  S+AY  S+  +K S+++IHAR+HAQALTLA L+GA
Sbjct: 9  EEIRKWVSDHKLRTVGCLWLSGITGSIAYNWSQPAMKTSVKIIHARLHAQALTLAALAGA 68

Query: 62 AVYHYYDNK 71
          AV  YYD+K
Sbjct: 69 AVVEYYDHK 77

[Close]

BLAST of CsGy6G002080 vs. TAIR 10
Match: AT5G27760.1 (Hypoxia-responsive family protein )

HSP 1 Score: 89.7 bits (221), Expect = 1.2e-18
Identity = 41/69 (59.42%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 4  IQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAV 63
          I+ W+ EHKL T+G LW SGI  S+AY  S+  +K S+R+IHAR+HAQALTLA L+GAA 
Sbjct: 11 IREWIIEHKLRTVGCLWLSGISGSIAYNWSKPAMKTSVRIIHARLHAQALTLAALAGAAA 70

Query: 64 YHYYDNKIG 73
            YYD+K G
Sbjct: 71 VEYYDHKSG 79

The following BLAST results are available for this feature:

BLAST of CsGy6G002080 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy6G002080 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138401.1	6.39e-55	100.00	uncharacterized protein LOC101218681 [Cucumis sativus] >KGN45820.1 hypothetical ...	[more]
KAA0052029.1	7.21e-52	95.35	respiratory supercomplex factor 2-like protein [Cucumis melo var. makuwa] >TYK04...	[more]
XP_038886475.1	1.21e-43	86.90	uncharacterized protein LOC120076661 [Benincasa hispida]	[more]
KAG6578469.1	1.55e-42	89.87	hypothetical protein SDJN03_22917, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7016034.1	3.43e-39	89.87	BTB/POZ domain-containing protein, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CsGy6G002080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7T4	3.09e-55	100.00	HIG1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013920 PE=4 S...	[more]
A0A5A7UEZ1	3.49e-52	95.35	Respiratory supercomplex factor 2-like protein OS=Cucumis melo var. makuwa OX=11...	[more]
A0A7J7I509	4.33e-38	84.72	HIG1 domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_000926 PE=4...	[more]
A0A5J5AU49	9.39e-38	76.25	HIG1 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_031517 PE=4 ...	[more]
A0A6A6N2Z1	1.34e-36	75.64	HIG1 domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_014009 PE=...	[more]

BLAST of CsGy6G002080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05550.1	7.2e-19	60.87	Hypoxia-responsive family protein	[more]
AT5G27760.1	1.2e-18	59.42	Hypoxia-responsive family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007667	Hypoxia induced protein, domain	PFAM	PF04588	HIG_1_N	coord: 10..59 e-value: 5.6E-9 score: 36.1
IPR007667	Hypoxia induced protein, domain	PROSITE	PS51503	HIG1	coord: 1..76 score: 20.645969
None	No IPR available	GENE3D	6.10.140.1320		coord: 13..73 e-value: 1.3E-6 score: 30.0
None	No IPR available	PANTHER	PTHR28018:SF3	RESPIRATORY SUPERCOMPLEX FACTOR 2, MITOCHONDRIAL	coord: 4..75
IPR040153	Respiratory supercomplex factor 2, mitochondrial	PANTHER	PTHR28018	RESPIRATORY SUPERCOMPLEX FACTOR 2, MITOCHONDRIAL	coord: 4..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G002080.2	CsGy6G002080.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0033617	mitochondrial cytochrome c oxidase assembly
cellular_component	GO:0031305	integral component of mitochondrial inner membrane
cellular_component	GO:0005746	mitochondrial respirasome