CsGy6G001240 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G001240
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	thylakoid lumenal 15 kDa protein 1, chloroplastic
Location	Gy14Chr6: 872242 .. 874321 (+)
RNA-Seq Expression	CsGy6G001240
Synteny	CsGy6G001240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGTTCGGTCGGTGGTGACATTATCGGTTATCCAATTCGAAAACGAAAACAAACTTTTGAATTTCAGCTTTCCGGAAATGGCTCTGCTCAATGCTTCATTATGTTGTTCCACTCCCAAAATTCCTTCAAGATCTCACCTCCTTCTTCCTCCCTCCATTTCCCTCCATTCTACTTCTCAGGTAACCTCCCCTTCTCCCTTCCCACTCCCATTTTCTTCTCCTTTATCTTCCAATGCTTTCATTTTACCCACTATATGAAGGTATTCAACCAACAACTTCAAGCTACAAGGAATTTCGTTCTTTCCCTTGGACAACCCACTTTCCTCGCTTTCGTTTCTGCCTCTTTGTTCCTCGCCGATCCTGCCCTAGCTTTTAAGGTTCATTTCCTCATTTTCATTCTCATTTCTCTATTGTATTGTACTCTACTGTATGATTGATTTTTGGCTATTAGGGCGGAGGTCCTTACGGAGCTGGGGTCACTAGAGGTCAGGATCTCTCTGGGAAAGATTTCAGTGGGAAGACCTTAATCAAGCAAGATTTCAAAACGGTTTCAACCGAAGTTTCATTATTTCTATTGTTTCTACTTGTACTACAGTAATATGTGGTTGTGACATTGCTTTTATTTTTCTGTTTCTTTTGTATTAGTCTATTTTACGGCAAGCTAATTTTAAAGGTGCCAACTTATTAGGTGCTAGCTTCTTCGATGCTGATTTAACAGGTTTAACTCATTTTAATCAACTGCATACTCTTATAATTCAGGATTTTCTATCCAGTTAATGCTGACTTCTATTATTTCTTCCATTGTCTAATTGTTAGGGGCGGATCTTTCAGATGCTGATCTCAGAGGTGCAGATTTTTCTCTTGCCAATGTTACCAAGGTGGTGATTGTTTGATATGTGTGCAATTAAATGCTTCTTTGTTTAATCTTTAGTTTGCCCCTTTTCAGATTTTCAAATTTGAATGATTGTATTATTATATACATAACAAGTTAGTTAGGACTGGAGGTCAAATTTTGCAATCTCAGTCTTGAATGTTAAAAAATTTGCTCAATTACGATAGGAAACTACTTAGCAAAAAGTATTCATGTGATACAACAACCACGAACTTTGTATGCAGTTTGAGATGCAGAGTAACCTACAGTTTTTATCTGCGGTTTTACATGCAAGCGCTGTGCTTTGATGTTAGAAAACAGTGAAGTTGTAACTTTATACTGAATGGTTGTTTTTTTCTGCTTTGAGCAGGCAAATTTAAGCAATGCCAACCTTGAAGGTGCACTGGCCACGGGAAATACCTCTTTCCGTGGTTCAACAATAAACGGCGCTGGTATGGAAACCCAACATCTATTTTGCTTTTAGTATCTCATCGGGGATCCTCTTTTTTTTTTTATCCGTTTACTCTCTCTCCCCCCACGTTCAATTAATACTTTATATATTTTCCAAAGGTACTCTATACATATTTGAAAGCTTCTATTAGTTCATTATAAGACCTAAAAGTCGAGTTTAGGAGATTTGAAAGGCGAGAATGGCCAAGATTGATCTTAGATACACAAATAGAATCTGATTCTCTTTTTCATAGTATATTTCTTGTAAACCCAACATTTATGTGCTTTTAGTATCTCATTGGGGATTCTCTCATATCCATAATTATTTTAGATGCCATGAGGCATTAACATAGGTTATTATTCCAACCTCTCTATGCTTCAAAAGAAATTTGACTTTTAGGCATTTAGCTGAAACTAATTTTTGTCAGCAATGTTCTTAGACGAAAGAGTAATAGGAAAATGCAATTCAACTAACAATGAATATAATTTTCTGAAAACTAACAATGGGGTGGTTGTACGAAGAAATACTTGTGCATAATTTACCTCATAATGGCAGACTTCACTGACGTGCCATTGAGAGAGGATCAGCGGGAATACCTTTGCAAAGTTGCAGATGGGTAAAAACAAATTCTTGTGTTTATTAGGTTTGACTGTAAATGGTTCATGATAAATAGAACAGGATACTTATTCATTTTTGTCTACAGGGTAAACCCAACTACTGGAAATGCAACCCGAGAGACCTTGCTCTGTGATTGA

mRNA sequence

ATGGGGGTTCGGTCGGTGGTGACATTATCGGTTATCCAATTCGAAAACGAAAACAAACTTTTGAATTTCAGCTTTCCGGAAATGGCTCTGCTCAATGCTTCATTATGTTGTTCCACTCCCAAAATTCCTTCAAGATCTCACCTCCTTCTTCCTCCCTCCATTTCCCTCCATTCTACTTCTCAGGTATTCAACCAACAACTTCAAGCTACAAGGAATTTCGTTCTTTCCCTTGGACAACCCACTTTCCTCGCTTTCGTTTCTGCCTCTTTGTTCCTCGCCGATCCTGCCCTAGCTTTTAAGGGCGGAGGTCCTTACGGAGCTGGGGTCACTAGAGGTCAGGATCTCTCTGGGAAAGATTTCAGTGGGAAGACCTTAATCAAGCAAGATTTCAAAACGTCTATTTTACGGCAAGCTAATTTTAAAGGTGCCAACTTATTAGGTGCTAGCTTCTTCGATGCTGATTTAACAGGGGCGGATCTTTCAGATGCTGATCTCAGAGGTGCAGATTTTTCTCTTGCCAATGTTACCAAGGCAAATTTAAGCAATGCCAACCTTGAAGGTGCACTGGCCACGGGAAATACCTCTTTCCGTGGTTCAACAATAAACGGCGCTGACTTCACTGACGTGCCATTGAGAGAGGATCAGCGGGAATACCTTTGCAAAGTTGCAGATGGGGTAAACCCAACTACTGGAAATGCAACCCGAGAGACCTTGCTCTGTGATTGA

Coding sequence (CDS)

ATGGGGGTTCGGTCGGTGGTGACATTATCGGTTATCCAATTCGAAAACGAAAACAAACTTTTGAATTTCAGCTTTCCGGAAATGGCTCTGCTCAATGCTTCATTATGTTGTTCCACTCCCAAAATTCCTTCAAGATCTCACCTCCTTCTTCCTCCCTCCATTTCCCTCCATTCTACTTCTCAGGTATTCAACCAACAACTTCAAGCTACAAGGAATTTCGTTCTTTCCCTTGGACAACCCACTTTCCTCGCTTTCGTTTCTGCCTCTTTGTTCCTCGCCGATCCTGCCCTAGCTTTTAAGGGCGGAGGTCCTTACGGAGCTGGGGTCACTAGAGGTCAGGATCTCTCTGGGAAAGATTTCAGTGGGAAGACCTTAATCAAGCAAGATTTCAAAACGTCTATTTTACGGCAAGCTAATTTTAAAGGTGCCAACTTATTAGGTGCTAGCTTCTTCGATGCTGATTTAACAGGGGCGGATCTTTCAGATGCTGATCTCAGAGGTGCAGATTTTTCTCTTGCCAATGTTACCAAGGCAAATTTAAGCAATGCCAACCTTGAAGGTGCACTGGCCACGGGAAATACCTCTTTCCGTGGTTCAACAATAAACGGCGCTGACTTCACTGACGTGCCATTGAGAGAGGATCAGCGGGAATACCTTTGCAAAGTTGCAGATGGGGTAAACCCAACTACTGGAAATGCAACCCGAGAGACCTTGCTCTGTGATTGA

Protein sequence

MGVRSVVTLSVIQFENENKLLNFSFPEMALLNASLCCSTPKIPSRSHLLLPPSISLHSTSQVFNQQLQATRNFVLSLGQPTFLAFVSASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGANLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD*

Homology

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BLAST of CsGy6G001240 vs. ExPASy Swiss-Prot
Match: O22160 (Thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g44920 PE=1 SV=2)

HSP 1 Score: 279.6 bits (714), Expect = 3.3e-74
Identity = 157/224 (70.09%), Postives = 171/224 (76.34%), Query Frame = 0


Query: 30  LLNASL--CCSTPKIPSRSHLLLPPSISLHSTSQVFNQQ------LQATRNFVLSLGQP- 89
           L N SL  CC+  + PS   L  P S S H   +    Q          R+ V SLG+  
Sbjct: 4   LSNVSLFSCCNISQKPS---LFSPSSRSSHCPIRCSQSQEGKEVVTSPLRSVVWSLGEEV 63

Query: 90  ---TFLAFVSASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQ 149
              +  A VSASLF  DPALAFKGGGPYG GVTRGQDLSGKDFSG+TLI+QDFKTSILRQ
Sbjct: 64  SKRSLFALVSASLFFVDPALAFKGGGPYGQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQ 123

Query: 150 ANFKGANLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFR 209
           ANFKGA LLGASFFDADLTGADLS+ADLRGADFSLANVTK NL+NANLEGA  TGNTSF+
Sbjct: 124 ANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATVTGNTSFK 183

Query: 210 GSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 242
           GS I GADFTDVPLR+DQR YLCKVADGVN TTGNATR+TLLC+
Sbjct: 184 GSNITGADFTDVPLRDDQRVYLCKVADGVNATTGNATRDTLLCN 224

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BLAST of CsGy6G001240 vs. ExPASy Swiss-Prot
Match: B1WVN5 (Pentapeptide repeat protein Rfr32 OS=Crocosphaera subtropica (strain ATCC 51142 / BH68) OX=43989 GN=rfr32 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.3e-14
Identity = 55/126 (43.65%), Postives = 71/126 (56.35%), Query Frame = 0


Query: 115 LSGKDFSGKTLIKQDFKTSILRQANFKGANLLGASFFDADLTGADLSDADLRGADFSLAN 174
           L G+DFSGK+L    F  + L  +NF  A+L GA F  + L GADL  ADL      L +
Sbjct: 54  LIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTS 113

Query: 175 VTKANLSNANLEGALATGNTSFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNAT 234
              A+L+NA L  A+    T F  + I GADF+   L   + + LC  ADGVNP TG +T
Sbjct: 114 FKGADLTNAVLTEAIMM-RTKFDDAKITGADFSLAVLDVYEVDKLCDRADGVNPKTGVST 173

Query: 235 RETLLC 241
           RE+L C
Sbjct: 174 RESLGC 178

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BLAST of CsGy6G001240 vs. ExPASy Swiss-Prot
Match: Q8H1Q1 (Thylakoid lumenal protein TL20.3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TL20.3 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.3e-09
Identity = 47/141 (33.33%), Postives = 72/141 (51.06%), Query Frame = 0


Query: 103 GPYGAGVTR---GQDLSGKDFSGKTLIKQDFKTSILRQANFKGANLLGASFFDADLTGAD 162
           G +G G        DLS    S +   + +F ++ +R+++F G+   GA    A    A+
Sbjct: 101 GEFGIGSAAQYGSADLSKTVHSNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKAN 160

Query: 163 LSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTINGADFTDVPLREDQREYL 222
            S ADL         + +ANL+NA L  ++ T  +   G+ I GADF+D  +   Q++ L
Sbjct: 161 FSGADLSDTLMDRMVLNEANLTNAVLVRSVLT-RSDLGGAKIEGADFSDAVIDLLQKQAL 220

Query: 223 CKVADGVNPTTGNATRETLLC 241
           CK A G NP TG  TR++L C
Sbjct: 221 CKYATGTNPLTGVDTRKSLGC 240

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BLAST of CsGy6G001240 vs. ExPASy Swiss-Prot
Match: Q9SE95 (FH protein interacting protein FIP2 OS=Arabidopsis thaliana OX=3702 GN=FIP2 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.9e-08
Identity = 43/111 (38.74%), Postives = 54/111 (48.65%), Query Frame = 0


Query: 111 RGQDLSGKDFSGKTLIKQDFKTSILRQANFKGANLLGASFFDADLTGADLSDADLRGADF 170
           R  D  G  F    L + +F ++ LR A   G NL  A+  DA L G     ADLR A  
Sbjct: 174 RNADAEGSIFHNAILRECEFTSANLRGALLAGTNLQSANLQDACLVGCSFCGADLRTAHL 233

Query: 171 SLANVTKANLSNANLEGALATG----NTSFRGSTINGADFTDVPLREDQRE 218
             A++T ANL  ANLEGA   G    N +F+G+ +  A    V LRE   E
Sbjct: 234 QNADLTNANLEGANLEGANLKGAKLSNANFKGANLQRAYLRHVNLREAHME 284

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BLAST of CsGy6G001240 vs. ExPASy Swiss-Prot
Match: P73709 (Uncharacterized protein slr1819 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=slr1819 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.9e-07
Identity = 44/116 (37.93%), Postives = 64/116 (55.17%), Query Frame = 0


Query: 112 GQDLSGKDFSGKTL---------IKQDFK-------TSILRQANFKGANLLGASFFDADL 171
           G DL G D SG TL         ++Q+ K        +IL +A+ +GAN+ G     ADL
Sbjct: 114 GADLRGADLSGATLTGACLRGANMRQEKKGYYTNLQAAILGRADLQGANMKGVDLSRADL 173

Query: 172 TGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTINGADFTDVPL 212
           + A+L +A+LR  D     + KA+LS ANL+GAL T + +  G+ +NGAD  +  L
Sbjct: 174 SYANLKEANLRDVD-----LRKADLSYANLKGALLT-DANLSGAKLNGADLQNANL 223

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BLAST of CsGy6G001240 vs. NCBI nr
Match: XP_004138481.2 (thylakoid lumenal 15 kDa protein 1, chloroplastic [Cucumis sativus] >KGN45739.2 hypothetical protein Csa_005512 [Cucumis sativus])

HSP 1 Score: 469 bits (1208), Expect = 1.13e-166
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0


Query: 1   MGVRSVVTLSVIQFENENKLLNFSFPEMALLNASLCCSTPKIPSRSHLLLPPSISLHSTS 60
           MGVRSVVTLSVIQFENENKLLNFSFPEMALLNASLCCSTPKIPSRSHLLLPPSISLHSTS
Sbjct: 1   MGVRSVVTLSVIQFENENKLLNFSFPEMALLNASLCCSTPKIPSRSHLLLPPSISLHSTS 60

Query: 61  QVFNQQLQATRNFVLSLGQPTFLAFVSASLFLADPALAFKGGGPYGAGVTRGQDLSGKDF 120
           QVFNQQLQATRNFVLSLGQPTFLAFVSASLFLADPALAFKGGGPYGAGVTRGQDLSGKDF
Sbjct: 61  QVFNQQLQATRNFVLSLGQPTFLAFVSASLFLADPALAFKGGGPYGAGVTRGQDLSGKDF 120

Query: 121 SGKTLIKQDFKTSILRQANFKGANLLGASFFDADLTGADLSDADLRGADFSLANVTKANL 180
           SGKTLIKQDFKTSILRQANFKGANLLGASFFDADLTGADLSDADLRGADFSLANVTKANL
Sbjct: 121 SGKTLIKQDFKTSILRQANFKGANLLGASFFDADLTGADLSDADLRGADFSLANVTKANL 180

Query: 181 SNANLEGALATGNTSFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLC 240
           SNANLEGALATGNTSFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLC
Sbjct: 181 SNANLEGALATGNTSFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLC 240

[Close]

BLAST of CsGy6G001240 vs. NCBI nr
Match: XP_008441390.1 (PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Cucumis melo] >KAA0041434.1 thylakoid lumenal 15 kDa protein 1 [Cucumis melo var. makuwa] >TYK24308.1 thylakoid lumenal 15 kDa protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 397 bits (1021), Expect = 1.46e-138
Identity = 206/216 (95.37%), Postives = 209/216 (96.76%), Query Frame = 0


Query: 28  MALLNASLCCSTPKIPSRSHLLLPPSISL--HSTSQVFNQQLQATRNFVLSLGQPTFLAF 87
           MALLNASLCCSTPKI SRSHLLLPPSIS   HSTSQVFNQQL+ATRN VLSLGQPTFL F
Sbjct: 1   MALLNASLCCSTPKIHSRSHLLLPPSISPGPHSTSQVFNQQLEATRNLVLSLGQPTFLVF 60

Query: 88  VSASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGANL 147
           +SASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGA L
Sbjct: 61  ISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGAKL 120

Query: 148 LGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTINGAD 207
           LGASFFDADLTGADLSDADLRGADFSLANVTKANL+NANLEGALATGNTSFRGSTINGAD
Sbjct: 121 LGASFFDADLTGADLSDADLRGADFSLANVTKANLTNANLEGALATGNTSFRGSTINGAD 180

Query: 208 FTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 241
           FTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD
Sbjct: 181 FTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 216

[Close]

BLAST of CsGy6G001240 vs. NCBI nr
Match: XP_022133545.1 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 364 bits (934), Expect = 2.81e-125
Identity = 189/218 (86.70%), Postives = 198/218 (90.83%), Query Frame = 0


Query: 28  MALLNASLCCSTPKIPSRSHLLLPPSISLHSTSQVFNQQLQATRNFVLSLGQP----TFL 87
           MALLNASLCCST +IP   HL LPPSIS H T  V  QQL+A+RN +LS+G+     TFL
Sbjct: 1   MALLNASLCCSTSRIPPAPHLHLPPSISAHPTPPVLKQQLEASRNLILSVGESASKATFL 60

Query: 88  AFVSASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGA 147
           A +SASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGA
Sbjct: 61  ALLSASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGA 120

Query: 148 NLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTING 207
            LLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTI G
Sbjct: 121 KLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTIEG 180

Query: 208 ADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 241
           ADFTDVPLREDQREYLCKVADGVNPTTGNATR+TLLC+
Sbjct: 181 ADFTDVPLREDQREYLCKVADGVNPTTGNATRDTLLCN 218

[Close]

BLAST of CsGy6G001240 vs. NCBI nr
Match: XP_022955559.1 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X2 [Cucurbita moschata])

HSP 1 Score: 362 bits (930), Expect = 1.14e-124
Identity = 189/218 (86.70%), Postives = 199/218 (91.28%), Query Frame = 0


Query: 28  MALLNASLCCSTPKIPSRSHLLLPPSISLHSTSQVFNQQLQATRNFVLSLGQP----TFL 87
           MALLNASLC ST +IPSR HL LPPS+S  S  QV   Q++ATRNFVLS+G+     +FL
Sbjct: 1   MALLNASLCSSTCRIPSRPHLPLPPSVSAFSNPQVMKHQVEATRNFVLSVGESASKASFL 60

Query: 88  AFVSASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGA 147
           A +SASLFLADPALAFKGGGPYGAGVTRGQDL+GKDFSGKTLIKQDFKTSILRQANFKGA
Sbjct: 61  ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGA 120

Query: 148 NLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTING 207
            LLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGS ING
Sbjct: 121 KLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSIING 180

Query: 208 ADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 241
           ADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLC+
Sbjct: 181 ADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 218

[Close]

BLAST of CsGy6G001240 vs. NCBI nr
Match: XP_023552471.1 (thylakoid lumenal 15 kDa protein 1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 362 bits (929), Expect = 1.62e-124
Identity = 190/218 (87.16%), Postives = 199/218 (91.28%), Query Frame = 0


Query: 28  MALLNASLCCSTPKIPSRSHLLLPPSISLHSTSQVFNQQLQATRNFVLSLGQP----TFL 87
           MALLNASLC ST +IPSR HL LPPSIS  S  QV   Q++ATRNFVLS+G+     +FL
Sbjct: 1   MALLNASLCSSTCRIPSRPHLPLPPSISALSNPQVMKHQVEATRNFVLSVGESASKASFL 60

Query: 88  AFVSASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGA 147
           A +SASLFLADPALAFKGGGPYGAGVTRGQDL+GKDFSGKTLIKQDFKTSILRQANFKGA
Sbjct: 61  ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGA 120

Query: 148 NLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTING 207
            LLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGS ING
Sbjct: 121 KLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSIING 180

Query: 208 ADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 241
           ADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLC+
Sbjct: 181 ADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 218

[Close]

BLAST of CsGy6G001240 vs. ExPASy TrEMBL
Match: A0A0A0KA71 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G008700 PE=4 SV=1)

HSP 1 Score: 417 bits (1073), Expect = 7.79e-147
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0


Query: 28  MALLNASLCCSTPKIPSRSHLLLPPSISLHSTSQVFNQQLQATRNFVLSLGQPTFLAFVS 87
           MALLNASLCCSTPKIPSRSHLLLPPSISLHSTSQVFNQQLQATRNFVLSLGQPTFLAFVS
Sbjct: 1   MALLNASLCCSTPKIPSRSHLLLPPSISLHSTSQVFNQQLQATRNFVLSLGQPTFLAFVS 60

Query: 88  ASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGANLLG 147
           ASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGANLLG
Sbjct: 61  ASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGANLLG 120

Query: 148 ASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTINGADFT 207
           ASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTINGADFT
Sbjct: 121 ASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTINGADFT 180

Query: 208 DVPLREDQREYLCKVADGVNPTTGNATRETLLCD 241
           DVPLREDQREYLCKVADGVNPTTGNATRETLLCD
Sbjct: 181 DVPLREDQREYLCKVADGVNPTTGNATRETLLCD 214

[Close]

BLAST of CsGy6G001240 vs. ExPASy TrEMBL
Match: A0A5A7TDC5 (Thylakoid lumenal 15 kDa protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00790 PE=4 SV=1)

HSP 1 Score: 397 bits (1021), Expect = 7.05e-139
Identity = 206/216 (95.37%), Postives = 209/216 (96.76%), Query Frame = 0


Query: 28  MALLNASLCCSTPKIPSRSHLLLPPSISL--HSTSQVFNQQLQATRNFVLSLGQPTFLAF 87
           MALLNASLCCSTPKI SRSHLLLPPSIS   HSTSQVFNQQL+ATRN VLSLGQPTFL F
Sbjct: 1   MALLNASLCCSTPKIHSRSHLLLPPSISPGPHSTSQVFNQQLEATRNLVLSLGQPTFLVF 60

Query: 88  VSASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGANL 147
           +SASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGA L
Sbjct: 61  ISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGAKL 120

Query: 148 LGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTINGAD 207
           LGASFFDADLTGADLSDADLRGADFSLANVTKANL+NANLEGALATGNTSFRGSTINGAD
Sbjct: 121 LGASFFDADLTGADLSDADLRGADFSLANVTKANLTNANLEGALATGNTSFRGSTINGAD 180

Query: 208 FTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 241
           FTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD
Sbjct: 181 FTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 216

[Close]

BLAST of CsGy6G001240 vs. ExPASy TrEMBL
Match: A0A1S3B3C6 (thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103485520 PE=4 SV=1)

HSP 1 Score: 397 bits (1021), Expect = 7.05e-139
Identity = 206/216 (95.37%), Postives = 209/216 (96.76%), Query Frame = 0


Query: 28  MALLNASLCCSTPKIPSRSHLLLPPSISL--HSTSQVFNQQLQATRNFVLSLGQPTFLAF 87
           MALLNASLCCSTPKI SRSHLLLPPSIS   HSTSQVFNQQL+ATRN VLSLGQPTFL F
Sbjct: 1   MALLNASLCCSTPKIHSRSHLLLPPSISPGPHSTSQVFNQQLEATRNLVLSLGQPTFLVF 60

Query: 88  VSASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGANL 147
           +SASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGA L
Sbjct: 61  ISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGAKL 120

Query: 148 LGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTINGAD 207
           LGASFFDADLTGADLSDADLRGADFSLANVTKANL+NANLEGALATGNTSFRGSTINGAD
Sbjct: 121 LGASFFDADLTGADLSDADLRGADFSLANVTKANLTNANLEGALATGNTSFRGSTINGAD 180

Query: 208 FTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 241
           FTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD
Sbjct: 181 FTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 216

[Close]

BLAST of CsGy6G001240 vs. ExPASy TrEMBL
Match: A0A6J1BVJ8 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111006104 PE=4 SV=1)

HSP 1 Score: 364 bits (934), Expect = 1.36e-125
Identity = 189/218 (86.70%), Postives = 198/218 (90.83%), Query Frame = 0


Query: 28  MALLNASLCCSTPKIPSRSHLLLPPSISLHSTSQVFNQQLQATRNFVLSLGQP----TFL 87
           MALLNASLCCST +IP   HL LPPSIS H T  V  QQL+A+RN +LS+G+     TFL
Sbjct: 1   MALLNASLCCSTSRIPPAPHLHLPPSISAHPTPPVLKQQLEASRNLILSVGESASKATFL 60

Query: 88  AFVSASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGA 147
           A +SASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGA
Sbjct: 61  ALLSASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGA 120

Query: 148 NLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTING 207
            LLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTI G
Sbjct: 121 KLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTIEG 180

Query: 208 ADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 241
           ADFTDVPLREDQREYLCKVADGVNPTTGNATR+TLLC+
Sbjct: 181 ADFTDVPLREDQREYLCKVADGVNPTTGNATRDTLLCN 218

[Close]

BLAST of CsGy6G001240 vs. ExPASy TrEMBL
Match: A0A6J1GWM1 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457530 PE=4 SV=1)

HSP 1 Score: 362 bits (930), Expect = 5.53e-125
Identity = 189/218 (86.70%), Postives = 199/218 (91.28%), Query Frame = 0


Query: 28  MALLNASLCCSTPKIPSRSHLLLPPSISLHSTSQVFNQQLQATRNFVLSLGQP----TFL 87
           MALLNASLC ST +IPSR HL LPPS+S  S  QV   Q++ATRNFVLS+G+     +FL
Sbjct: 1   MALLNASLCSSTCRIPSRPHLPLPPSVSAFSNPQVMKHQVEATRNFVLSVGESASKASFL 60

Query: 88  AFVSASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGA 147
           A +SASLFLADPALAFKGGGPYGAGVTRGQDL+GKDFSGKTLIKQDFKTSILRQANFKGA
Sbjct: 61  ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGA 120

Query: 148 NLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTING 207
            LLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGS ING
Sbjct: 121 KLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSIING 180

Query: 208 ADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 241
           ADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLC+
Sbjct: 181 ADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 218

[Close]

BLAST of CsGy6G001240 vs. TAIR 10
Match: AT2G44920.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 279.6 bits (714), Expect = 2.3e-75
Identity = 157/224 (70.09%), Postives = 171/224 (76.34%), Query Frame = 0


Query: 30  LLNASL--CCSTPKIPSRSHLLLPPSISLHSTSQVFNQQ------LQATRNFVLSLGQP- 89
           L N SL  CC+  + PS   L  P S S H   +    Q          R+ V SLG+  
Sbjct: 4   LSNVSLFSCCNISQKPS---LFSPSSRSSHCPIRCSQSQEGKEVVTSPLRSVVWSLGEEV 63

Query: 90  ---TFLAFVSASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQ 149
              +  A VSASLF  DPALAFKGGGPYG GVTRGQDLSGKDFSG+TLI+QDFKTSILRQ
Sbjct: 64  SKRSLFALVSASLFFVDPALAFKGGGPYGQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQ 123

Query: 150 ANFKGANLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFR 209
           ANFKGA LLGASFFDADLTGADLS+ADLRGADFSLANVTK NL+NANLEGA  TGNTSF+
Sbjct: 124 ANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATVTGNTSFK 183

Query: 210 GSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 242
           GS I GADFTDVPLR+DQR YLCKVADGVN TTGNATR+TLLC+
Sbjct: 184 GSNITGADFTDVPLRDDQRVYLCKVADGVNATTGNATRDTLLCN 224

[Close]

BLAST of CsGy6G001240 vs. TAIR 10
Match: AT2G44920.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 210.7 bits (535), Expect = 1.3e-54
Identity = 125/187 (66.84%), Postives = 136/187 (72.73%), Query Frame = 0


Query: 30  LLNASL--CCSTPKIPSRSHLLLPPSISLHSTSQVFNQQ------LQATRNFVLSLGQP- 89
           L N SL  CC+  + PS   L  P S S H   +    Q          R+ V SLG+  
Sbjct: 4   LSNVSLFSCCNISQKPS---LFSPSSRSSHCPIRCSQSQEGKEVVTSPLRSVVWSLGEEV 63

Query: 90  ---TFLAFVSASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQ 149
              +  A VSASLF  DPALAFKGGGPYG GVTRGQDLSGKDFSG+TLI+QDFKTSILRQ
Sbjct: 64  SKRSLFALVSASLFFVDPALAFKGGGPYGQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQ 123

Query: 150 ANFKGANLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFR 205
           ANFKGA LLGASFFDADLTGADLS+ADLRGADFSLANVTK NL+NANLEGA  TGNTSF+
Sbjct: 124 ANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATVTGNTSFK 183

[Close]

BLAST of CsGy6G001240 vs. TAIR 10
Match: AT1G12250.1 (Pentapeptide repeat-containing protein )

HSP 1 Score: 65.1 bits (157), Expect = 9.0e-11
Identity = 47/141 (33.33%), Postives = 72/141 (51.06%), Query Frame = 0


Query: 103 GPYGAGVTR---GQDLSGKDFSGKTLIKQDFKTSILRQANFKGANLLGASFFDADLTGAD 162
           G +G G        DLS    S +   + +F ++ +R+++F G+   GA    A    A+
Sbjct: 101 GEFGIGSAAQYGSADLSKTVHSNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKAN 160

Query: 163 LSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTINGADFTDVPLREDQREYL 222
            S ADL         + +ANL+NA L  ++ T  +   G+ I GADF+D  +   Q++ L
Sbjct: 161 FSGADLSDTLMDRMVLNEANLTNAVLVRSVLT-RSDLGGAKIEGADFSDAVIDLLQKQAL 220

Query: 223 CKVADGVNPTTGNATRETLLC 241
           CK A G NP TG  TR++L C
Sbjct: 221 CKYATGTNPLTGVDTRKSLGC 240

[Close]

BLAST of CsGy6G001240 vs. TAIR 10
Match: AT1G12250.2 (Pentapeptide repeat-containing protein )

HSP 1 Score: 65.1 bits (157), Expect = 9.0e-11
Identity = 47/141 (33.33%), Postives = 72/141 (51.06%), Query Frame = 0


Query: 103 GPYGAGVTR---GQDLSGKDFSGKTLIKQDFKTSILRQANFKGANLLGASFFDADLTGAD 162
           G +G G        DLS    S +   + +F ++ +R+++F G+   GA    A    A+
Sbjct: 27  GEFGIGSAAQYGSADLSKTVHSNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKAN 86

Query: 163 LSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTINGADFTDVPLREDQREYL 222
            S ADL         + +ANL+NA L  ++ T  +   G+ I GADF+D  +   Q++ L
Sbjct: 87  FSGADLSDTLMDRMVLNEANLTNAVLVRSVLT-RSDLGGAKIEGADFSDAVIDLLQKQAL 146

Query: 223 CKVADGVNPTTGNATRETLLC 241
           CK A G NP TG  TR++L C
Sbjct: 147 CKYATGTNPLTGVDTRKSLGC 166

[Close]

BLAST of CsGy6G001240 vs. TAIR 10
Match: AT5G55000.2 (potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein )

HSP 1 Score: 59.3 bits (142), Expect = 4.9e-09
Identity = 43/111 (38.74%), Postives = 54/111 (48.65%), Query Frame = 0


Query: 111 RGQDLSGKDFSGKTLIKQDFKTSILRQANFKGANLLGASFFDADLTGADLSDADLRGADF 170
           R  D  G  F    L + +F ++ LR A   G NL  A+  DA L G     ADLR A  
Sbjct: 174 RNADAEGSIFHNAILRECEFTSANLRGALLAGTNLQSANLQDACLVGCSFCGADLRTAHL 233

Query: 171 SLANVTKANLSNANLEGALATG----NTSFRGSTINGADFTDVPLREDQRE 218
             A++T ANL  ANLEGA   G    N +F+G+ +  A    V LRE   E
Sbjct: 234 QNADLTNANLEGANLEGANLKGAKLSNANFKGANLQRAYLRHVNLREAHME 284

The following BLAST results are available for this feature:

BLAST of CsGy6G001240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22160	3.3e-74	70.09	Thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Arabidopsis thaliana OX=370...	[more]
B1WVN5	1.3e-14	43.65	Pentapeptide repeat protein Rfr32 OS=Crocosphaera subtropica (strain ATCC 51142 ...	[more]
Q8H1Q1	1.3e-09	33.33	Thylakoid lumenal protein TL20.3, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9SE95	6.9e-08	38.74	FH protein interacting protein FIP2 OS=Arabidopsis thaliana OX=3702 GN=FIP2 PE=1...	[more]
P73709	5.9e-07	37.93	Uncharacterized protein slr1819 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) ...	[more]

BLAST of CsGy6G001240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138481.2	1.13e-166	100.00	thylakoid lumenal 15 kDa protein 1, chloroplastic [Cucumis sativus] >KGN45739.2 ...	[more]
XP_008441390.1	1.46e-138	95.37	PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Cucumis melo] >KAA...	[more]
XP_022133545.1	2.81e-125	86.70	thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 [Momordica charanti...	[more]
XP_022955559.1	1.14e-124	86.70	thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X2 [Cucurbita moschata...	[more]
XP_023552471.1	1.62e-124	87.16	thylakoid lumenal 15 kDa protein 1, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy6G001240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KA71	7.79e-147	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G008700 PE=4 SV=1	[more]
A0A5A7TDC5	7.05e-139	95.37	Thylakoid lumenal 15 kDa protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3B3C6	7.05e-139	95.37	thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A6J1BVJ8	1.36e-125	86.70	thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 OS=Momordica charan...	[more]
A0A6J1GWM1	5.53e-125	86.70	thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X2 OS=Cucurbita moscha...	[more]

BLAST of CsGy6G001240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44920.2	2.3e-75	70.09	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G44920.1	1.3e-54	66.84	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G12250.1	9.0e-11	33.33	Pentapeptide repeat-containing protein	[more]
AT1G12250.2	9.0e-11	33.33	Pentapeptide repeat-containing protein	[more]
AT5G55000.2	4.9e-09	38.74	potassium channel tetramerisation domain-containing protein / pentapeptide repea...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.160.20.80		coord: 98..241 e-value: 3.7E-47 score: 161.1
None	No IPR available	SUPERFAMILY	141571	Pentapeptide repeat-like	coord: 110..212
IPR001646	Pentapeptide repeat	PFAM	PF00805	Pentapeptide	coord: 133..171 e-value: 1.5E-12 score: 46.9
IPR044213	Thylakoid lumenal 15kDa protein 1-like	PANTHER	PTHR47200	THYLAKOID LUMENAL 15 KDA PROTEIN 1, CHLOROPLASTIC	coord: 53..241

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G001240.2	CsGy6G001240.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009534	chloroplast thylakoid