CsGy6G000250 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy6G000250
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptiontRNA pseudouridine synthase
LocationGy14Chr6: 200459 .. 201585 (+)
RNA-Seq ExpressionCsGy6G000250
SyntenyCsGy6G000250
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGATATCAAAATTGAATTTATAGAAAGGTGAGGGCTTCCAAGAGTTTATGCAAATATCATCAACTGAAAGCATGATTCTGTATCCTATAAAAATAGAGAAATTTAGTCATAGGATATTTTGTTTTCACATATATAATATGTAAAATTTATGAGTTTTGAATTTTCACCCACATATTGTCACCAAAAGGGAAATCTCTGAATTGAAAACTCAACGGATGAGGTGCTGGGCGGTGGGTTCGCCTGTTCTTCCTCCAATTTCCCTTCCCCTTTCACCAATCATTCCATCTCCAAATGGCGCTTCATCTTCCTCCAGTCGTGGATTCCCGGTAACGACAATTCCTTTTCTGATCTCTCAGTTCCTCTTTTCATTTTGGTGGTTTAATTTATTTGATCGTGCCTTGAAAAGAATGCGGAGGATGATGCCTCTTATATCAAGGAGCCTTCTTTCCCATGCTTCAAATGGCGGTTGCTCATCGCTTATGACGGTACTCGATATGCAGGTCCAAGTTTCTTCTTCTTCTCTTTAATTGTCTATTGAATTGAACGATTTTGTGTTCGTATCCCAGCTTTATCTTTTTGGGTTAACAGTAATTGTAAATAGCATAAGGTTTTGAGGTTAGTTGTTGTTGCCTGTTGGATGTCTTCCGTCACCAGCATCAGTTTCACTTCAGGTTCACCCTAACGGGAGACTCGTTTAGAAGTACTTAGCCTGCTTTTATTACGAGTTAATTTGGAGAAGTTTGTGCTCACTGCTCAAAATTTGAGGCTTTCTTGTTACATGGTATAATATTAAAATTATATTTATCCATAAGTTTAGGGTTATGGGTCAATCGGTGATTTGAGATGGTATTGGTTCAAAATTTGTTGTGTTTAAACTCTTGCAATATTATTTTCTCTCCAATTAATATTGACTTTCACCTGGTTCAAATTCATAAGTGAGGGAGTGTTAGATAATACCATATAAATTTATCTTCACGGAAGCTTAAGTTGTTGGGTCAGTCAGTAATTGAAGACTTGGTGCAAAAGTTTGATAAAATAGTTTTGAATATGTTGATATTAAACTAGGCTGGCAATATCAGAGGTCACCACCCACTATCCAGTGCCTCATTGAAGAAGCCTTGA

mRNA sequence

ATGAGAGATATCAAAATTGAATTTATAGAAAGGGAAATCTCTGAATTGAAAACTCAACGGATGAGGTGCTGGGCGGTGGTCGTGGATTCCCGAATGCGGAGGATGATGCCTCTTATATCAAGGAGCCTTCTTTCCCATGCTTCAAATGGCGGTTGCTCATCGCTTATGACGGTACTCGATATGCAGGCTGGCAATATCAGAGGTCACCACCCACTATCCAGTGCCTCATTGAAGAAGCCTTGA

Coding sequence (CDS)

ATGAGAGATATCAAAATTGAATTTATAGAAAGGGAAATCTCTGAATTGAAAACTCAACGGATGAGGTGCTGGGCGGTGGTCGTGGATTCCCGAATGCGGAGGATGATGCCTCTTATATCAAGGAGCCTTCTTTCCCATGCTTCAAATGGCGGTTGCTCATCGCTTATGACGGTACTCGATATGCAGGCTGGCAATATCAGAGGTCACCACCCACTATCCAGTGCCTCATTGAAGAAGCCTTGA

Protein sequence

MRDIKIEFIEREISELKTQRMRCWAVVVDSRMRRMMPLISRSLLSHASNGGCSSLMTVLDMQAGNIRGHHPLSSASLKKP*
Homology
[Close]
BLAST of CsGy6G000250 vs. NCBI nr
Match: XP_008458280.1 (PREDICTED: tRNA pseudouridine synthase A 1 isoform X2 [Cucumis melo])

HSP 1 Score: 56.6 bits (135), Expect = 4.70e-07
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 27 VVDSRMRRMMPLISRSLLSHASNGGCSSLMTVLDMQ 62
          VVDSRMRR+ PLIS+S LS ASNGGCSSLMTVLDMQ
Sbjct: 8  VVDSRMRRI-PLISQSPLSPASNGGCSSLMTVLDMQ 42

[Close]
BLAST of CsGy6G000250 vs. NCBI nr
Match: XP_004138518.2 (uncharacterized protein LOC101205797 [Cucumis sativus] >KGN45627.2 hypothetical protein Csa_005280 [Cucumis sativus])

HSP 1 Score: 55.5 bits (132), Expect = 1.31e-06
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 0 

Query: 1  MRDIKIEFIEREISELKTQRMRCWAV 26
          MRDIKIEFIEREISELKTQRMRCWAV
Sbjct: 1  MRDIKIEFIEREISELKTQRMRCWAV 26

[Close]
BLAST of CsGy6G000250 vs. ExPASy TrEMBL
Match: A0A1S3C7H4 (tRNA pseudouridine synthase OS=Cucumis melo OX=3656 GN=LOC103497746 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.28e-07
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 27 VVDSRMRRMMPLISRSLLSHASNGGCSSLMTVLDMQ 62
          VVDSRMRR+ PLIS+S LS ASNGGCSSLMTVLDMQ
Sbjct: 8  VVDSRMRRI-PLISQSPLSPASNGGCSSLMTVLDMQ 42

The following BLAST results are available for this feature:
BLAST of CsGy6G000250 vs.
Match NameE-valueIdentityDescription
BLAST of CsGy6G000250 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008458280.14.70e-0786.11PREDICTED: tRNA pseudouridine synthase A 1 isoform X2 [Cucumis melo][more]
XP_004138518.21.31e-06100.00uncharacterized protein LOC101205797 [Cucumis sativus] >KGN45627.2 hypothetical ... [more]
BLAST of CsGy6G000250 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3C7H42.28e-0786.11tRNA pseudouridine synthase OS=Cucumis melo OX=3656 GN=LOC103497746 PE=3 SV=1[more]
BLAST of CsGy6G000250 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy6G000250.2CsGy6G000250.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001522 pseudouridine synthesis
biological_process GO:0008033 tRNA processing
molecular_function GO:0003723 RNA binding
molecular_function GO:0106029 tRNA pseudouridine synthase activity