CsGy5G030505 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy5G030505
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionSCR-like 10
LocationGy14Chr5: 33455813 .. 33456028 (-)
RNA-Seq ExpressionCsGy5G030505
SyntenyCsGy5G030505
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGTATGGCGGGGGGATGCAGGTTCTGATCAGGATCAACCAAGAACATGTCCAGTGAAATTTGCATCAACAGGGACATGTCAAGAGCCATATGGAACAGCAGGATGTTACGACGAAGTCATGGGAAAATATGGAAATTTCCCACCAAAGGACTGTCAATGCATTCCTAATGGCGATAATTCTCGCTTTTGCCAATGCAATATCTATTGTTAA

mRNA sequence

ATGTATGTATGGCGGGGGGATGCAGGTTCTGATCAGGATCAACCAAGAACATGTCCAGTGAAATTTGCATCAACAGGGACATGTCAAGAGCCATATGGAACAGCAGGATGTTACGACGAAGTCATGGGAAAATATGGAAATTTCCCACCAAAGGACTGTCAATGCATTCCTAATGGCGATAATTCTCGCTTTTGCCAATGCAATATCTATTGTTAA

Coding sequence (CDS)

ATGTATGTATGGCGGGGGGATGCAGGTTCTGATCAGGATCAACCAAGAACATGTCCAGTGAAATTTGCATCAACAGGGACATGTCAAGAGCCATATGGAACAGCAGGATGTTACGACGAAGTCATGGGAAAATATGGAAATTTCCCACCAAAGGACTGTCAATGCATTCCTAATGGCGATAATTCTCGCTTTTGCCAATGCAATATCTATTGTTAA

Protein sequence

MYVWRGDAGSDQDQPRTCPVKFASTGTCQEPYGTAGCYDEVMGKYGNFPPKDCQCIPNGDNSRFCQCNIYC*
Homology
[Close]
BLAST of CsGy5G030505 vs. NCBI nr
Match: KGN52689.1 (hypothetical protein Csa_008701 [Cucumis sativus])

HSP 1 Score: 169 bits (428), Expect = 2.99e-53
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MYVWRGDAGSDQDQPRTCPVKFASTGTCQEPYGTAGCYDEVMGKYGNFPPKDCQCIPNGD 60
          MYVWRGDAGSDQDQPRTCPVKFASTGTCQEPYGTAGCYDEVMGKYGNFPPKDCQCIPNGD
Sbjct: 1  MYVWRGDAGSDQDQPRTCPVKFASTGTCQEPYGTAGCYDEVMGKYGNFPPKDCQCIPNGD 60

Query: 61 NSRFCQCNIYC 71
          NSRFCQCNIYC
Sbjct: 61 NSRFCQCNIYC 71

[Close]
BLAST of CsGy5G030505 vs. NCBI nr
Match: KGN52690.1 (hypothetical protein Csa_007932 [Cucumis sativus])

HSP 1 Score: 102 bits (255), Expect = 1.22e-26
Identity = 41/60 (68.33%), Postives = 47/60 (78.33%), Query Frame = 0 

Query: 12 QDQPRTCPVKFASTGTCQEPYGTAGCYDEVMGKYGNFPPKDCQCIPNGDNSRFCQCNIYC 71
          +DQ +TCPVKFASTGTC  P+G + CY E M KYGN PPK C+CIP+G NSRFC CNI C
Sbjct: 29 EDQSKTCPVKFASTGTCSGPFGVSECYHEAMAKYGNIPPKGCECIPDGANSRFCLCNIIC 88

[Close]
BLAST of CsGy5G030505 vs. NCBI nr
Match: KAG6607502.1 (hypothetical protein SDJN03_00844, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 81.6 bits (200), Expect = 2.76e-18
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 0 

Query: 13 DQPRTCPVKFASTGTCQEPYGTAGCYDEVMGKYGNFPPKDCQCIPNGDNSRFCQCNIYC 71
          DQ +TCP +F STGTC +  G + CY E M ++GN PPK C+CIP G +SR C+CN  C
Sbjct: 27 DQSKTCPEEFHSTGTCGDWTGVSECYSESMARHGNIPPKGCECIPKGADSRICRCNAVC 85

[Close]
BLAST of CsGy5G030505 vs. NCBI nr
Match: KAG6607501.1 (hypothetical protein SDJN03_00843, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 80.5 bits (197), Expect = 8.54e-18
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 0 

Query: 13 DQPRTCPVKFASTGTCQEPYGTAGCYDEVMGKYGNFPPKDCQCIPNGDNSRFCQCNIYC 71
          DQ +TCP +F STGTC    G + CY E M + GN PPK C+CIP+G +SR C+CN+ C
Sbjct: 30 DQSKTCPQQFRSTGTCAGWIGISECYSESMARNGNIPPKGCKCIPDGVDSRICRCNVVC 88

[Close]
BLAST of CsGy5G030505 vs. NCBI nr
Match: KAG2672676.1 (hypothetical protein I3760_13G053700 [Carya illinoinensis] >KAG6630931.1 hypothetical protein CIPAW_13G055400 [Carya illinoinensis] >KAG6680685.1 hypothetical protein I3842_13G055000 [Carya illinoinensis] >KAG7949148.1 hypothetical protein I3843_13G046500 [Carya illinoinensis])

HSP 1 Score: 50.1 bits (118), Expect = 7.75e-06
Identity = 21/58 (36.21%), Postives = 33/58 (56.90%), Query Frame = 0 

Query: 18 CPVKFASTGTCQEPYGTAGCYDEVMGKYGNFP--PKDCQC--IPNGDNSRFCQCNIYC 71
          CP +  + G C   +GTA C+ ++  KYG  P  P +C+C  IPN   +  C+C++ C
Sbjct: 29 CPAEMKAQGQCSGMFGTADCFHQMRAKYGEAPSPPTNCKCTPIPNDLQNYKCKCDVAC 86

[Close]
BLAST of CsGy5G030505 vs. ExPASy TrEMBL
Match: A0A0A0KUV4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650540 PE=4 SV=1)

HSP 1 Score: 169 bits (428), Expect = 1.45e-53
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MYVWRGDAGSDQDQPRTCPVKFASTGTCQEPYGTAGCYDEVMGKYGNFPPKDCQCIPNGD 60
          MYVWRGDAGSDQDQPRTCPVKFASTGTCQEPYGTAGCYDEVMGKYGNFPPKDCQCIPNGD
Sbjct: 1  MYVWRGDAGSDQDQPRTCPVKFASTGTCQEPYGTAGCYDEVMGKYGNFPPKDCQCIPNGD 60

Query: 61 NSRFCQCNIYC 71
          NSRFCQCNIYC
Sbjct: 61 NSRFCQCNIYC 71

[Close]
BLAST of CsGy5G030505 vs. ExPASy TrEMBL
Match: A0A0A0KSV3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650550 PE=4 SV=1)

HSP 1 Score: 102 bits (255), Expect = 5.90e-27
Identity = 41/60 (68.33%), Postives = 47/60 (78.33%), Query Frame = 0 

Query: 12 QDQPRTCPVKFASTGTCQEPYGTAGCYDEVMGKYGNFPPKDCQCIPNGDNSRFCQCNIYC 71
          +DQ +TCPVKFASTGTC  P+G + CY E M KYGN PPK C+CIP+G NSRFC CNI C
Sbjct: 29 EDQSKTCPVKFASTGTCSGPFGVSECYHEAMAKYGNIPPKGCECIPDGANSRFCLCNIIC 88

[Close]
BLAST of CsGy5G030505 vs. TAIR 10
Match: AT4G15735.1 (SCR-like 10 )

HSP 1 Score: 42.7 bits (99), Expect = 1.4e-04
Identity = 20/62 (32.26%), Postives = 34/62 (54.84%), Query Frame = 0 

Query: 13  DQPRTCPVKFASTGTCQEPYGT--AGCYDEVMG-KYGNFPPKDCQCIPNGDNSRFCQCNI 72
           +QPR C  +    G+C +  GT    C+ + +G +  +  PK+C C P  +N R C+C++
Sbjct: 40  NQPRYCRSRQVFDGSCTD-RGTPRTTCFLDFLGARSASEMPKNCDCTPQPNNKRLCECSV 99

The following BLAST results are available for this feature:
BLAST of CsGy5G030505 vs.
Match NameE-valueIdentityDescription
BLAST of CsGy5G030505 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN52689.12.99e-53100.00hypothetical protein Csa_008701 [Cucumis sativus][more]
KGN52690.11.22e-2668.33hypothetical protein Csa_007932 [Cucumis sativus][more]
KAG6607502.12.76e-1854.24hypothetical protein SDJN03_00844, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6607501.18.54e-1854.24hypothetical protein SDJN03_00843, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG2672676.17.75e-0636.21hypothetical protein I3760_13G053700 [Carya illinoinensis] >KAG6630931.1 hypothe... [more]
BLAST of CsGy5G030505 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KUV41.45e-53100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650540 PE=4 SV=1[more]
A0A0A0KSV35.90e-2768.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650550 PE=4 SV=1[more]
BLAST of CsGy5G030505 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G15735.11.4e-0432.26SCR-like 10 [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010682Plant self-incompatibility responsePFAMPF06876SCRLcoord: 14..68
e-value: 5.1E-5
score: 23.4

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy5G030505.1CsGy5G030505.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
cellular_component GO:0005576 extracellular region