CsGy5G029947 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy5G029947
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionPrv splice variant B
LocationGy14Chr5: 33102683 .. 33102991 (-)
RNA-Seq ExpressionCsGy5G029947
SyntenyCsGy5G029947
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTTGGCTGGTTCATCATCTCATGCATCTCATTTGCCTTTTAATGTTTTCATAGGTTTCAACAGACATGAGGAAGACAACAAATACAAAAGTTCTACGAGGGATTTATATAAGATTTTGTGTATCCAGGGAATGAAGGTGTTTATGGATGATGATGGTGGTGGTGGTGGTGGTAGTAAGAAGAAGGTGTTAATGGATGAAGATAATGTGAGCGATAAGATTGTGAAAGCAATTGAAACTTACAGGTATAATTGGTTATATACATATCAAAACACCTTCTCCCGTATTACACCACCAAAAACTTAA

mRNA sequence

ATGGTTTTGGCTGGTTCATCATCTCATGCATCTCATTTGCCTTTTAATGTTTTCATAGGTTTCAACAGACATGAGGAAGACAACAAATACAAAAGTTCTACGAGGGATTTATATAAGATTTTGTGTATCCAGGGAATGAAGGTGTTTATGGATGATGATGGTGGTGGTGGTGGTGGTAGTAAGAAGAAGGTGTTAATGGATGAAGATAATGTGAGCGATAAGATTGTGAAAGCAATTGAAACTTACAGGTATAATTGGTTATATACATATCAAAACACCTTCTCCCGTATTACACCACCAAAAACTTAA

Coding sequence (CDS)

ATGGTTTTGGCTGGTTCATCATCTCATGCATCTCATTTGCCTTTTAATGTTTTCATAGGTTTCAACAGACATGAGGAAGACAACAAATACAAAAGTTCTACGAGGGATTTATATAAGATTTTGTGTATCCAGGGAATGAAGGTGTTTATGGATGATGATGGTGGTGGTGGTGGTGGTAGTAAGAAGAAGGTGTTAATGGATGAAGATAATGTGAGCGATAAGATTGTGAAAGCAATTGAAACTTACAGGTATAATTGGTTATATACATATCAAAACACCTTCTCCCGTATTACACCACCAAAAACTTAA

Protein sequence

MVLAGSSSHASHLPFNVFIGFNRHEEDNKYKSSTRDLYKILCIQGMKVFMDDDGGGGGGSKKKVLMDEDNVSDKIVKAIETYRYNWLYTYQNTFSRITPPKT*
Homology
BLAST of CsGy5G029947 vs. NCBI nr
Match: KGN52630.1 (hypothetical protein Csa_008636 [Cucumis sativus])

HSP 1 Score: 215 bits (548), Expect = 1.37e-70
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0

Query: 1   MVLAGSSSHASHLPFNVFIGFNRHEEDNKYKSSTRDLYKILCIQGMKVFMDDDGGGGGGS 60
           MVLAGSSSHASHLPFNVFIGFNRHEEDNKYKSSTRDLYKILCIQGMKVFMDDDGGGGGGS
Sbjct: 1   MVLAGSSSHASHLPFNVFIGFNRHEEDNKYKSSTRDLYKILCIQGMKVFMDDDGGGGGGS 60

Query: 61  KKKVLMDEDNVSDKIVKAIETYRYNWLYTYQNTFSRITPPKT 102
           KKKVLMDEDNVSDKIVKAIETYRYNWLYTYQNTFSRITPPKT
Sbjct: 61  KKKVLMDEDNVSDKIVKAIETYRYNWLYTYQNTFSRITPPKT 102

BLAST of CsGy5G029947 vs. NCBI nr
Match: KAA0039329.1 (TMV resistance protein N-like [Cucumis melo var. makuwa])

HSP 1 Score: 81.6 bits (200), Expect = 2.07e-15
Identity = 43/84 (51.19%), Postives = 55/84 (65.48%), Query Frame = 0

Query: 3  LAGSSSHASHLPFNVFIGFNRHE-----EDNKYKSSTRDLYKILCIQGMKVFMDDDGGGG 62
          +A SS+H SH+ ++ FI FNR +     +   Y+  T+ LY+ LC  GMKVFM DDGGG 
Sbjct: 1  MAASSAHPSHMTYDTFISFNREQTFQAKDHLMYELFTKQLYESLCRWGMKVFMADDGGGS 60

Query: 63 GGSKKKVLMD-EDNVSDKIVKAIE 80
           G  KKV  D E N++DKIVKAIE
Sbjct: 61 SGDTKKVFTDYESNLNDKIVKAIE 84

BLAST of CsGy5G029947 vs. NCBI nr
Match: AAU04758.1 (MRGH10 [Cucumis melo])

HSP 1 Score: 70.5 bits (171), Expect = 1.70e-11
Identity = 38/77 (49.35%), Postives = 48/77 (62.34%), Query Frame = 0

Query: 4  AGSSSHASHLPFNVFIGFNRHEEDNKYKSSTRDLYKILCIQGMKVFMDDDGGGGGGSKKK 63
          AGSSSH S + F+ F+ FNR EED+ Y+   + LY+ L   G+K+FMDD        KK 
Sbjct: 3  AGSSSHPSQMAFDAFLSFNRDEEDDGYRYFIKGLYETLSEWGIKLFMDD-------GKKM 62

Query: 64 VLMDEDNVSDKIVKAIE 80
             DE N+SD IVKAIE
Sbjct: 63 FTDDEVNLSDNIVKAIE 72

BLAST of CsGy5G029947 vs. NCBI nr
Match: XP_016902418.1 (PREDICTED: TMV resistance protein N-like [Cucumis melo])

HSP 1 Score: 70.5 bits (171), Expect = 1.73e-11
Identity = 38/77 (49.35%), Postives = 48/77 (62.34%), Query Frame = 0

Query: 4  AGSSSHASHLPFNVFIGFNRHEEDNKYKSSTRDLYKILCIQGMKVFMDDDGGGGGGSKKK 63
          AGSSSH S + F+ F+ FNR EED+ Y+   + LY+ L   G+K+FMDD        KK 
Sbjct: 3  AGSSSHPSQMAFDAFLSFNRDEEDDGYRYFIKGLYETLSEWGIKLFMDD-------GKKM 62

Query: 64 VLMDEDNVSDKIVKAIE 80
             DE N+SD IVKAIE
Sbjct: 63 FTDDEVNLSDNIVKAIE 72

BLAST of CsGy5G029947 vs. NCBI nr
Match: XP_038890436.1 (LOW QUALITY PROTEIN: TMV resistance protein N-like [Benincasa hispida])

HSP 1 Score: 69.7 bits (169), Expect = 3.21e-11
Identity = 42/79 (53.16%), Postives = 50/79 (63.29%), Query Frame = 0

Query: 3  LAGSSSHA-SHLPFNVFIGFNRHEEDNKYKSSTRDLYKILCIQGMKVFMDDDGGGGGGSK 62
          +AGSSS+  S + F+VFI FNR EED  Y+   ++LY+ L   GMKVFMDDD        
Sbjct: 1  MAGSSSNPKSQMVFDVFISFNRDEEDENYRRFRKELYENLRGWGMKVFMDDDHDNH---- 60

Query: 63 KKVLMDEDNVSDKIVKAIE 80
               DED VSDKIVKAIE
Sbjct: 61 -----DEDKVSDKIVKAIE 70

BLAST of CsGy5G029947 vs. ExPASy TrEMBL
Match: A0A0A0KSQ6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G647520 PE=4 SV=1)

HSP 1 Score: 215 bits (548), Expect = 6.61e-71
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0

Query: 1   MVLAGSSSHASHLPFNVFIGFNRHEEDNKYKSSTRDLYKILCIQGMKVFMDDDGGGGGGS 60
           MVLAGSSSHASHLPFNVFIGFNRHEEDNKYKSSTRDLYKILCIQGMKVFMDDDGGGGGGS
Sbjct: 1   MVLAGSSSHASHLPFNVFIGFNRHEEDNKYKSSTRDLYKILCIQGMKVFMDDDGGGGGGS 60

Query: 61  KKKVLMDEDNVSDKIVKAIETYRYNWLYTYQNTFSRITPPKT 102
           KKKVLMDEDNVSDKIVKAIETYRYNWLYTYQNTFSRITPPKT
Sbjct: 61  KKKVLMDEDNVSDKIVKAIETYRYNWLYTYQNTFSRITPPKT 102

BLAST of CsGy5G029947 vs. ExPASy TrEMBL
Match: A0A5A7TDI7 (TMV resistance protein N-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G001270 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.00e-15
Identity = 43/84 (51.19%), Postives = 55/84 (65.48%), Query Frame = 0

Query: 3  LAGSSSHASHLPFNVFIGFNRHE-----EDNKYKSSTRDLYKILCIQGMKVFMDDDGGGG 62
          +A SS+H SH+ ++ FI FNR +     +   Y+  T+ LY+ LC  GMKVFM DDGGG 
Sbjct: 1  MAASSAHPSHMTYDTFISFNREQTFQAKDHLMYELFTKQLYESLCRWGMKVFMADDGGGS 60

Query: 63 GGSKKKVLMD-EDNVSDKIVKAIE 80
           G  KKV  D E N++DKIVKAIE
Sbjct: 61 SGDTKKVFTDYESNLNDKIVKAIE 84

BLAST of CsGy5G029947 vs. ExPASy TrEMBL
Match: Q5DMW3 (MRGH10 OS=Cucumis melo OX=3656 GN=MRGH10 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 8.24e-12
Identity = 38/77 (49.35%), Postives = 48/77 (62.34%), Query Frame = 0

Query: 4  AGSSSHASHLPFNVFIGFNRHEEDNKYKSSTRDLYKILCIQGMKVFMDDDGGGGGGSKKK 63
          AGSSSH S + F+ F+ FNR EED+ Y+   + LY+ L   G+K+FMDD        KK 
Sbjct: 3  AGSSSHPSQMAFDAFLSFNRDEEDDGYRYFIKGLYETLSEWGIKLFMDD-------GKKM 62

Query: 64 VLMDEDNVSDKIVKAIE 80
             DE N+SD IVKAIE
Sbjct: 63 FTDDEVNLSDNIVKAIE 72

BLAST of CsGy5G029947 vs. ExPASy TrEMBL
Match: A0A1S4E2G9 (TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LOC103498647 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 8.36e-12
Identity = 38/77 (49.35%), Postives = 48/77 (62.34%), Query Frame = 0

Query: 4  AGSSSHASHLPFNVFIGFNRHEEDNKYKSSTRDLYKILCIQGMKVFMDDDGGGGGGSKKK 63
          AGSSSH S + F+ F+ FNR EED+ Y+   + LY+ L   G+K+FMDD        KK 
Sbjct: 3  AGSSSHPSQMAFDAFLSFNRDEEDDGYRYFIKGLYETLSEWGIKLFMDD-------GKKM 62

Query: 64 VLMDEDNVSDKIVKAIE 80
             DE N+SD IVKAIE
Sbjct: 63 FTDDEVNLSDNIVKAIE 72

BLAST of CsGy5G029947 vs. ExPASy TrEMBL
Match: A0A7L9RVU7 (Resistance gene-like protein OS=Cucumis melo OX=3656 GN=Prv PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.78e-11
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 0

Query: 4  AGSSSHASHLPFNVFIGFNRHEEDNKYKSSTRDLYKILCIQGMKVFMDDDGGG------- 63
          AGSSSH S + F+VF+ FNR EED+ Y+   + LY+ L   G+K+FMDDD          
Sbjct: 3  AGSSSHPSQMAFDVFLSFNRDEEDDGYRRFIKCLYETLSEWGIKMFMDDDKKMFMDDIKM 62

Query: 64 -GGGSKKKVLMDEDNVSDKIVKAIE 80
               KK  + DE N+SD IVKAIE
Sbjct: 63 LKDDGKKMFMDDEVNLSDDIVKAIE 87

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KGN52630.11.37e-70100.00hypothetical protein Csa_008636 [Cucumis sativus][more]
KAA0039329.12.07e-1551.19TMV resistance protein N-like [Cucumis melo var. makuwa][more]
AAU04758.11.70e-1149.35MRGH10 [Cucumis melo][more]
XP_016902418.11.73e-1149.35PREDICTED: TMV resistance protein N-like [Cucumis melo][more]
XP_038890436.13.21e-1153.16LOW QUALITY PROTEIN: TMV resistance protein N-like [Benincasa hispida][more]
Match NameE-valueIdentityDescription
A0A0A0KSQ66.61e-71100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G647520 PE=4 SV=1[more]
A0A5A7TDI71.00e-1551.19TMV resistance protein N-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... [more]
Q5DMW38.24e-1249.35MRGH10 OS=Cucumis melo OX=3656 GN=MRGH10 PE=4 SV=1[more]
A0A1S4E2G98.36e-1249.35TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LOC103498647 PE=4 SV=1[more]
A0A7L9RVU72.78e-1147.06Resistance gene-like protein OS=Cucumis melo OX=3656 GN=Prv PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR035897Toll/interleukin-1 receptor homology (TIR) domain superfamilyGENE3D3.40.50.10140coord: 14..96
e-value: 4.5E-5
score: 25.2

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy5G029947.1CsGy5G029947.1mRNA