CsGy5G029380 (gene) Cucumber (Gy14) v2.1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATTTTCCAAAACTTACACCTACAAATCCCGCCGAATAAAGTGCAAAATATTATGATAACCGTTATTGGCCTTTGTCCGAGTTGTAAACGAAGAAGCTGCCTCTCATTTTGCCGTCACGTCTCGCCGTCGGTAGATCTCTGCGTTTTGTGGTGCGTCCTCTCCTCTCTCGGTTCTTTCTCTATTCTAATTTCAGAGGATGATTGAATCTTCTACACTAGAAGTTGACATTCATTTCCGTTCATCAAGATAACATATCTCTTTTTTCTAATCTAATTAAAAACTGCTGATCGTTATAGTTCATACAAACTTGATTTTGATGCAGTTTTTGGAATTTAAATTATAAGGTTCTGATGTTCACAGCCTCGTAAATTGTATTTCTAAATAATTTAAACCACGTTTGATTAATTGGTAAACTTGATAGAAATCGTGAGATATAAGAGTGTATTCATGTGCTTTATGAGTTACATCATGAGGACAATTTTGTAATGTTATAGACTAAATCGAGTAAAAGTGAATGAAGGAATTTCTTGTGTGATACCTTATTCAAATTCTTCTTCTTTTTTAAGCCTATCAGTTATACGTATATTTAGTTGCTGGCCTTAAATTTTCCCCTTTTTTTTACTGTACTTCTGATGCCTTGCAATTTGGTTGTGAAGTTTGCTGTCTGGGTTGGTATTTTGATTAATTGGTGTAGCTTGAGCTGTTTTTGTAATATCATTTTTATAGATTTAGTTTTGATCTTGGTCTACGCGTTTCCATATAGTGTAGGTTACACAAATCTTTACCTTGAAGCATGTCTGGAGAAGAGGAAGAAAATGCTGCAGAGCTTAAAATTGGGGATGGTACCATTCTTTCTATACATCTCTAATTTTCTATCAATATTCAATTCAATGAGATTTTAAGCCACTAACATATGTTGCAATGTGTTTGCTTTGTGTATTTGAAAATTTTTAATCTATTGAGCAATTCATGTGTTTGATCTTTTAATTTGCTTAAAAGTGAGAAACTTAATTCACTATGTTGTTCCCCATGCCTTAATGTAGCCTTATTGCACATTCTTTGAACCTTCTATTTGCCAATGTGGAGATTGTTTTTATTTTTTTAACAGTGCATTTAGTTTGGACTGGGAATGTGCAGTCAATGTAAACATTTTCTTAAAGAAATTTTGTGGTTAGAGTGATAGCTTAAAGATATATTTTTTTTCTAAGAAATCTAGATTTAATTGAGAAAAGCGAAGGTGTACTAGTGCATGCAAATAAGCCCACAAAAGGAGTACTCCTCGATTGTAATGCAAAGAAGTTGCAATCTCTTTCATTAAATCACATACCTCGTGGATGGTTGTTTTGCTTGGACGAGAGAGGAGAAATATAGTAAACTGCCTTGTTTCTTTAAGGCCATTAGTTGATGCGATTACATCTTGTACCCATCTGTTCAGGATCGTAGAATCTCTTAAATATTTCAAATATTGTTAGGTAAAGAAACAGTCATTAGATAGGTAGTTGGATGTCCATGTTTATGAAAGGAAGTTTCGTTTGCATGCACCTTCCATTTGTTGTTTATGATATCGTGCTATTATTTTTCGTAATGCATGTTCTTAACATTTTTAGCGGGTACATTTACTATGTTGAAGCATCACTTAATAATGTGAAATTTGGCCAATTGCATCTAAAAAGCCCTAGTCCTTGTGACGTGATTAAGGCACCTCACTTTATACTTGTTTAAGGTTGAAATAGCAAAATGTTAGTGATCTCCACAAAATCTTAATTCTAATCTATAATCATTTTGTCAGTAAGACACTAAAACTATCGCTAGGTTTTCCAGGATAATGCATAAGGCCTGAGACTAGCCAAATCTTTGTGATTTAAATGGATAAGTAATTATTCAAAATTTAAGCATTTGCCATCAAAATCTTTCTAGGGGGTACTCTAGCAGCCTTATTTTCTTGTATTTATCTTGCTCTTTGTGCTAAGATCCATGAAGAGAAATATAAGGCATCATAATTAACACTTTATTTGTCTACTTGCAGAGTTCTTAAAAGCTAAGTGTTTAATGAATTGTGAAGTTTCTTTGATCCTGGAACACAAGTATGAGCAGCTTCAACAAAGGGCTGAGGATCCAACAAATCAAGTTTCTCAGTGAGATTTATGCTTTTTCTTTATTGATTCATAAGTTAAGTTAGAGTTTCTCTTCTTTGTTGGAATAGCTAAAGTGTATAGTTTTATTACGGTATTCATTCTCACTTGCCATACAATAACAATGGATTTTTAATTTGGTCTTCTTTTGCAGAGTGTTTGAGAAGTCACTGCAGTATGTGAAACGTTTCAGTCGCTATAAGAACCCCGATGCTGTTAGACAAGTCCGAGAGTATCCTTTCTTAAATCTTCGATTCACCCAGAAGCTTAAGCTAGTGGGTGAAAGCAAATTTAAACTTATGCCTAACATTTTCTCCTCACTTGTGAGCTCAAAATAGGAAGAAAAATCCAACAAGTGGAAATGAATATTAAATCGAAAAGAAACGTCGAACTTAGACTACACTGCTCATGTACTATCTTAAATCACCGATTCACCCAAAAGCTTAAACTAGTGGGTGAAATCAAATTTAATATTGTATCTAACATAAACTATATAATGTTTTTTATTTTATGGGATGGTGGGAAGGATGAGTTGTGCATATCTACTCTATGCCATAACTAACCCCATTTGGAACTAGTAATTTACATTTGTCATATTTCTTGCTAGACCAATAACTCTCTGATTAGCTGTTACATATATATGTATATATGTATACACATCCATACTATTTAGTATTTTGTAGGTTTCCTCCATATCCATTTGAAAAAAACTATACTACTTCGGTATTTAATTCATGGAGGGAAATACAATTTAAGTTAAAAGAACAGAAAAGTTTGCCTCATTGTTTAAAACGGCATAAATATGGTTAAATCTTAACTATCATATAGAATTCTAAGCAGATATCAACTAGCTGAGTTCGAGGTATGTGTATGAGATCACTTATTAATTAACTTATTGACTATTGTTCTATGGAAAGGTTTATCACATTGTTCTTGAAATTTGCAGTTATGTGTTCTTGGCAACCTTTGCCCTGAAACTGTGGAGGAAGCTACTTCCATAGTTCCATCTTTGAAGGTATTTTTTTTTGCCAACTTTTTATAACTATGCCTGTATTTAATTATTTATTGTTATTTTGATGTGCCATAAGTAGGTACTGACTTTTAAAATGTTTGTTTGATGTGTTTATCTTTTAACATTGAATATGCATCAAGTTTTTGAATTAGGTGAAAAATCCTTTGAGGTATTCTTGACACCAAAATAGTCGAAAACTAATGATAAAAGTATTTCTTGAGCTGATTTGAAAGTTTGAAGGTATTTTTGAAACTTTTGAAACTTCAAAAACATTTTTGATACAAAATGTAAAATTTTGAGACATTTTCTATATTTTAGCTTTTAAGTTTTAAGTTACTGCTAAAATTTTAAAGTGAAAACAAAATGTTCATATATAGATGTATCAAAGTAGACTTTGCTTATAAATACTTTTCTTGGTTTCAGACTAAGGGAAGAGTGCACGAGGACGAAGCAATAGAGAAGATGTTGAATGATCTTTCATTAATAAAAAAGTTCGAGTAG ATTTTCCAAAACTTACACCTACAAATCCCGCCGAATAAAGTGCAAAATATTATGATAACCGTTATTGGCCTTTGTCCGAGTTGTAAACGAAGAAGCTGCCTCTCATTTTGCCGTCACGTCTCGCCGTCGGTAGATCTCTGCGTTTTGTGGTTACACAAATCTTTACCTTGAAGCATGTCTGGAGAAGAGGAAGAAAATGCTGCAGAGCTTAAAATTGGGGATGAGTTCTTAAAAGCTAAGTGTTTAATGAATTGTGAAGTTTCTTTGATCCTGGAACACAAGTATGAGCAGCTTCAACAAAGGGCTGAGGATCCAACAAATCAAGTTTCTCAAGTGTTTGAGAAGTCACTGCAGTATGTGAAACGTTTCAGTCGCTATAAGAACCCCGATGCTGTTAGACAAGTCCGAGAAATTCTAAGCAGATATCAACTAGCTGAGTTCGAGTTATGTGTTCTTGGCAACCTTTGCCCTGAAACTGTGGAGGAAGCTACTTCCATAGTTCCATCTTTGAAGACTAAGGGAAGAGTGCACGAGGACGAAGCAATAGAGAAGATGTTGAATGATCTTTCATTAATAAAAAAGTTCGAGTAG ATGTCTGGAGAAGAGGAAGAAAATGCTGCAGAGCTTAAAATTGGGGATGAGTTCTTAAAAGCTAAGTGTTTAATGAATTGTGAAGTTTCTTTGATCCTGGAACACAAGTATGAGCAGCTTCAACAAAGGGCTGAGGATCCAACAAATCAAGTTTCTCAAGTGTTTGAGAAGTCACTGCAGTATGTGAAACGTTTCAGTCGCTATAAGAACCCCGATGCTGTTAGACAAGTCCGAGAAATTCTAAGCAGATATCAACTAGCTGAGTTCGAGTTATGTGTTCTTGGCAACCTTTGCCCTGAAACTGTGGAGGAAGCTACTTCCATAGTTCCATCTTTGAAGACTAAGGGAAGAGTGCACGAGGACGAAGCAATAGAGAAGATGTTGAATGATCTTTCATTAATAAAAAAGTTCGAGTAG MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQRAEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEATSIVPSLKTKGRVHEDEAIEKMLNDLSLIKKFE* Homology
BLAST of CsGy5G029380 vs. ExPASy Swiss-Prot
Match: O48890 (DNA-directed RNA polymerase II subunit 4 OS=Arabidopsis thaliana OX=3702 GN=NRPB4 PE=1 SV=1) HSP 1 Score: 251.5 bits (641), Expect = 5.5e-66 Identity = 125/138 (90.58%), Postives = 133/138 (96.38%), Query Frame = 0
BLAST of CsGy5G029380 vs. ExPASy Swiss-Prot
Match: O15514 (DNA-directed RNA polymerase II subunit RPB4 OS=Homo sapiens OX=9606 GN=POLR2D PE=1 SV=1) HSP 1 Score: 105.1 bits (261), Expect = 6.3e-22 Identity = 58/137 (42.34%), Postives = 94/137 (68.61%), Query Frame = 0
BLAST of CsGy5G029380 vs. ExPASy Swiss-Prot
Match: Q9D7M8 (DNA-directed RNA polymerase II subunit RPB4 OS=Mus musculus OX=10090 GN=Polr2d PE=1 SV=2) HSP 1 Score: 105.1 bits (261), Expect = 6.3e-22 Identity = 58/137 (42.34%), Postives = 94/137 (68.61%), Query Frame = 0
BLAST of CsGy5G029380 vs. ExPASy Swiss-Prot
Match: Q54S04 (DNA-directed RNA polymerase II subunit rpb4 OS=Dictyostelium discoideum OX=44689 GN=polr2d PE=3 SV=1) HSP 1 Score: 96.7 bits (239), Expect = 2.2e-19 Identity = 54/147 (36.73%), Postives = 85/147 (57.82%), Query Frame = 0
BLAST of CsGy5G029380 vs. ExPASy Swiss-Prot
Match: Q9VEA5 (DNA-directed RNA polymerase II subunit Rpb4 OS=Drosophila melanogaster OX=7227 GN=Rpb4 PE=2 SV=5) HSP 1 Score: 89.0 bits (219), Expect = 4.7e-17 Identity = 48/126 (38.10%), Postives = 80/126 (63.49%), Query Frame = 0
BLAST of CsGy5G029380 vs. NCBI nr
Match: XP_004141497.1 (DNA-directed RNA polymerase II subunit 4 [Cucumis sativus] >XP_031742047.1 DNA-directed RNA polymerase II subunit 4 [Cucumis sativus] >KAE8648963.1 hypothetical protein Csa_008563 [Cucumis sativus]) HSP 1 Score: 268 bits (684), Expect = 3.54e-90 Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0
BLAST of CsGy5G029380 vs. NCBI nr
Match: XP_008459458.1 (PREDICTED: DNA-directed RNA polymerase II subunit 4-like [Cucumis melo] >XP_008459459.1 PREDICTED: DNA-directed RNA polymerase II subunit 4-like [Cucumis melo] >KAA0039380.1 DNA-directed RNA polymerase II subunit 4-like [Cucumis melo var. makuwa]) HSP 1 Score: 266 bits (680), Expect = 1.44e-89 Identity = 136/138 (98.55%), Postives = 138/138 (100.00%), Query Frame = 0
BLAST of CsGy5G029380 vs. NCBI nr
Match: XP_038890773.1 (DNA-directed RNA polymerase II subunit 4-like [Benincasa hispida] >XP_038890774.1 DNA-directed RNA polymerase II subunit 4-like [Benincasa hispida]) HSP 1 Score: 264 bits (674), Expect = 1.19e-88 Identity = 135/138 (97.83%), Postives = 137/138 (99.28%), Query Frame = 0
BLAST of CsGy5G029380 vs. NCBI nr
Match: XP_022939401.1 (DNA-directed RNA polymerase II subunit 4-like [Cucurbita moschata] >XP_022939402.1 DNA-directed RNA polymerase II subunit 4-like [Cucurbita moschata] >XP_022993195.1 DNA-directed RNA polymerase II subunit 4-like [Cucurbita maxima] >XP_022993196.1 DNA-directed RNA polymerase II subunit 4-like [Cucurbita maxima] >XP_023549816.1 DNA-directed RNA polymerase II subunit 4-like [Cucurbita pepo subsp. pepo] >XP_023549818.1 DNA-directed RNA polymerase II subunit 4-like [Cucurbita pepo subsp. pepo] >KAG6578503.1 DNA-directed RNA polymerase II subunit 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016067.1 DNA-directed RNA polymerase II subunit 4 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 258 bits (659), Expect = 2.30e-86 Identity = 132/138 (95.65%), Postives = 135/138 (97.83%), Query Frame = 0
BLAST of CsGy5G029380 vs. NCBI nr
Match: XP_038884885.1 (DNA-directed RNA polymerase II subunit 4 [Benincasa hispida]) HSP 1 Score: 257 bits (657), Expect = 4.64e-86 Identity = 131/138 (94.93%), Postives = 136/138 (98.55%), Query Frame = 0
BLAST of CsGy5G029380 vs. ExPASy TrEMBL
Match: A0A1S3CA78 (DNA-directed RNA polymerase II subunit 4-like OS=Cucumis melo OX=3656 GN=LOC103498588 PE=4 SV=1) HSP 1 Score: 266 bits (680), Expect = 6.98e-90 Identity = 136/138 (98.55%), Postives = 138/138 (100.00%), Query Frame = 0
BLAST of CsGy5G029380 vs. ExPASy TrEMBL
Match: A0A5A7T811 (DNA-directed RNA polymerase II subunit 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G001820 PE=4 SV=1) HSP 1 Score: 266 bits (680), Expect = 6.98e-90 Identity = 136/138 (98.55%), Postives = 138/138 (100.00%), Query Frame = 0
BLAST of CsGy5G029380 vs. ExPASy TrEMBL
Match: A0A6J1JVN3 (DNA-directed RNA polymerase II subunit 4-like OS=Cucurbita maxima OX=3661 GN=LOC111489290 PE=4 SV=1) HSP 1 Score: 258 bits (659), Expect = 1.11e-86 Identity = 132/138 (95.65%), Postives = 135/138 (97.83%), Query Frame = 0
BLAST of CsGy5G029380 vs. ExPASy TrEMBL
Match: A0A6J1FFS7 (DNA-directed RNA polymerase II subunit 4-like OS=Cucurbita moschata OX=3662 GN=LOC111445330 PE=4 SV=1) HSP 1 Score: 258 bits (659), Expect = 1.11e-86 Identity = 132/138 (95.65%), Postives = 135/138 (97.83%), Query Frame = 0
BLAST of CsGy5G029380 vs. ExPASy TrEMBL
Match: A0A5D3C019 (DNA-directed RNA polymerase II subunit 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002310 PE=4 SV=1) HSP 1 Score: 257 bits (656), Expect = 3.19e-86 Identity = 130/138 (94.20%), Postives = 136/138 (98.55%), Query Frame = 0
BLAST of CsGy5G029380 vs. TAIR 10
Match: AT5G09920.1 (RNA polymerase II, Rpb4, core protein ) HSP 1 Score: 251.5 bits (641), Expect = 3.9e-67 Identity = 125/138 (90.58%), Postives = 133/138 (96.38%), Query Frame = 0
BLAST of CsGy5G029380 vs. TAIR 10
Match: AT4G15950.1 (RNA polymerase II, Rpb4, core protein ) HSP 1 Score: 82.8 bits (203), Expect = 2.4e-16 Identity = 44/118 (37.29%), Postives = 74/118 (62.71%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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