CsGy5G028900 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy5G028900
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr5: 32340483 .. 32341439 (+)
RNA-Seq Expression	CsGy5G028900
Synteny	CsGy5G028900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATAAATTCATATTAGGTTTGCATAATACGAAACCTAAATTAAAGAGGTGTAAATTAATTAACATAAGCTAATTTGAGATTTTAATCGAACAATTATAAATTTCACACTCAAAAGTTCCTAATATAATTTTAACTTATTGTTTTAAATAATTAAATAGCATTTTAAATTTAAAAATGCTCATAATTAAACTTATTTGAGCGAAAAAGAAAAAGAGAACCCAAAGCAAAAGAGAACCCAAAGCAAAGAAAAAGCAAAAGCAAACAGCAATAATGGAGAGACCATTGCTTCTATGTTCACTATCTGTATAAGTCTCCCCCTTCGCATACGAACAGACCAAGAAACAGAGAGCCAAAAATGGGAGGCCGTTCTTCGTTTTGTGGGTTAACAATGGTGGTGGTGGTGGTGATGTCGATAACCATCCTGAGTTCCAGCTACAGCTGCAGAGGTTCGATTCTGATGAAGGCCAACGCCACGTTGGGTAGCGTGATGACGACCGAGTTGATCATCAAGCACGATATAACTCGGTATCTCATATTCAAGGGTGCCACCGCAGTGACAGGTGCGACTGCGGACCCAAACATCGTGACATGTGGCAATGGCGCCGGAAACACGTTTTCCGGCTGCGGTGGTAATGCTAATAATACACAACAGTGCAATGCATACCAAGGACCTAACGCTTGCTTATAATCCCTTCAGTTCCATATTAATATGATCACTATGACTCTGCGCAGTTTCTATGTCATCGTGTAATCCCCTGTTTTTTATGATCCTCTGTTCTTCTTTCTATTTCTCTTTGAAGTGGAGTTTGTTTGTTTGATGCTTTCATTAACAATGTATTTGGTGCTTTGTTGTTTGTTTTTGTGAAATAAGAACTAAATCAAATCACTTTTCTTCTTCTCTCTCTTGTTCAATCCATTGATCCTCTAAGTATTTTCGTAATAAAGATTAAATTGTTA

mRNA sequence

TATAAATTCATATTAGGTTTGCATAATACGAAACCTAAATTAAAGAGGTGTAAATTAATTAACATAAGCTAATTTGAGATTTTAATCGAACAATTATAAATTTCACACTCAAAAGTTCCTAATATAATTTTAACTTATTGTTTTAAATAATTAAATAGCATTTTAAATTTAAAAATGCTCATAATTAAACTTATTTGAGCGAAAAAGAAAAAGAGAACCCAAAGCAAAAGAGAACCCAAAGCAAAGAAAAAGCAAAAGCAAACAGCAATAATGGAGAGACCATTGCTTCTATGTTCACTATCTGTATAAGTCTCCCCCTTCGCATACGAACAGACCAAGAAACAGAGAGCCAAAAATGGGAGGCCGTTCTTCGTTTTGTGGGTTAACAATGGTGGTGGTGGTGGTGATGTCGATAACCATCCTGAGTTCCAGCTACAGCTGCAGAGGTTCGATTCTGATGAAGGCCAACGCCACGTTGGGTAGCGTGATGACGACCGAGTTGATCATCAAGCACGATATAACTCGGTATCTCATATTCAAGGGTGCCACCGCAGTGACAGGTGCGACTGCGGACCCAAACATCGTGACATGTGGCAATGGCGCCGGAAACACGTTTTCCGGCTGCGGTGGTAATGCTAATAATACACAACAGTGCAATGCATACCAAGGACCTAACGCTTGCTTATAATCCCTTCAGTTCCATATTAATATGATCACTATGACTCTGCGCAGTTTCTATGTCATCGTGTAATCCCCTGTTTTTTATGATCCTCTGTTCTTCTTTCTATTTCTCTTTGAAGTGGAGTTTGTTTGTTTGATGCTTTCATTAACAATGTATTTGGTGCTTTGTTGTTTGTTTTTGTGAAATAAGAACTAAATCAAATCACTTTTCTTCTTCTCTCTCTTGTTCAATCCATTGATCCTCTAAGTATTTTCGTAATAAAGATTAAATTGTTA

Coding sequence (CDS)

ATGGGAGGCCGTTCTTCGTTTTGTGGGTTAACAATGGTGGTGGTGGTGGTGATGTCGATAACCATCCTGAGTTCCAGCTACAGCTGCAGAGGTTCGATTCTGATGAAGGCCAACGCCACGTTGGGTAGCGTGATGACGACCGAGTTGATCATCAAGCACGATATAACTCGGTATCTCATATTCAAGGGTGCCACCGCAGTGACAGGTGCGACTGCGGACCCAAACATCGTGACATGTGGCAATGGCGCCGGAAACACGTTTTCCGGCTGCGGTGGTAATGCTAATAATACACAACAGTGCAATGCATACCAAGGACCTAACGCTTGCTTATAA

Protein sequence

MGGRSSFCGLTMVVVVVMSITILSSSYSCRGSILMKANATLGSVMTTELIIKHDITRYLIFKGATAVTGATADPNIVTCGNGAGNTFSGCGGNANNTQQCNAYQGPNACL*

Homology

[Close]

BLAST of CsGy5G028900 vs. NCBI nr
Match: KGN52519.1 (hypothetical protein Csa_008872 [Cucumis sativus])

HSP 1 Score: 217 bits (553), Expect = 4.25e-71
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MGGRSSFCGLTMVVVVVMSITILSSSYSCRGSILMKANATLGSVMTTELIIKHDITRYLI 60
           MGGRSSFCGLTMVVVVVMSITILSSSYSCRGSILMKANATLGSVMTTELIIKHDITRYLI
Sbjct: 1   MGGRSSFCGLTMVVVVVMSITILSSSYSCRGSILMKANATLGSVMTTELIIKHDITRYLI 60

Query: 61  FKGATAVTGATADPNIVTCGNGAGNTFSGCGGNANNTQQCNAYQGPNACL 110
           FKGATAVTGATADPNIVTCGNGAGNTFSGCGGNANNTQQCNAYQGPNACL
Sbjct: 61  FKGATAVTGATADPNIVTCGNGAGNTFSGCGGNANNTQQCNAYQGPNACL 110

[Close]

BLAST of CsGy5G028900 vs. NCBI nr
Match: KAA0039429.1 (hypothetical protein E6C27_scaffold64G002360 [Cucumis melo var. makuwa] >TYK00618.1 hypothetical protein E5676_scaffold169G002380 [Cucumis melo var. makuwa])

HSP 1 Score: 156 bits (394), Expect = 7.25e-47
Identity = 80/109 (73.39%), Postives = 86/109 (78.90%), Query Frame = 0


Query: 1   MGGRSSFCGLTMVVVVVMSITILSSSYSCRGSILMKANATLGSVMTTELIIKHDITRYLI 60
           MGGRSSFCGLTMVVVVVMSITILSSSYSCRGS+LMKANAT G V TTE+II HDITR+L+
Sbjct: 1   MGGRSSFCGLTMVVVVVMSITILSSSYSCRGSVLMKANATYGGVSTTEMIIYHDITRFLM 60

Query: 61  FKGATAVTGATADPNIVTCGNGAGNTFSGCGGNANNTQQCNAYQGPNAC 109
             G+  VTG T +PNIV C NG GN F  CGGNANN QQCN Y     C
Sbjct: 61  PPGSKPVTGNTGEPNIVPCNNGPGNQFGQCGGNANNQQQCNRYDTTKPC 109

[Close]

BLAST of CsGy5G028900 vs. NCBI nr
Match: KAA0039430.1 (hypothetical protein E6C27_scaffold64G002370 [Cucumis melo var. makuwa] >TYK00619.1 hypothetical protein E5676_scaffold169G002390 [Cucumis melo var. makuwa])

HSP 1 Score: 135 bits (341), Expect = 8.32e-39
Identity = 70/109 (64.22%), Postives = 84/109 (77.06%), Query Frame = 0


Query: 1   MGGRSSFCGLTMVVVVVMSITILSSSYSCRGSILMKANATLGSVMTTELIIKHDITRYLI 60
           MG RSSF GLTMVVV+ M ITI  SS+SCRGS+L+KANAT   VMT EL+I  DI RYL+
Sbjct: 1   MGSRSSFSGLTMVVVM-MLITIFCSSHSCRGSVLIKANATYDVVMTEELLIYPDINRYLM 60

Query: 61  FKGATAVTGATADPNIVTCGNGAGNTFSGCGGNANNTQQCNAYQGPNAC 109
           F G  A TG T D N+V CGNGAGN+F+GC G+ +N ++CNAY+GP AC
Sbjct: 61  FNGVDAKTGKTNDKNVVACGNGAGNSFAGCSGSTSNKKKCNAYKGPKAC 108

[Close]

BLAST of CsGy5G028900 vs. NCBI nr
Match: KGN52518.1 (hypothetical protein Csa_007870 [Cucumis sativus])

HSP 1 Score: 128 bits (322), Expect = 7.78e-36
Identity = 67/114 (58.77%), Postives = 84/114 (73.68%), Query Frame = 0


Query: 1   MGGRSS----FCGLTMVVVVVMSITILSSSYSCRGSILMKANATLGSVMTTELIIKHDIT 60
           MG RSS    F GLTMVVVV+M ITIL SS++CR S+L+KANAT G VMT EL+I  D+T
Sbjct: 1   MGSRSSSSSSFSGLTMVVVVMMLITILYSSHTCRASVLIKANATYGGVMTAELLIYPDVT 60

Query: 61  RYLIFKGATAVTGATADPNIVTCGNGAGNTFSGCGGNANNTQQCNAYQGPNACL 110
           RYL++  A + TG T D  +V C NG GN+FSGCGG+++N +QCNAY  P  C+
Sbjct: 61  RYLMYDHADSKTGKTKDKEVVVCDNGKGNSFSGCGGSSSNKKQCNAYGDPKDCI 114

[Close]

BLAST of CsGy5G028900 vs. NCBI nr
Match: KAG6578548.1 (hypothetical protein SDJN03_22996, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 82.4 bits (202), Expect = 1.03e-17
Identity = 48/109 (44.04%), Postives = 63/109 (57.80%), Query Frame = 0


Query: 1   MGGRSSFCGLTMVVVVVMSITILSSSYSCRGSILMKANATLGSVMTTELIIKHDITRYLI 60
           MGGR SF G+   V  +M   IL SS S R S L +ANAT G V   EL+++ +I R+L 
Sbjct: 1   MGGRCSFWGVA--VAALMVTIILCSSNSSRASSLGRANATYGEV-EVELLVRREIARFLN 60

Query: 61  FKGATAVTGATADPNIVTCGNGAGNTFSGCGGNANNTQQCNAYQGPNAC 109
           FK     T  T +P + +CGNG GN    C G+  N + CN+Y G +AC
Sbjct: 61  FKNMKVYTDKTQNPFVKSCGNGPGNPMGDCSGSPTNKKHCNSYAGASAC 106

[Close]

BLAST of CsGy5G028900 vs. ExPASy TrEMBL
Match: A0A0A0KUG7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640530 PE=4 SV=1)

HSP 1 Score: 217 bits (553), Expect = 2.06e-71
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MGGRSSFCGLTMVVVVVMSITILSSSYSCRGSILMKANATLGSVMTTELIIKHDITRYLI 60
           MGGRSSFCGLTMVVVVVMSITILSSSYSCRGSILMKANATLGSVMTTELIIKHDITRYLI
Sbjct: 1   MGGRSSFCGLTMVVVVVMSITILSSSYSCRGSILMKANATLGSVMTTELIIKHDITRYLI 60

Query: 61  FKGATAVTGATADPNIVTCGNGAGNTFSGCGGNANNTQQCNAYQGPNACL 110
           FKGATAVTGATADPNIVTCGNGAGNTFSGCGGNANNTQQCNAYQGPNACL
Sbjct: 61  FKGATAVTGATADPNIVTCGNGAGNTFSGCGGNANNTQQCNAYQGPNACL 110

[Close]

BLAST of CsGy5G028900 vs. ExPASy TrEMBL
Match: A0A5D3BNE4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002380 PE=4 SV=1)

HSP 1 Score: 156 bits (394), Expect = 3.51e-47
Identity = 80/109 (73.39%), Postives = 86/109 (78.90%), Query Frame = 0


Query: 1   MGGRSSFCGLTMVVVVVMSITILSSSYSCRGSILMKANATLGSVMTTELIIKHDITRYLI 60
           MGGRSSFCGLTMVVVVVMSITILSSSYSCRGS+LMKANAT G V TTE+II HDITR+L+
Sbjct: 1   MGGRSSFCGLTMVVVVVMSITILSSSYSCRGSVLMKANATYGGVSTTEMIIYHDITRFLM 60

Query: 61  FKGATAVTGATADPNIVTCGNGAGNTFSGCGGNANNTQQCNAYQGPNAC 109
             G+  VTG T +PNIV C NG GN F  CGGNANN QQCN Y     C
Sbjct: 61  PPGSKPVTGNTGEPNIVPCNNGPGNQFGQCGGNANNQQQCNRYDTTKPC 109

[Close]

BLAST of CsGy5G028900 vs. ExPASy TrEMBL
Match: A0A5D3BR80 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002390 PE=4 SV=1)

HSP 1 Score: 135 bits (341), Expect = 4.03e-39
Identity = 70/109 (64.22%), Postives = 84/109 (77.06%), Query Frame = 0


Query: 1   MGGRSSFCGLTMVVVVVMSITILSSSYSCRGSILMKANATLGSVMTTELIIKHDITRYLI 60
           MG RSSF GLTMVVV+ M ITI  SS+SCRGS+L+KANAT   VMT EL+I  DI RYL+
Sbjct: 1   MGSRSSFSGLTMVVVM-MLITIFCSSHSCRGSVLIKANATYDVVMTEELLIYPDINRYLM 60

Query: 61  FKGATAVTGATADPNIVTCGNGAGNTFSGCGGNANNTQQCNAYQGPNAC 109
           F G  A TG T D N+V CGNGAGN+F+GC G+ +N ++CNAY+GP AC
Sbjct: 61  FNGVDAKTGKTNDKNVVACGNGAGNSFAGCSGSTSNKKKCNAYKGPKAC 108

[Close]

BLAST of CsGy5G028900 vs. ExPASy TrEMBL
Match: A0A0A0KVT8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640510 PE=4 SV=1)

HSP 1 Score: 129 bits (324), Expect = 1.56e-36
Identity = 69/109 (63.30%), Postives = 85/109 (77.98%), Query Frame = 0


Query: 1   MGGRSSFCGLTMVVVVVMSITILSSSYSCRGSILMKANATLGSVMTTELIIKHDITRYLI 60
           MG RSSF GLTMVVVV M ITIL SS+SCRGS+L+KANAT   VMT EL+I  DI R+L+
Sbjct: 1   MGSRSSFSGLTMVVVV-MLITILFSSHSCRGSVLIKANATYDVVMTEELMIYGDINRHLM 60

Query: 61  FKGATAVTGATADPNIVTCGNGAGNTFSGCGGNANNTQQCNAYQGPNAC 109
             G+ A TG T + N+V CGNGAGNT++ CGG+ +N  +C+AY+GPNAC
Sbjct: 61  PSGSKAKTGKTHERNVVACGNGAGNTYAVCGGSISNENKCDAYKGPNAC 108

[Close]

BLAST of CsGy5G028900 vs. ExPASy TrEMBL
Match: A0A0A0KSJ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640520 PE=4 SV=1)

HSP 1 Score: 128 bits (322), Expect = 3.76e-36
Identity = 67/114 (58.77%), Postives = 84/114 (73.68%), Query Frame = 0


Query: 1   MGGRSS----FCGLTMVVVVVMSITILSSSYSCRGSILMKANATLGSVMTTELIIKHDIT 60
           MG RSS    F GLTMVVVV+M ITIL SS++CR S+L+KANAT G VMT EL+I  D+T
Sbjct: 1   MGSRSSSSSSFSGLTMVVVVMMLITILYSSHTCRASVLIKANATYGGVMTAELLIYPDVT 60

Query: 61  RYLIFKGATAVTGATADPNIVTCGNGAGNTFSGCGGNANNTQQCNAYQGPNACL 110
           RYL++  A + TG T D  +V C NG GN+FSGCGG+++N +QCNAY  P  C+
Sbjct: 61  RYLMYDHADSKTGKTKDKEVVVCDNGKGNSFSGCGGSSSNKKQCNAYGDPKDCI 114

The following BLAST results are available for this feature:

BLAST of CsGy5G028900 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy5G028900 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52519.1	4.25e-71	100.00	hypothetical protein Csa_008872 [Cucumis sativus]	[more]
KAA0039429.1	7.25e-47	73.39	hypothetical protein E6C27_scaffold64G002360 [Cucumis melo var. makuwa] >TYK0061...	[more]
KAA0039430.1	8.32e-39	64.22	hypothetical protein E6C27_scaffold64G002370 [Cucumis melo var. makuwa] >TYK0061...	[more]
KGN52518.1	7.78e-36	58.77	hypothetical protein Csa_007870 [Cucumis sativus]	[more]
KAG6578548.1	1.03e-17	44.04	hypothetical protein SDJN03_22996, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CsGy5G028900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUG7	2.06e-71	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640530 PE=4 SV=1	[more]
A0A5D3BNE4	3.51e-47	73.39	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BR80	4.03e-39	64.22	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KVT8	1.56e-36	63.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640510 PE=4 SV=1	[more]
A0A0A0KSJ4	3.76e-36	58.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640520 PE=4 SV=1	[more]

BLAST of CsGy5G028900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..29 score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G028900.2	CsGy5G028900.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane