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CsGy5G028310 (gene) Cucumber (Gy14) v2.1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAGGAAGAAGAAAGGGAGGAAAAATGAAATCCCCGGTTTTGTGTAGAGCGGCGGCCAAGGTTTAGCATTTCATTGCCCTAAATCGCTCCCTTCTTCCCTTTCTTTCCATTTACCCATGGCTTCCTTTGCCGCCAGGTCCATTTTTCGATCCTCCTCCGCCAAGGCTGCCACTCTTCTCAGCGCCGGAGCCAGAGCTGCTCCGGCTTCTTCACCATTTCGCATTGCTTCCAAACGACCTTTCTCTCACTGCTCTTTTAGGTAATTCCCTCCCAACCCTTCGACTTCGACGATATTTTTTCAATGTAATTTGATTCTGGAAACTCAGCGTGTGAGTTCAGTTAAGATGCGTGGAAAAGTATGCTGAGTGTTCTCATAGGTATTGTTTTTCACTTTCTCTTTGAAGGCTTCCGATTGAACTGAGCTTCTGCGTCGAGTCCATGCTTCCCTTCCATTCTGCAACTTCTTCGGCATTAATGACTTCGATGCTTTCTGTTTCTCCCCATAGCTTTGGTTGGCTTTCAGAAGGTATTTTCAGTCCTTATTCTTATAGAGTGAATTTTACTTTTTCCTATCTTCTTTTTATCCTGCCACTACGAATTCTGATTTCTTTTGTTCAACATTGGATAGATGCATTCTTGGTCCTACAATCGAATTAGTAGTTTCTACAGTGAATTTTACCTTCTTTTTTTTTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTATTCAATGTTCTTGTTCTGCTGACACTATGAAGTTTCTGATTTCTTTCGTTCAAGAATTTGGATAGCTCCATTCTTAATCTTACTACCGTGAGTTTTAACTTCTTCAATGTTCTTGTTAGCTGGCACTATGAAACTTTCTAATTTCTTTTGTTCATGATTGAATTTGAACTTTTTCAATGTTCTTGTTACTTACCGCGCTTCTATAATATAAATGCTCTTTTTGCTTGATTGAACAAGCATCTTATCCGTCCTTTTTTTTTTTTCGTTTTTTTCGTATCAATGGATTGCAATTTTGAGTTCATCTTCCTAAGATAAATATTAAATGCTGCATTCTGTACTAGGGTCTAACTTTTAAGCTAAAGAAGTAACGAAACCCTCCCCTCCAACTCTAACTTGTAATTTAGTTCTTTATAAGTGATGCTTGTATGTTCAAATCACGACTATTTCATCCACATAATTGATATAAACGCGAGGATACTAATTGTGATGTTTAATCAGTGTTCAATGATGATGTGTGATGACGAATGGTCAAGGGGCAGGAAGTTTTATGTGCAGAGTTCTACATTGTGACAGTGGCACTGCTAAATTTTGTGAACTGATCTGCAGGAATTTGGATTCCCAAGTCTTGACTTTCATTCTAGTTTGCATGTCTTAGATTCTGAATTTGTGTCACTATGGATTACTAGTAGAGTGTATAGGAAGAGATCTACAATCGACAAACATATGAGTTTTATCTGAATAGAAAGGTTTCAAGAAACTGAATTCACAAAGTCTTATTATGTTGAATTCCTTATAGGATTGTCTTGCAATAAAATGAAGGATTCTTTCTCCAGTTGTATGGTTGCTCTATCATTACTTAAGCTATGAACATACTTCATAGTTCTGATGGATGCTTGTGTTTTACAACTCCGAAATCTGTTAGATTGCTGAATGTATGAACTCAACAAGATTTATTAAATACAAAGATGTTTGGTGAACTCTAATCTTATTTTCTGTCTATGAACAGATCTGTGTTACACATCGTTAACGCTATTTAGTATCTATTTGGCAGTGTCTGGCTTGCAAACTTCATGATATATGATGATGATTGGATAAGGTTTTGACCACCTGGGCAACAACATATTCTATTCAACCTGACTTGGCGATCTTATATATTGAATTCTGTTTCCTCAGCAAAGCATATGGTTGAGATTTCCCATAGAAACATGAGCAACAGTTTTGCTAGGATTGTCCTGTGTTTTAGTGACTTCAAAAATTGTTCTCTCGTGGTTAATTTATGGTTTTAATGATGTTAAAAAAGAAAAGGAAAAGAGTTGAAGTGGAATGTGAATGAAAAAGAAGATATTAAGGTCGTGTTTATTCCTGGTGAAACATAATCAATCAAAAGTATTCTAAAAGATGCGTCTTATTTCGTTAGATTTGTTTTGTTACTTATGTTTTGTAATGGTAATGAATTGAAGGAACATAGCTTGCAAATTTGTTATAAAAATGTGTGCAATCTGATTGAAGAAGATAGGGGTGTTTGAAAATGAT AAGGAAGAAGAAAGGGAGGAAAAATGAAATCCCCGGTTTTGTGTAGAGCGGCGGCCAAGGTTTAGCATTTCATTGCCCTAAATCGCTCCCTTCTTCCCTTTCTTTCCATTTACCCATGGCTTCCTTTGCCGCCAGGTCCATTTTTCGATCCTCCTCCGCCAAGGCTGCCACTCTTCTCAGCGCCGGAGCCAGAGCTGCTCCGGCTTCTTCACCATTTCGCATTGCTTCCAAACGACCTTTCTCTCACTGCTCTTTTAGGCTTCCGATTGAACTGAGCTTCTGCGTCGAGTCCATGCTTCCCTTCCATTCTGCAACTTCTTCGGCATTAATGACTTCGATGCTTTCTGTTTCTCCCCATAGCTTTGGTTGGCTTTCAGAAGTATCTATTTGGCAGTGTCTGGCTTGCAAACTTCATGATATATGATGATGATTGGATAAGGTTTTGACCACCTGGGCAACAACATATTCTATTCAACCTGACTTGGCGATCTTATATATTGAATTCTGTTTCCTCAGCAAAGCATATGGTTGAGATTTCCCATAGAAACATGAGCAACAGTTTTGCTAGGATTGTCCTGTGTTTTAGTGACTTCAAAAATTGTTCTCTCGTGGTTAATTTATGGTTTTAATGATGTTAAAAAAGAAAAGGAAAAGAGTTGAAGTGGAATGTGAATGAAAAAGAAGATATTAAGGTCGTGTTTATTCCTGGTGAAACATAATCAATCAAAAGTATTCTAAAAGATGCGTCTTATTTCGTTAGATTTGTTTTGTTACTTATGTTTTGTAATGGTAATGAATTGAAGGAACATAGCTTGCAAATTTGTTATAAAAATGTGTGCAATCTGATTGAAGAAGATAGGGGTGTTTGAAAATGAT ATGGCTTCCTTTGCCGCCAGGTCCATTTTTCGATCCTCCTCCGCCAAGGCTGCCACTCTTCTCAGCGCCGGAGCCAGAGCTGCTCCGGCTTCTTCACCATTTCGCATTGCTTCCAAACGACCTTTCTCTCACTGCTCTTTTAGGCTTCCGATTGAACTGAGCTTCTGCGTCGAGTCCATGCTTCCCTTCCATTCTGCAACTTCTTCGGCATTAATGACTTCGATGCTTTCTGTTTCTCCCCATAGCTTTGGTTGGCTTTCAGAAGTATCTATTTGGCAGTGTCTGGCTTGCAAACTTCATGATATATGA MASFAARSIFRSSSAKAATLLSAGARAAPASSPFRIASKRPFSHCSFRLPIELSFCVESMLPFHSATSSALMTSMLSVSPHSFGWLSEVSIWQCLACKLHDI* Homology
BLAST of CsGy5G028310 vs. ExPASy Swiss-Prot
Match: Q93ZJ3 (Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1) HSP 1 Score: 68.6 bits (166), Expect = 4.9e-11 Identity = 40/85 (47.06%), Postives = 59/85 (69.41%), Query Frame = 0
BLAST of CsGy5G028310 vs. NCBI nr
Match: XP_004148697.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1 [Cucumis sativus]) HSP 1 Score: 169 bits (428), Expect = 2.23e-52 Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0
BLAST of CsGy5G028310 vs. NCBI nr
Match: XP_004148698.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X2 [Cucumis sativus] >KGN52462.1 hypothetical protein Csa_008896 [Cucumis sativus]) HSP 1 Score: 167 bits (424), Expect = 8.81e-52 Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0
BLAST of CsGy5G028310 vs. NCBI nr
Match: XP_008459321.1 (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucumis melo]) HSP 1 Score: 156 bits (395), Expect = 2.40e-47 Identity = 82/90 (91.11%), Postives = 86/90 (95.56%), Query Frame = 0
BLAST of CsGy5G028310 vs. NCBI nr
Match: KAA0039497.1 (protein NUCLEAR FUSION DEFECTIVE 6 [Cucumis melo var. makuwa]) HSP 1 Score: 155 bits (392), Expect = 7.33e-47 Identity = 81/90 (90.00%), Postives = 86/90 (95.56%), Query Frame = 0
BLAST of CsGy5G028310 vs. NCBI nr
Match: XP_008459322.1 (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucumis melo]) HSP 1 Score: 155 bits (391), Expect = 9.50e-47 Identity = 81/89 (91.01%), Postives = 85/89 (95.51%), Query Frame = 0
BLAST of CsGy5G028310 vs. ExPASy TrEMBL
Match: A0A0A0KVK4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636540 PE=4 SV=1) HSP 1 Score: 167 bits (424), Expect = 4.27e-52 Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0
BLAST of CsGy5G028310 vs. ExPASy TrEMBL
Match: A0A1S3CB40 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498488 PE=4 SV=1) HSP 1 Score: 156 bits (395), Expect = 1.16e-47 Identity = 82/90 (91.11%), Postives = 86/90 (95.56%), Query Frame = 0
BLAST of CsGy5G028310 vs. ExPASy TrEMBL
Match: A0A5A7TDD1 (Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G003170 PE=4 SV=1) HSP 1 Score: 155 bits (392), Expect = 3.55e-47 Identity = 81/90 (90.00%), Postives = 86/90 (95.56%), Query Frame = 0
BLAST of CsGy5G028310 vs. ExPASy TrEMBL
Match: A0A1S3C9E2 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498488 PE=4 SV=1) HSP 1 Score: 155 bits (391), Expect = 4.60e-47 Identity = 81/89 (91.01%), Postives = 85/89 (95.51%), Query Frame = 0
BLAST of CsGy5G028310 vs. ExPASy TrEMBL
Match: A0A5D3CTR8 (Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00250 PE=4 SV=1) HSP 1 Score: 155 bits (391), Expect = 6.44e-47 Identity = 81/88 (92.05%), Postives = 85/88 (96.59%), Query Frame = 0
BLAST of CsGy5G028310 vs. TAIR 10
Match: AT2G20585.1 (nuclear fusion defective 6 ) HSP 1 Score: 68.6 bits (166), Expect = 3.4e-12 Identity = 40/85 (47.06%), Postives = 59/85 (69.41%), Query Frame = 0
BLAST of CsGy5G028310 vs. TAIR 10
Match: AT2G20585.2 (nuclear fusion defective 6 ) HSP 1 Score: 68.6 bits (166), Expect = 3.4e-12 Identity = 40/85 (47.06%), Postives = 59/85 (69.41%), Query Frame = 0
BLAST of CsGy5G028310 vs. TAIR 10
Match: AT2G33847.1 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.4); Has 74 Blast hits to 74 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 68.6 bits (166), Expect = 3.4e-12 Identity = 41/80 (51.25%), Postives = 54/80 (67.50%), Query Frame = 0
BLAST of CsGy5G028310 vs. TAIR 10
Match: AT2G33847.2 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.3); Has 71 Blast hits to 71 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 68.6 bits (166), Expect = 3.4e-12 Identity = 41/80 (51.25%), Postives = 54/80 (67.50%), Query Frame = 0
BLAST of CsGy5G028310 vs. TAIR 10
Match: AT2G20585.3 (nuclear fusion defective 6 ) HSP 1 Score: 68.6 bits (166), Expect = 3.4e-12 Identity = 40/85 (47.06%), Postives = 59/85 (69.41%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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