CsGy5G025900 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy5G025900
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	60S acidic ribosomal protein P2-like
Location	Gy14Chr5: 29927204 .. 29929024 (+)
RNA-Seq Expression	CsGy5G025900
Synteny	CsGy5G025900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTTTCTCCATCTTCCGTTTCCGATTTGCAGTCTGCAAAGAACGATGAAGATCGTTGCTGCTTATTTACTCGCCGTTTTGGGAGGCAACTCCAACCCATCAGCTAAAGATTTGAAGGATATTCTCGGATCTGGTAAATTTTCATCTCCCTCTCATTTTCCCTTTATGTTTTCTTCGATTCTATAGTTTTTTGTGGACTTCTGGAGAATTTATGTGCTGATGTCTAGTTTTTGGTGTTTATTTGGTTAGTATGTATTGTTAGTTTTATAGTAATGTTTCTTATTTGGTATCTTGTTATTTTACTTGCTTCGTTGCTATTCTCTGCCATTTCGAACTATGCAGTTTCGTCTTTAATAGTTTTGTTATAGCTATAGTTAATTGTTCTACCTCATTTTTGGGATTGGGTAACAATAAGAAGAATGTTTGTTATTTGTGGCTGGACATCATTAGATTTTAATTATATGAAACCTCTAATTATTGTACTTTTCTCGATGGTTTAAGAGATTGGAGCTGCAATACGTTATGTTAAATTACATATGTCAGACTATTATTTGGTTTTGATCTTATATTTGTATGAAATGTTAAATCTTAATGACTCTTATGCTTTATTCCCAGTCCTGAAGTCATGTTATACTTCTGAATTTTATTTCTCACATTTGCATTGAATATGGAGTTACATTGTAGTCAAATATGTTGAATGGGGTCATAATTTATCTTTCCCGAACCGTTTTGCAGTTGGAGCTGAAGTTGATGAGGAAAGAATTAATCTTCTGCTCTCTAATGTTAAGGGTAAGGACATTACAGAGCTCATCGCATCCGGAAGAGAAAAGCTAGCATCTGTTCCTTCTGGTGGAGGTGCTGCTGTGGCAGTTGCTGCCGGAGGTGGTGGTGGCGGTGCTGCTGCCCCTGCTCCAGCTGAAGCAAAGAAAGAGGAGAAGGTTGAAGAGAAGGAAGAATCAGACGATGTAAGCTTCCTTCGTTTCTTGGAATTGCATTTTAAACAGTTGAAATTTTTGCACCTAAATATATTGTAGAAAATGCTAAAAGATTCTCCACCTTAAAAAACACCCAATGTAGGTTTTTAATTGATTCTGTGATATGTTCAGCTTCTAAACACTACTTCCCTTAGGTTTTTTTAAGAATGAACTGCTCACGATTTATAATCACTAAAGAAACTTGTTTTTCAAAAATTGTTTTTGCTTTTTGAATTTTGTTTGATAGTATGGGGTTCATTTTAAAACTACTAGGGTAGAGTAGTTGTCCATCTATCTTATAAACAGTTTGATTCTTGTTAGTTTTTTCTAGGGATTCTCAACATGCCCCATCAAGATCTTCCTCATCTTGATTGGGTCTCAATTTAGGACCGAATGCTTGTTTGGATATTGTGTGCTGGGATACCATATTTGATAGCTAGCATTAGTCGATGTAACCTTATAAAATGAACTGGTAATGTGGAAAGCCACATTTCAAAATTTTGAATGGCAATTCACATAAACTTTAAATTAATGAAGTGTTTGAAATGGCTATCATGAATCAATCAAAATTTTCTCATCTAGTTTTCTTTATTTGTATCTTTGAGAATCATTTTTAAGTTCATGTAATTTCTTCTAATTCCTTGTTTAATTTTTGTTTGCAGGATATGGGCTTCAGTCTTTTCGATTAAGTATAATAACAAAGTTGAATGTTCAGAGATTCTTCAAGATTTTAGATTTTGGAATTTTTGTTTTTTCACATGTAGTGTCTTAACATTATCGTGGTGTTATGATGAGCCTAATGTTGTACTTTTATTTTAATTAATGAATTTTCTTCGTAATTTTTGG

mRNA sequence

TCTCTTTCTCCATCTTCCGTTTCCGATTTGCAGTCTGCAAAGAACGATGAAGATCGTTGCTGCTTATTTACTCGCCGTTTTGGGAGGCAACTCCAACCCATCAGCTAAAGATTTGAAGGATATTCTCGGATCTGTTGGAGCTGAAGTTGATGAGGAAAGAATTAATCTTCTGCTCTCTAATGTTAAGGGTAAGGACATTACAGAGCTCATCGCATCCGGAAGAGAAAAGCTAGCATCTGTTCCTTCTGGTGGAGGTGCTGCTGTGGCAGTTGCTGCCGGAGGTGGTGGTGGCGGTGCTGCTGCCCCTGCTCCAGCTGAAGCAAAGAAAGAGGAGAAGGTTGAAGAGAAGGAAGAATCAGACGATGATATGGGCTTCAGTCTTTTCGATTAAGTATAATAACAAAGTTGAATGTTCAGAGATTCTTCAAGATTTTAGATTTTGGAATTTTTGTTTTTTCACATGTAGTGTCTTAACATTATCGTGGTGTTATGATGAGCCTAATGTTGTACTTTTATTTTAATTAATGAATTTTCTTCGTAATTTTTGG

Coding sequence (CDS)

ATGAAGATCGTTGCTGCTTATTTACTCGCCGTTTTGGGAGGCAACTCCAACCCATCAGCTAAAGATTTGAAGGATATTCTCGGATCTGTTGGAGCTGAAGTTGATGAGGAAAGAATTAATCTTCTGCTCTCTAATGTTAAGGGTAAGGACATTACAGAGCTCATCGCATCCGGAAGAGAAAAGCTAGCATCTGTTCCTTCTGGTGGAGGTGCTGCTGTGGCAGTTGCTGCCGGAGGTGGTGGTGGCGGTGCTGCTGCCCCTGCTCCAGCTGAAGCAAAGAAAGAGGAGAAGGTTGAAGAGAAGGAAGAATCAGACGATGATATGGGCTTCAGTCTTTTCGATTAA

Protein sequence

MKIVAAYLLAVLGGNSNPSAKDLKDILGSVGAEVDEERINLLLSNVKGKDITELIASGREKLASVPSGGGAAVAVAAGGGGGGAAAPAPAEAKKEEKVEEKEESDDDMGFSLFD*

Homology

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BLAST of CsGy5G025900 vs. ExPASy Swiss-Prot
Match: Q9LXM8 (60S acidic ribosomal protein P2-4 OS=Arabidopsis thaliana OX=3702 GN=RPP2D PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 9.2e-35
Identity = 84/114 (73.68%), Postives = 94/114 (82.46%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSNPSAKDLKDILGSVGAEVDEERINLLLSNVKGKDITELIASGRE 60
           MK+ AA+LLAVLGGN+NPSA ++KDI+G+VGA+VD E I LLL  V GKDI ELIASGRE
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 61  KLASVPSGGGAAVAVAAGGGGGGAAAPAPAEAKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGG AV+ A   GGGGAAAPA    KKE K EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGVAVSAAPSSGGGGAAAPA---EKKEAKKEEKEESDDDMGFSLFE 111

[Close]

BLAST of CsGy5G025900 vs. ExPASy Swiss-Prot
Match: P51407 (60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana OX=3702 GN=RPP2A PE=3 SV=2)

HSP 1 Score: 144.4 bits (363), Expect = 7.8e-34
Identity = 83/116 (71.55%), Postives = 97/116 (83.62%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSNPSAKDLKDILGSVGAEVDEERINLLLSNVKGKDITELIASGRE 60
           MK+VAA+LLAVL G ++P+  D+KDILGSVGAE ++ +I LLL  VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPSGGGAAVAVAA--GGGGGGAAAPAPAEAKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGG  VAVA+   GGGGG  APA AE+KKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGAPA-AESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of CsGy5G025900 vs. ExPASy Swiss-Prot
Match: P41099 (60S acidic ribosomal protein P2 OS=Parthenium argentatum OX=35935 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.0e-33
Identity = 81/114 (71.05%), Postives = 97/114 (85.09%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSNPSAKDLKDILGSVGAEVDEERINLLLSNVKGKDITELIASGRE 60
           MK++AA+LLA+LGGN++P+ +DLK IL SVGA+ D+++I LLLS VKGKDITELIASGRE
Sbjct: 1   MKVIAAFLLALLGGNTSPTDEDLKSILASVGADADDDKIELLLSQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAVAVAAGGGGGGAAAPAPAEAKKEEKVEEKEESDDDMGFSLFD 115
           +LASVPSGGG AVA AAGGGGG A A A  E KKEEK E  EESD+++GFSLFD
Sbjct: 61  RLASVPSGGGVAVAAAAGGGGGDAPAAAAEEPKKEEKSE--EESDEELGFSLFD 112

[Close]

BLAST of CsGy5G025900 vs. ExPASy Swiss-Prot
Match: Q9SLF7 (60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana OX=3702 GN=RPP2B PE=1 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 2.3e-33
Identity = 83/118 (70.34%), Postives = 98/118 (83.05%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSNPSAKDLKDILGSVGAEVDEERINLLLSNVKGKDITELIASGRE 60
           MK+VAAYLLAVL G ++P++ D+K ILGSVGAE ++ +I LLL  VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPSGGGAAVAVAA----GGGGGGAAAPAPAEAKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGG  VAVA+    GGGGGGA+A   AE+KKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASA---AESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of CsGy5G025900 vs. ExPASy Swiss-Prot
Match: P46252 (60S acidic ribosomal protein P2A OS=Zea mays OX=4577 GN=RPP2A PE=1 SV=3)

HSP 1 Score: 140.6 bits (353), Expect = 1.1e-32
Identity = 86/114 (75.44%), Postives = 92/114 (80.70%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSNPSAKDLKDILGSVGAEVDEERINLLLSNVKGKDITELIASGRE 60
           MK VAAYLLAVL GN++PSA DL  IL SVG EVD E++ LLLS + GKDITELIA+GRE
Sbjct: 1   MKFVAAYLLAVLAGNASPSADDLTAILESVGCEVDNEKMELLLSQLSGKDITELIAAGRE 60

Query: 61  KLASVPSGGGAAVAVAAGGGGGGAAAPAPAEAKKEEKVEEKEESDDDMGFSLFD 115
           K ASVP GGG  VAVAA     G AAPA AEAKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KFASVPCGGG-GVAVAAAAPAAGGAAPA-AEAKKEEKVEEKEESDDDMGFSLFD 112

[Close]

BLAST of CsGy5G025900 vs. NCBI nr
Match: XP_004150488.1 (60S acidic ribosomal protein P2-4 [Cucumis sativus] >KGN52200.1 hypothetical protein Csa_009106 [Cucumis sativus])

HSP 1 Score: 205 bits (522), Expect = 3.05e-66
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSNPSAKDLKDILGSVGAEVDEERINLLLSNVKGKDITELIASGRE 60
           MKIVAAYLLAVLGGNSNPSAKDLKDILGSVGAEVDEERINLLLSNVKGKDITELIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNSNPSAKDLKDILGSVGAEVDEERINLLLSNVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAVAVAAGGGGGGAAAPAPAEAKKEEKVEEKEESDDDMGFSLFD 114
           KLASVPSGGGAAVAVAAGGGGGGAAAPAPAEAKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAAVAVAAGGGGGGAAAPAPAEAKKEEKVEEKEESDDDMGFSLFD 114

[Close]

BLAST of CsGy5G025900 vs. NCBI nr
Match: XP_008446770.1 (PREDICTED: 60S acidic ribosomal protein P2-4-like [Cucumis melo])

HSP 1 Score: 199 bits (506), Expect = 8.42e-64
Identity = 109/114 (95.61%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSNPSAKDLKDILGSVGAEVDEERINLLLSNVKGKDITELIASGRE 60
           MKIVAAYLLAVLGGN++PSAKDLKDILGSVGAE+DEERI LLLSNVKGKD+TELIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNTSPSAKDLKDILGSVGAEIDEERIELLLSNVKGKDVTELIASGRE 60

Query: 61  KLASVPSGGGAAVAVAAGGGGGGAAAPAPAEAKKEEKVEEKEESDDDMGFSLFD 114
           KLASVPSGGGAAVAVAAGGGGGGAAAPAPAEAKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAAVAVAAGGGGGGAAAPAPAEAKKEEKVEEKEESDDDMGFSLFD 114

[Close]

BLAST of CsGy5G025900 vs. NCBI nr
Match: XP_022957078.1 (60S acidic ribosomal protein P2-1-like [Cucurbita moschata] >XP_023533493.1 60S acidic ribosomal protein P2-1-like [Cucurbita pepo subsp. pepo] >KAG6601213.1 60S acidic ribosomal protein P2-4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032007.1 60S acidic ribosomal protein P2-4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 188 bits (478), Expect = 1.57e-59
Identity = 104/114 (91.23%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSNPSAKDLKDILGSVGAEVDEERINLLLSNVKGKDITELIASGRE 60
           MKIVAAYLLAVLGGN++PSAKDLKDILGSVGAEVDE++I LL+S+VKGKDITELIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAVAVAAGGGGGGAAAPAPAEAKKEEKVEEKEESDDDMGFSLFD 114
           KLASVPSGGGAAVAVAA GGGGGAAAPA AE+KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAAVAVAAAGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 114

[Close]

BLAST of CsGy5G025900 vs. NCBI nr
Match: XP_022984367.1 (60S acidic ribosomal protein P2-4-like [Cucurbita maxima])

HSP 1 Score: 188 bits (478), Expect = 1.57e-59
Identity = 104/114 (91.23%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSNPSAKDLKDILGSVGAEVDEERINLLLSNVKGKDITELIASGRE 60
           MKIVAAYLLAVLGGN++PSAKDLKDILGSVGAEVDE++I LL+S+VKGKDITELIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAVAVAAGGGGGGAAAPAPAEAKKEEKVEEKEESDDDMGFSLFD 114
           KLASVPSGGGAAVAVAA GGGGGAAAPA AE+KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAAVAVAASGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 114

[Close]

BLAST of CsGy5G025900 vs. NCBI nr
Match: XP_038891319.1 (60S acidic ribosomal protein P2-2-like [Benincasa hispida])

HSP 1 Score: 186 bits (472), Expect = 1.33e-58
Identity = 105/115 (91.30%), Postives = 109/115 (94.78%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSNPSAKDLKDILGSVGAEVDEERINLLLSNVKGKDITELIASGRE 60
           MKIVAAYLLAVLGGNS+PSAKDLKDILGSVGAE+DEERI LLLSNVKGKD+TELIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGAEIDEERIELLLSNVKGKDVTELIASGRE 60

Query: 61  KLASVPSGGGAAVAVAA-GGGGGGAAAPAPAEAKKEEKVEEKEESDDDMGFSLFD 114
           KLASVPSGGGA VA AA GGGGGGA APA AE+KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAVVAAAAVGGGGGGADAPAAAESKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of CsGy5G025900 vs. ExPASy TrEMBL
Match: A0A0A0KRE0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G615230 PE=3 SV=1)

HSP 1 Score: 205 bits (522), Expect = 1.48e-66
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSNPSAKDLKDILGSVGAEVDEERINLLLSNVKGKDITELIASGRE 60
           MKIVAAYLLAVLGGNSNPSAKDLKDILGSVGAEVDEERINLLLSNVKGKDITELIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNSNPSAKDLKDILGSVGAEVDEERINLLLSNVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAVAVAAGGGGGGAAAPAPAEAKKEEKVEEKEESDDDMGFSLFD 114
           KLASVPSGGGAAVAVAAGGGGGGAAAPAPAEAKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAAVAVAAGGGGGGAAAPAPAEAKKEEKVEEKEESDDDMGFSLFD 114

[Close]

BLAST of CsGy5G025900 vs. ExPASy TrEMBL
Match: A0A1S3BFW0 (60S acidic ribosomal protein P2-4-like OS=Cucumis melo OX=3656 GN=LOC103489399 PE=3 SV=1)

HSP 1 Score: 199 bits (506), Expect = 4.08e-64
Identity = 109/114 (95.61%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSNPSAKDLKDILGSVGAEVDEERINLLLSNVKGKDITELIASGRE 60
           MKIVAAYLLAVLGGN++PSAKDLKDILGSVGAE+DEERI LLLSNVKGKD+TELIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNTSPSAKDLKDILGSVGAEIDEERIELLLSNVKGKDVTELIASGRE 60

Query: 61  KLASVPSGGGAAVAVAAGGGGGGAAAPAPAEAKKEEKVEEKEESDDDMGFSLFD 114
           KLASVPSGGGAAVAVAAGGGGGGAAAPAPAEAKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAAVAVAAGGGGGGAAAPAPAEAKKEEKVEEKEESDDDMGFSLFD 114

[Close]

BLAST of CsGy5G025900 vs. ExPASy TrEMBL
Match: A0A6J1J1Z8 (60S acidic ribosomal protein P2-4-like OS=Cucurbita maxima OX=3661 GN=LOC111482688 PE=3 SV=1)

HSP 1 Score: 188 bits (478), Expect = 7.58e-60
Identity = 104/114 (91.23%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSNPSAKDLKDILGSVGAEVDEERINLLLSNVKGKDITELIASGRE 60
           MKIVAAYLLAVLGGN++PSAKDLKDILGSVGAEVDE++I LL+S+VKGKDITELIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAVAVAAGGGGGGAAAPAPAEAKKEEKVEEKEESDDDMGFSLFD 114
           KLASVPSGGGAAVAVAA GGGGGAAAPA AE+KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAAVAVAASGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 114

[Close]

BLAST of CsGy5G025900 vs. ExPASy TrEMBL
Match: A0A6J1GZ75 (60S acidic ribosomal protein P2-1-like OS=Cucurbita moschata OX=3662 GN=LOC111458566 PE=3 SV=1)

HSP 1 Score: 188 bits (478), Expect = 7.58e-60
Identity = 104/114 (91.23%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSNPSAKDLKDILGSVGAEVDEERINLLLSNVKGKDITELIASGRE 60
           MKIVAAYLLAVLGGN++PSAKDLKDILGSVGAEVDE++I LL+S+VKGKDITELIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAVAVAAGGGGGGAAAPAPAEAKKEEKVEEKEESDDDMGFSLFD 114
           KLASVPSGGGAAVAVAA GGGGGAAAPA AE+KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAAVAVAAAGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 114

[Close]

BLAST of CsGy5G025900 vs. ExPASy TrEMBL
Match: A0A5D3CBJ1 (60S acidic ribosomal protein P2-4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002060 PE=3 SV=1)

HSP 1 Score: 182 bits (462), Expect = 6.00e-57
Identity = 103/113 (91.15%), Postives = 108/113 (95.58%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSNPSAKDLKDILGSVGAEVDEERINLLLSNVKGKDITELIASGRE 60
           MKIVAAYLLAVLGGN++PSAKDLKDILGSVGAE+DEERI LLLSNVKGKD+TELIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNTSPSAKDLKDILGSVGAEIDEERIELLLSNVKGKDVTELIASGRE 60

Query: 61  KLASVPSGGGAAVAVAAGGGGGGAAAPAPAEAKKEEKVEEKEESDDDMGFSLF 113
           KLASVPSGGGAAVAVAAGGGGGGAAAPAPAEAKKEEKVEEKEESDD + F  F
Sbjct: 61  KLASVPSGGGAAVAVAAGGGGGGAAAPAPAEAKKEEKVEEKEESDD-VSFLRF 112

[Close]

BLAST of CsGy5G025900 vs. TAIR 10
Match: AT3G44590.2 (60S acidic ribosomal protein family )

HSP 1 Score: 147.5 bits (371), Expect = 6.5e-36
Identity = 84/114 (73.68%), Postives = 94/114 (82.46%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSNPSAKDLKDILGSVGAEVDEERINLLLSNVKGKDITELIASGRE 60
           MK+ AA+LLAVLGGN+NPSA ++KDI+G+VGA+VD E I LLL  V GKDI ELIASGRE
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 61  KLASVPSGGGAAVAVAAGGGGGGAAAPAPAEAKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGG AV+ A   GGGGAAAPA    KKE K EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGVAVSAAPSSGGGGAAAPA---EKKEAKKEEKEESDDDMGFSLFE 111

[Close]

BLAST of CsGy5G025900 vs. TAIR 10
Match: AT3G44590.1 (60S acidic ribosomal protein family )

HSP 1 Score: 147.5 bits (371), Expect = 6.5e-36
Identity = 84/114 (73.68%), Postives = 94/114 (82.46%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSNPSAKDLKDILGSVGAEVDEERINLLLSNVKGKDITELIASGRE 60
           MK+ AA+LLAVLGGN+NPSA ++KDI+G+VGA+VD E I LLL  V GKDI ELIASGRE
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 61  KLASVPSGGGAAVAVAAGGGGGGAAAPAPAEAKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGG AV+ A   GGGGAAAPA    KKE K EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGVAVSAAPSSGGGGAAAPA---EKKEAKKEEKEESDDDMGFSLFE 111

[Close]

BLAST of CsGy5G025900 vs. TAIR 10
Match: AT2G27720.1 (60S acidic ribosomal protein family )

HSP 1 Score: 144.4 bits (363), Expect = 5.5e-35
Identity = 83/116 (71.55%), Postives = 97/116 (83.62%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSNPSAKDLKDILGSVGAEVDEERINLLLSNVKGKDITELIASGRE 60
           MK+VAA+LLAVL G ++P+  D+KDILGSVGAE ++ +I LLL  VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPSGGGAAVAVAA--GGGGGGAAAPAPAEAKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGG  VAVA+   GGGGG  APA AE+KKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGAPA-AESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of CsGy5G025900 vs. TAIR 10
Match: AT2G27710.1 (60S acidic ribosomal protein family )

HSP 1 Score: 142.9 bits (359), Expect = 1.6e-34
Identity = 83/118 (70.34%), Postives = 98/118 (83.05%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSNPSAKDLKDILGSVGAEVDEERINLLLSNVKGKDITELIASGRE 60
           MK+VAAYLLAVL G ++P++ D+K ILGSVGAE ++ +I LLL  VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPSGGGAAVAVAA----GGGGGGAAAPAPAEAKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGG  VAVA+    GGGGGGA+A   AE+KKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASA---AESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of CsGy5G025900 vs. TAIR 10
Match: AT2G27710.2 (60S acidic ribosomal protein family )

HSP 1 Score: 142.9 bits (359), Expect = 1.6e-34
Identity = 83/118 (70.34%), Postives = 98/118 (83.05%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSNPSAKDLKDILGSVGAEVDEERINLLLSNVKGKDITELIASGRE 60
           MK+VAAYLLAVL G ++P++ D+K ILGSVGAE ++ +I LLL  VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPSGGGAAVAVAA----GGGGGGAAAPAPAEAKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGG  VAVA+    GGGGGGA+A   AE+KKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASA---AESKKEEKKEEKEESDDDMGFSLFE 115

The following BLAST results are available for this feature:

BLAST of CsGy5G025900 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LXM8	9.2e-35	73.68	60S acidic ribosomal protein P2-4 OS=Arabidopsis thaliana OX=3702 GN=RPP2D PE=3 ...	[more]
P51407	7.8e-34	71.55	60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana OX=3702 GN=RPP2A PE=3 ...	[more]
P41099	1.0e-33	71.05	60S acidic ribosomal protein P2 OS=Parthenium argentatum OX=35935 PE=3 SV=1	[more]
Q9SLF7	2.3e-33	70.34	60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana OX=3702 GN=RPP2B PE=1 ...	[more]
P46252	1.1e-32	75.44	60S acidic ribosomal protein P2A OS=Zea mays OX=4577 GN=RPP2A PE=1 SV=3	[more]

BLAST of CsGy5G025900 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150488.1	3.05e-66	100.00	60S acidic ribosomal protein P2-4 [Cucumis sativus] >KGN52200.1 hypothetical pro...	[more]
XP_008446770.1	8.42e-64	95.61	PREDICTED: 60S acidic ribosomal protein P2-4-like [Cucumis melo]	[more]
XP_022957078.1	1.57e-59	91.23	60S acidic ribosomal protein P2-1-like [Cucurbita moschata] >XP_023533493.1 60S ...	[more]
XP_022984367.1	1.57e-59	91.23	60S acidic ribosomal protein P2-4-like [Cucurbita maxima]	[more]
XP_038891319.1	1.33e-58	91.30	60S acidic ribosomal protein P2-2-like [Benincasa hispida]	[more]

BLAST of CsGy5G025900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRE0	1.48e-66	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G615230 PE=3 SV=1	[more]
A0A1S3BFW0	4.08e-64	95.61	60S acidic ribosomal protein P2-4-like OS=Cucumis melo OX=3656 GN=LOC103489399 P...	[more]
A0A6J1J1Z8	7.58e-60	91.23	60S acidic ribosomal protein P2-4-like OS=Cucurbita maxima OX=3661 GN=LOC1114826...	[more]
A0A6J1GZ75	7.58e-60	91.23	60S acidic ribosomal protein P2-1-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A5D3CBJ1	6.00e-57	91.15	60S acidic ribosomal protein P2-4-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]

BLAST of CsGy5G025900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G44590.2	6.5e-36	73.68	60S acidic ribosomal protein family	[more]
AT3G44590.1	6.5e-36	73.68	60S acidic ribosomal protein family	[more]
AT2G27720.1	5.5e-35	71.55	60S acidic ribosomal protein family	[more]
AT2G27710.1	1.6e-34	70.34	60S acidic ribosomal protein family	[more]
AT2G27710.2	1.6e-34	70.34	60S acidic ribosomal protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 17..113 e-value: 1.9E-25 score: 89.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..114
None	No IPR available	PANTHER	PTHR21141:SF83	60S ACIDIC RIBOSOMAL PROTEIN P2A-LIKE	coord: 2..114
IPR038716	Ribosomal protein P1/P2, N-terminal domain	GENE3D	1.10.10.1410		coord: 1..59 e-value: 7.2E-28 score: 98.5
IPR044076	Ribosomal protein P2	PANTHER	PTHR21141	60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER	coord: 2..114
IPR044076	Ribosomal protein P2	CDD	cd05833	Ribosomal_P2	coord: 1..114 e-value: 7.51618E-35 score: 113.898
IPR027534	Ribosomal protein L12/P1/P2 family	HAMAP	MF_01478	Ribosomal_L12_arch	coord: 2..114 score: 17.22237

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G025900.1	CsGy5G025900.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002182	cytoplasmic translational elongation
biological_process	GO:0006414	translational elongation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome