CsGy5G025770 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy5G025770
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	transformer-2 protein homolog alpha-like
Location	Gy14Chr5: 29831988 .. 29832599 (-)
RNA-Seq Expression	CsGy5G025770
Synteny	CsGy5G025770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGAAGAAAGATTGCATTGATTTTGATTCTGATCTATTCATCTATGCTGCCTTTTTCATCTGCTTTCAAACAACTCTTCCTAACCGGTCATTTTCTTTATTCTCTCCTTTTTTTCTTTCGAAAGATTCGAATTTTCCACCTTAGAATGTCATGTCAAATTTGCCTAATTATATCGTAGGGTTACTATTTTTTGTTCTGGGTAACAATTTCTTGATATATTTTGGACTTTAGAGACAATCTAAGTGTCTAATAGCTCGATCATTAACCTATATGTGTGTACTGCAGACAACAGTAATCACCAAGAAAGTGAGCATATGGAAAAACAATATGGTAGAAGATACAATGTAGAGGGTCGACATGGTTATACAAACGGGATCCCAACACATATAGCAATTACCCGCGGAGGAGGAAGAGGCGGCGGCGGCGGCGGCAGAGGTAACGGTGCCGCAGGAATTCACGATCAAAACTGCATGGAGTTGATAGCAGCTGCAGTTTCCATATCAGTTGCATACTTGTGTGGACTTATTTGATATATGAAGAACAATAATACATATCGATCCAAAAACAATATATTCAATATTAGGTGGTGTGGAAATTAATAAGTTGT

mRNA sequence

ATGGGAAGAAGAAAGATTGCATTGATTTTGATTCTGATCTATTCATCTATGCTGCCTTTTTCATCTGCTTTCAAACAACTCTTCCTAACCGACAACAGTAATCACCAAGAAAGTGAGCATATGGAAAAACAATATGGTAGAAGATACAATGTAGAGGGTCGACATGGTTATACAAACGGGATCCCAACACATATAGCAATTACCCGCGGAGGAGGAAGAGGCGGCGGCGGCGGCGGCAGAGGTAACGGTGCCGCAGGAATTCACGATCAAAACTGCATGGAGTTGATAGCAGCTGCAGTTTCCATATCAGTTGCATACTTGTGTGGACTTATTTGATATATGAAGAACAATAATACATATCGATCCAAAAACAATATATTCAATATTAGGTGGTGTGGAAATTAATAAGTTGT

Coding sequence (CDS)

ATGGGAAGAAGAAAGATTGCATTGATTTTGATTCTGATCTATTCATCTATGCTGCCTTTTTCATCTGCTTTCAAACAACTCTTCCTAACCGACAACAGTAATCACCAAGAAAGTGAGCATATGGAAAAACAATATGGTAGAAGATACAATGTAGAGGGTCGACATGGTTATACAAACGGGATCCCAACACATATAGCAATTACCCGCGGAGGAGGAAGAGGCGGCGGCGGCGGCGGCAGAGGTAACGGTGCCGCAGGAATTCACGATCAAAACTGCATGGAGTTGATAGCAGCTGCAGTTTCCATATCAGTTGCATACTTGTGTGGACTTATTTGA

Protein sequence

MGRRKIALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHGYTNGIPTHIAITRGGGRGGGGGGRGNGAAGIHDQNCMELIAAAVSISVAYLCGLI*

Homology

[Close]

BLAST of CsGy5G025770 vs. NCBI nr
Match: KGN52711.2 (hypothetical protein Csa_008218, partial [Cucumis sativus])

HSP 1 Score: 214 bits (546), Expect = 5.71e-70
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MGRRKIALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHGYTNG 60
           MGRRKIALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHGYTNG
Sbjct: 3   MGRRKIALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHGYTNG 62

Query: 61  IPTHIAITRGGGRGGGGGGRGNGAAGIHDQNCMELIAAAVSISVAYLCGLI 111
           IPTHIAITRGGGRGGGGGGRGNGAAGIHDQNCMELIAAAVSISVAYLCGLI
Sbjct: 63  IPTHIAITRGGGRGGGGGGRGNGAAGIHDQNCMELIAAAVSISVAYLCGLI 113

[Close]

BLAST of CsGy5G025770 vs. NCBI nr
Match: KGN52185.1 (hypothetical protein Csa_009431 [Cucumis sativus])

HSP 1 Score: 167 bits (423), Expect = 3.36e-51
Identity = 94/114 (82.46%), Postives = 98/114 (85.96%), Query Frame = 0


Query: 1   MGRRKI--ALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHGYT 60
           MGRR+   ALILILIYSSMLPFS AFKQL LTDNS HQESEHMEKQYGRRYN+EGRHGYT
Sbjct: 1   MGRRRTETALILILIYSSMLPFSFAFKQLSLTDNSKHQESEHMEKQYGRRYNIEGRHGYT 60

Query: 61  NGIPTHIAITRGGGRGGGGGG-RGNGAAGIHDQNCMELIAAAVSISVAYLCGLI 111
           +GIP HIAIT   GRGG G    GNGAAGIHDQNCM+ IAAAVSISVAYLCGLI
Sbjct: 61  DGIPEHIAITHSEGRGGVGVSVGGNGAAGIHDQNCMKFIAAAVSISVAYLCGLI 114

[Close]

BLAST of CsGy5G025770 vs. NCBI nr
Match: XP_008446753.1 (PREDICTED: transformer-2 protein homolog alpha-like [Cucumis melo])

HSP 1 Score: 153 bits (387), Expect = 1.09e-45
Identity = 92/118 (77.97%), Postives = 100/118 (84.75%), Query Frame = 0


Query: 1   MGRRK----IALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHG 60
           MGRR+    IALILILIYSSM+  S AFKQLF+TD+  HQESEHMEK +GRRYN+EGRHG
Sbjct: 1   MGRRRRRTEIALILILIYSSMVH-SFAFKQLFVTDSIKHQESEHMEK-HGRRYNIEGRHG 60

Query: 61  YTNGIPTH-IAITRGGGRGGGGGGRG--NGAAGIHDQNCMELIAAAVSISVAYLCGLI 111
           YTNGIP H I ITRGGGRGGGGGGRG  NGA GIHD+N M+ IAAAVSISVAYLCGLI
Sbjct: 61  YTNGIPIHDITITRGGGRGGGGGGRGGGNGAGGIHDRNYMKFIAAAVSISVAYLCGLI 116

[Close]

BLAST of CsGy5G025770 vs. NCBI nr
Match: XP_022987217.1 (glycine-rich protein DOT1-like [Cucurbita maxima])

HSP 1 Score: 62.8 bits (151), Expect = 1.93e-09
Identity = 45/84 (53.57%), Postives = 53/84 (63.10%), Query Frame = 0


Query: 3  RRKIALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHGYTNGIP 62
          RR++ALIL+L++SSM+  S AFKQLF TD +  QESEH EK YG+   V         IP
Sbjct: 9  RREMALILMLLWSSMVA-SFAFKQLFTTDIAEFQESEHREK-YGKNGVV---------IP 68

Query: 63 THIAITRGGGRGGGGGGRGNGAAG 86
           HI I  GGG G GGGGRG    G
Sbjct: 69 MHIVIGLGGGGGSGGGGRGGSGGG 81

[Close]

BLAST of CsGy5G025770 vs. NCBI nr
Match: XP_023550250.1 (glycine-rich RNA-binding protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 54.7 bits (130), Expect = 1.32e-06
Identity = 58/137 (42.34%), Postives = 65/137 (47.45%), Query Frame = 0


Query: 7   ALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNV--------------- 66
           ALIL+L+ SSM+  S AFKQLF TD +  QESEH EK YG+   V               
Sbjct: 2   ALILMLLCSSMVA-SFAFKQLFTTDIAEFQESEHREK-YGKNGVVIPMRIVSRLGGGGGS 61

Query: 67  -----------EGRHGYTNGIPTHIAITRGGGRGGGGGGRGNGAAGIHD------QNCME 111
                       G  G + G       + GGG GGGGGGRG G  G H       QN M 
Sbjct: 62  GGGGSGGGGRGGGGGGSSGGGSGGRGGSPGGGSGGGGGGRG-GRGGAHSGTGNWHQNSMR 121

[Close]

BLAST of CsGy5G025770 vs. ExPASy TrEMBL
Match: A0A0A0KWM3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613630 PE=4 SV=1)

HSP 1 Score: 211 bits (538), Expect = 4.30e-69
Identity = 109/111 (98.20%), Postives = 110/111 (99.10%), Query Frame = 0


Query: 1   MGRRKIALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHGYTNG 60
           MGRRKIALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHGYTNG
Sbjct: 1   MGRRKIALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHGYTNG 60

Query: 61  IPTHIAITRGGGRGGGGGGRGNGAAGIHDQNCMELIAAAVSISVAYLCGLI 111
           IPTHIAITRGGGRGGGGGGRGNGAAGIHDQNCM+ IAAAVSISVAYLCGLI
Sbjct: 61  IPTHIAITRGGGRGGGGGGRGNGAAGIHDQNCMKFIAAAVSISVAYLCGLI 111

[Close]

BLAST of CsGy5G025770 vs. ExPASy TrEMBL
Match: A0A0A0KRC8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613620 PE=4 SV=1)

HSP 1 Score: 167 bits (423), Expect = 1.63e-51
Identity = 94/114 (82.46%), Postives = 98/114 (85.96%), Query Frame = 0


Query: 1   MGRRKI--ALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHGYT 60
           MGRR+   ALILILIYSSMLPFS AFKQL LTDNS HQESEHMEKQYGRRYN+EGRHGYT
Sbjct: 1   MGRRRTETALILILIYSSMLPFSFAFKQLSLTDNSKHQESEHMEKQYGRRYNIEGRHGYT 60

Query: 61  NGIPTHIAITRGGGRGGGGGG-RGNGAAGIHDQNCMELIAAAVSISVAYLCGLI 111
           +GIP HIAIT   GRGG G    GNGAAGIHDQNCM+ IAAAVSISVAYLCGLI
Sbjct: 61  DGIPEHIAITHSEGRGGVGVSVGGNGAAGIHDQNCMKFIAAAVSISVAYLCGLI 114

[Close]

BLAST of CsGy5G025770 vs. ExPASy TrEMBL
Match: A0A1S3BFU5 (transformer-2 protein homolog alpha-like OS=Cucumis melo OX=3656 GN=LOC103489385 PE=4 SV=1)

HSP 1 Score: 153 bits (387), Expect = 5.29e-46
Identity = 92/118 (77.97%), Postives = 100/118 (84.75%), Query Frame = 0


Query: 1   MGRRK----IALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHG 60
           MGRR+    IALILILIYSSM+  S AFKQLF+TD+  HQESEHMEK +GRRYN+EGRHG
Sbjct: 1   MGRRRRRTEIALILILIYSSMVH-SFAFKQLFVTDSIKHQESEHMEK-HGRRYNIEGRHG 60

Query: 61  YTNGIPTH-IAITRGGGRGGGGGGRG--NGAAGIHDQNCMELIAAAVSISVAYLCGLI 111
           YTNGIP H I ITRGGGRGGGGGGRG  NGA GIHD+N M+ IAAAVSISVAYLCGLI
Sbjct: 61  YTNGIPIHDITITRGGGRGGGGGGRGGGNGAGGIHDRNYMKFIAAAVSISVAYLCGLI 116

[Close]

BLAST of CsGy5G025770 vs. ExPASy TrEMBL
Match: A0A6J1J9S2 (glycine-rich protein DOT1-like OS=Cucurbita maxima OX=3661 GN=LOC111484806 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 9.36e-10
Identity = 45/84 (53.57%), Postives = 53/84 (63.10%), Query Frame = 0


Query: 3  RRKIALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHGYTNGIP 62
          RR++ALIL+L++SSM+  S AFKQLF TD +  QESEH EK YG+   V         IP
Sbjct: 9  RREMALILMLLWSSMVA-SFAFKQLFTTDIAEFQESEHREK-YGKNGVV---------IP 68

Query: 63 THIAITRGGGRGGGGGGRGNGAAG 86
           HI I  GGG G GGGGRG    G
Sbjct: 69 MHIVIGLGGGGGSGGGGRGGSGGG 81

The following BLAST results are available for this feature:

BLAST of CsGy5G025770 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy5G025770 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52711.2	5.71e-70	100.00	hypothetical protein Csa_008218, partial [Cucumis sativus]	[more]
KGN52185.1	3.36e-51	82.46	hypothetical protein Csa_009431 [Cucumis sativus]	[more]
XP_008446753.1	1.09e-45	77.97	PREDICTED: transformer-2 protein homolog alpha-like [Cucumis melo]	[more]
XP_022987217.1	1.93e-09	53.57	glycine-rich protein DOT1-like [Cucurbita maxima]	[more]
XP_023550250.1	1.32e-06	42.34	glycine-rich RNA-binding protein 2-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy5G025770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWM3	4.30e-69	98.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613630 PE=4 SV=1	[more]
A0A0A0KRC8	1.63e-51	82.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613620 PE=4 SV=1	[more]
A0A1S3BFU5	5.29e-46	77.97	transformer-2 protein homolog alpha-like OS=Cucumis melo OX=3656 GN=LOC103489385...	[more]
A0A6J1J9S2	9.36e-10	53.57	glycine-rich protein DOT1-like OS=Cucurbita maxima OX=3661 GN=LOC111484806 PE=4 ...	[more]

BLAST of CsGy5G025770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G025770.2	CsGy5G025770.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0036297	interstrand cross-link repair
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
cellular_component	GO:0005634	nucleus
molecular_function	GO:0008409	5'-3' exonuclease activity
molecular_function	GO:0017108	5'-flap endonuclease activity
molecular_function	GO:0070336	flap-structured DNA binding
molecular_function	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
molecular_function	GO:0004528	phosphodiesterase I activity
molecular_function	GO:0008270	zinc ion binding