CsGy5G025520 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy5G025520
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr5: 29715587 .. 29715756 (-)
RNA-Seq Expression	CsGy5G025520
Synteny	CsGy5G025520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGGGAAATAATCAAAGGGGTCGTGGATCTTTAAGCAAAGAACAGAAAGCGATAAGCAATAAAGACATAGCTGAAGACAAAGTCGAGCTGTGGTTGAGCAAGTCGATTGTTGAAGGTAGAGGAAGAAAGAGAATCGGTGAGGCTTATGGGTGGGTTTTGTCTGCTAA

mRNA sequence

ATGTGGGGAAATAATCAAAGGGGTCGTGGATCTTTAAGCAAAGAACAGAAAGCGATAAGCAATAAAGACATAGCTGAAGACAAAGTCGAGCTGTGGTTGAGCAAGTCGATTGTTGAAGGTAGAGGAAGAAAGAGAATCGGTGAGGCTTATGGGTGGGTTTTGTCTGCTAA

Coding sequence (CDS)

ATGTGGGGAAATAATCAAAGGGGTCGTGGATCTTTAAGCAAAGAACAGAAAGCGATAAGCAATAAAGACATAGCTGAAGACAAAGTCGAGCTGTGGTTGAGCAAGTCGATTGTTGAAGGTAGAGGAAGAAAGAGAATCGGTGAGGCTTATGGGTGGGTTTTGTCTGCTAA

Protein sequence

MWGNNQRGRGSLSKEQKAISNKDIAEDKVELWLSKSIVEGRGRKRIGEAYGWVLSAX

Homology

[Close]

BLAST of CsGy5G025520 vs. NCBI nr
Match: KAE8648809.1 (hypothetical protein Csa_009267, partial [Cucumis sativus])

HSP 1 Score: 115 bits (288), Expect = 2.50e-32
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MWGNNQRGRGSLSKEQKAISNKDIAEDKVELWLSKSIVEGRGRKRIGEAYGWVLSA 56
          MWGNNQRGRGSLSKEQKAISNKDIAEDKVELWLSKSIVEGRGRKRIGEAYGWVLSA
Sbjct: 1  MWGNNQRGRGSLSKEQKAISNKDIAEDKVELWLSKSIVEGRGRKRIGEAYGWVLSA 56

[Close]

BLAST of CsGy5G025520 vs. ExPASy TrEMBL
Match: A0A0A0KUP8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G612920 PE=4 SV=1)

HSP 1 Score: 115 bits (288), Expect = 1.41e-32
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MWGNNQRGRGSLSKEQKAISNKDIAEDKVELWLSKSIVEGRGRKRIGEAYGWVLSA 56
          MWGNNQRGRGSLSKEQKAISNKDIAEDKVELWLSKSIVEGRGRKRIGEAYGWVLSA
Sbjct: 1  MWGNNQRGRGSLSKEQKAISNKDIAEDKVELWLSKSIVEGRGRKRIGEAYGWVLSA 56

The following BLAST results are available for this feature:

BLAST of CsGy5G025520 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy5G025520 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648809.1	2.50e-32	100.00	hypothetical protein Csa_009267, partial [Cucumis sativus]	[more]

BLAST of CsGy5G025520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUP8	1.41e-32	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G612920 PE=4 SV=1	[more]

BLAST of CsGy5G025520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G025520.2	CsGy5G025520.2	mRNA