CsGy5G023810 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy5G023810
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionPLASMODESMATA CALLOSE-BINDING PROTEIN 3
LocationGy14Chr5: 28613828 .. 28615976 (+)
RNA-Seq ExpressionCsGy5G023810
SyntenyCsGy5G023810
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATGTGAGTGAAGGAAGAGGGTGGTGGTGACACCCGCTGGTGAGCGTAGGACCAAAGGCGGCAGCAGCAGCAGCAGCAAGCACCAAACCTACCCAGTCTTAACCATCTGGTTTGGTTAAGTGAACGTGTGGTTAGGTTGTGATAACCCACGGTGGGTTTAAGACCGTTTGAGGGAATTTTACACAAACGGTCAAATACAACACATAAAGCTTTCTATTCAGCTCATTTTCCCACACCACATACAAACTTTATATATCTTTCATATTTAATTCACTTCAAATGAATTGCGTTAAATAAGTAAAATAAAAAAAAGCCTAAAACTTAGCCTACTCGTGCTCGTATATAATAATGTCCCTTCCTTTCTAACGATCTTTAATTTCTGTCAACAAAAATACTCCGAACTTCTTTCTTCACCATTCTCTCTTGTGTACCTCTCACTTTCTTTCACTCCAGTGAAATCTGAGCTTTCTTCTTTGGGGTTTTCAAGGCTTTGAGCTTGAGTGCTCATTCCATTCATGGCTGTTTTTGTGTTCTTTGTGTTTTTTCTTGCGCTGACTGGTCGATCTTGTAAGTTTCAGTTTCTCCCGGGCTTTTTCTTGAGATTTTCCTTTATGGGGTTTTTGTTAATTTTGGGTTTCTCCATTTTCAGATGCGAACTATTGTTTGTGTAGAGATGGGGTTGGCCAATCAGCCCTTCAAAAGGCACTGGACTACGCCTGTGGAGCTGGAGCTGACTGTTCTTCAATCCTCTCCAGTGGCGCTTGTTTTCAGCCCAACACTGTTAAAGATCACTGCAATTACGCTGTCAACAGTTATTTCCAGCGAAAAGGGCAAGTCCAAGGAAGCTGTGACTTCAACGGTGCCGCCACGCCCAGCGTTACCCTCACTGCCTGTAAGATGTTTTCCTCTGTCTTCACTATTGTTTCTTATCCTCTATTTCACTGGATTTATCTTTCTTCATTGTGGGTTTTTTTTTTTTTTTTTTGCAGCTGCGCCTTCTGGTTGCGTCTATCCTTCTAGCCCCAGGTACTTTTCTAAGCTTTATGTCGCTGTAGCTTTCATATTTAATTAGATTTGGCTTAATTTCAATGTCGCCATTTTTGACTAACATCAGAGATTTGTCGGTGATGGGTTTGCGTTTCAATGCCGCCGTCTGGGTTTTGATTTTCCATTTTAGAATAATAAAATTAGGTGGTGGTGTAATTATTAGATCTAGTGAACTTCAAATGAACTTACTGGCTTGAACCACTCCCTTGTGGTACCGTGAGCTGTCCATGATGATTATATTTTTTTCCTTGTCAACTCTGGCTTGTTGTCGTCTTGTTCATCAGATCTCTCGATTCCCTTTCCACCTGTTATCGACACGTCGTTTGCTGTTGAACTTAAGTTTAAATCGTGCTTGTATTACAATTATTTATCTTTCTTGTCTCACTGGTGTTTATTTTTGCTTATATTTAAGCAATGCGGGAACATCGCCGACGAACGGTGGTGGAACTACGCCGACGATGACACCAGGGACGCCGTCGACGACGAATCCAGGAATGACACCGACGGTGTTCGGTAACGGAATCAGCCCGAGTGGGAGCGGGAGCGGATTCAACGACGGTAGCGGCGGCGTGGGTTTCAATGAAAATAGGAACTTGCTTTTGGCAGTGGGGCTAAGTCTGTGGCTTTCCGTATTGTTTCTCTGGGGATGATGAAGATGGAGGATCGGATGGTGGATCTCGATGAATGGTTGAGATCTTGCCACATATGTAGGGGGTTACTTTTGACAATTGGATGTGGAAGGAAGAATCTAGAGGCAAACCCCACTAGGGTTTTTTTCTTGTTAATTTTTTGTTATTTCTAATGTTATTCCATTAAAGAAAAAGAAAAAAAAAATGGAGAGGATGTTTGATGATTCCTTTTTTGATGAATGGATGAATGGAGGAAGAAGAAGGAAGGAGTGGAATCTTTGATGAATGATTTTTTGGGGAGGGGATGGTGTTGTTGTATATTTGCTAGAGTTTATTTAATTTCTAATTTTGTGTTGTTGTAACATTCTCCTCCATTCACTTTCATTAATCTTTACTTTCCATCCATTTGGAATGATGCATTTAATAACTATTTGAATATTTATTATTACAAAATTACTAGTAGAAAAATGAGC

mRNA sequence

CATGTGAGTGAAGGAAGAGGGTGGTGGTGACACCCGCTGGTGAGCGTAGGACCAAAGGCGGCAGCAGCAGCAGCAGCAAGCACCAAACCTACCCAGTCTTAACCATCTGGTTTGGTTAAGTGAACGTGTGGTTAGGTTGTGATAACCCACGGTGGGTTTAAGACCGTTTGAGGGAATTTTACACAAACGGTCAAATACAACACATAAAGCTTTCTATTCAGCTCATTTTCCCACACCACATACAAACTTTATATATCTTTCATATTTAATTCACTTCAAATGAATTGCGTTAAATAAGTAAAATAAAAAAAAGCCTAAAACTTAGCCTACTCGTGCTCGTATATAATAATGTCCCTTCCTTTCTAACGATCTTTAATTTCTGTCAACAAAAATACTCCGAACTTCTTTCTTCACCATTCTCTCTTGTGTACCTCTCACTTTCTTTCACTCCAGTGAAATCTGAGCTTTCTTCTTTGGGGTTTTCAAGGCTTTGAGCTTGAGTGCTCATTCCATTCATGGCTGTTTTTGTGTTCTTTGTGTTTTTTCTTGCGCTGACTGGTCGATCTTATGCGAACTATTGTTTGTGTAGAGATGGGGTTGGCCAATCAGCCCTTCAAAAGGCACTGGACTACGCCTGTGGAGCTGGAGCTGACTGTTCTTCAATCCTCTCCAGTGGCGCTTGTTTTCAGCCCAACACTGTTAAAGATCACTGCAATTACGCTGTCAACAGTTATTTCCAGCGAAAAGGGCAAGTCCAAGGAAGCTGTGACTTCAACGGTGCCGCCACGCCCAGCGTTACCCTCACTGCCTGTAAGATGTTTTCCTCTGTCTTCACTATTGTTTCTTATCCTCTATTTCACTGGATTTATCTTTCTTCATTGTGGGTTTTTTTTTTTTTTTTTTGCAGCTGCGCCTTCTGGTTGCGTCTATCCTTCTAGCCCCAGCAATGCGGGAACATCGCCGACGAACGGTGGTGGAACTACGCCGACGATGACACCAGGGACGCCGTCGACGACGAATCCAGGAATGACACCGACGGTGTTCGGTAACGGAATCAGCCCGAGTGGGAGCGGGAGCGGATTCAACGACGGTAGCGGCGGCGTGGGTTTCAATGAAAATAGGAACTTGCTTTTGGCAGTGGGGCTAAGTCTGTGGCTTTCCGTATTGTTTCTCTGGGGATGATGAAGATGGAGGATCGGATGGTGGATCTCGATGAATGGTTGAGATCTTGCCACATATGTAGGGGGTTACTTTTGACAATTGGATGTGGAAGGAAGAATCTAGAGGCAAACCCCACTAGGGTTTTTTTCTTGTTAATTTTTTGTTATTTCTAATGTTATTCCATTAAAGAAAAAGAAAAAAAAAATGGAGAGGATGTTTGATGATTCCTTTTTTGATGAATGGATGAATGGAGGAAGAAGAAGGAAGGAGTGGAATCTTTGATGAATGATTTTTTGGGGAGGGGATGGTGTTGTTGTATATTTGCTAGAGTTTATTTAATTTCTAATTTTGTGTTGTTGTAACATTCTCCTCCATTCACTTTCATTAATCTTTACTTTCCATCCATTTGGAATGATGCATTTAATAACTATTTGAATATTTATTATTACAAAATTACTAGTAGAAAAATGAGC

Coding sequence (CDS)

ATGCGAACTATTGTTTGTGTAGAGATGGGGTTGGCCAATCAGCCCTTCAAAAGGCACTGGACTACGCCTGTGGAGCTGGAGCTGACTGTTCTTCAATCCTCTCCAGTGGCGCTTGTTTTCAGCCCAACACTGTTAAAGATCACTGCAATTACGCTGTCAACAGTTATTTCCAGCGAAAAGGGCAAGTCCAAGGAAGCTGTGACTTCAACGGTGCCGCCACGCCCAGCGTTACCCTCACTGCCTGTAAGATGTTTTCCTCTGTCTTCACTATTGTTTCTTATCCTCTATTTCACTGGATTTATCTTTCTTCATTGTGGGTTTTTTTTTTTTTTTTTTGCAGCTGCGCCTTCTGGTTGCGTCTATCCTTCTAGCCCCAGCAATGCGGGAACATCGCCGACGAACGGTGGTGGAACTACGCCGACGATGACACCAGGGACGCCGTCGACGACGAATCCAGGAATGACACCGACGGTGTTCGGTAACGGAATCAGCCCGAGTGGGAGCGGGAGCGGATTCAACGACGGTAGCGGCGGCGTGGGTTTCAATGAAAATAGGAACTTGCTTTTGGCAGTGGGGCTAAGTCTGTGGCTTTCCGTATTGTTTCTCTGGGGATGA

Protein sequence

MRTIVCVEMGLANQPFKRHWTTPVELELTVLQSSPVALVFSPTLLKITAITLSTVISSEKGKSKEAVTSTVPPRPALPSLPVRCFPLSSLLFLILYFTGFIFLHCGFFFFFFAAAPSGCVYPSSPSNAGTSPTNGGGTTPTMTPGTPSTTNPGMTPTVFGNGISPSGSGSGFNDGSGGVGFNENRNLLLAVGLSLWLSVLFLWG*
Homology
BLAST of CsGy5G023810 vs. NCBI nr
Match: XP_004135148.1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Cucumis sativus])

HSP 1 Score: 179 bits (455), Expect = 1.68e-53
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 0

Query: 113 AAAPSGCVYPSSPSNAGTSPTNGGGTTPTMTPGTPSTTNPGMTPTVFGNGISPSGSGSGF 172
           A+APSGCVYPSSPSNAGTSPTNGGGTTPTMTPGTPSTTNPGMTPTVFGNGISPSGSGSGF
Sbjct: 98  ASAPSGCVYPSSPSNAGTSPTNGGGTTPTMTPGTPSTTNPGMTPTVFGNGISPSGSGSGF 157

Query: 173 NDGSGGVGFNENRNLLLAVGLSLWLSVLFLWG 204
           NDGSGGVGFNENRNLLLAVGLSLWLSVLFLWG
Sbjct: 158 NDGSGGVGFNENRNLLLAVGLSLWLSVLFLWG 189

BLAST of CsGy5G023810 vs. NCBI nr
Match: XP_038892199.1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Benincasa hispida])

HSP 1 Score: 171 bits (434), Expect = 2.54e-50
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 0

Query: 113 AAAPSGCVYPSSPSNAGTSPTNGGGTTPTMTPGTPSTTNPGMTPTVFGNGISPSGSGSGF 172
           A+  SGCVYPSSPSNAGTSPTN GGTTPTMTPGTPSTTNPGMTPTVFGNGISPSGSGSGF
Sbjct: 98  ASVTSGCVYPSSPSNAGTSPTNSGGTTPTMTPGTPSTTNPGMTPTVFGNGISPSGSGSGF 157

Query: 173 NDGSGGVGFNENRNLLLAVGLSLWLSVLFLWG 204
           NDGSGGVGFNENRNLLLAVGL+LWLSVLFLWG
Sbjct: 158 NDGSGGVGFNENRNLLLAVGLTLWLSVLFLWG 189

BLAST of CsGy5G023810 vs. NCBI nr
Match: XP_008446432.1 (PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Cucumis melo] >KAA0034470.1 PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Cucumis melo var. makuwa] >TYK09023.1 PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Cucumis melo var. makuwa])

HSP 1 Score: 163 bits (413), Expect = 4.57e-47
Identity = 86/98 (87.76%), Postives = 89/98 (90.82%), Query Frame = 0

Query: 113 AAAPSGCVYPSSPSNAGTSPTNGG------GTTPTMTPGTPSTTNPGMTPTVFGNGISPS 172
           A+ PSGCVYPSSPSNAGTSPTNGG      GTTPTMTPGTPSTT PGMTPTVFGNGISPS
Sbjct: 98  ASVPSGCVYPSSPSNAGTSPTNGGTTPTNGGTTPTMTPGTPSTTTPGMTPTVFGNGISPS 157

Query: 173 GSGSGFNDGSGGVGFNENRNLLLAVGLSLWLSVLFLWG 204
           GSG+GFNDGSG VGFNENRNLLLAVGL+LWLSVLFLWG
Sbjct: 158 GSGTGFNDGSGCVGFNENRNLLLAVGLTLWLSVLFLWG 195

BLAST of CsGy5G023810 vs. NCBI nr
Match: KAE8648763.1 (hypothetical protein Csa_008532 [Cucumis sativus])

HSP 1 Score: 158 bits (400), Expect = 2.95e-46
Identity = 85/91 (93.41%), Postives = 86/91 (94.51%), Query Frame = 0

Query: 1  MRTIVCVEMGLANQPFKRHWTTPVELELTVLQSSPVALVFSPTLLKITAITLSTVISSEK 60
          MRTIVCVEMGLANQPFKRHWTTPVELELTVLQSSPVALVFSPTLLKITAITLSTVISSEK
Sbjct: 1  MRTIVCVEMGLANQPFKRHWTTPVELELTVLQSSPVALVFSPTLLKITAITLSTVISSEK 60

Query: 61 GKSKEAVTSTVPPRPALPSLPVRCFPLSSLL 91
          GKSKEAVTSTVPPRPALPSLP+R    S LL
Sbjct: 61 GKSKEAVTSTVPPRPALPSLPLRLLVASILL 91

BLAST of CsGy5G023810 vs. NCBI nr
Match: XP_022945109.1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Cucurbita moschata])

HSP 1 Score: 135 bits (341), Expect = 2.12e-36
Identity = 72/88 (81.82%), Postives = 76/88 (86.36%), Query Frame = 0

Query: 113 AAAPSGCVYPSSPSNAGTSPTNGGGTTPTMTPGTPSTTNPGMTPTVFGNGISPSGSGSGF 172
           A+ PSGCVYPSSPSNAGTSPTN GGTTP        TTNPGMTPTVFGNGISPSGSG+GF
Sbjct: 98  ASVPSGCVYPSSPSNAGTSPTNSGGTTP-------GTTNPGMTPTVFGNGISPSGSGAGF 157

Query: 173 NDGSGGVGFNENRNLLLAVGLSLWLSVL 200
           NDGSGGVGFNE  NLLL+VGL+LWLSVL
Sbjct: 158 NDGSGGVGFNEKMNLLLSVGLTLWLSVL 178

BLAST of CsGy5G023810 vs. ExPASy TrEMBL
Match: A0A0A0KQT6 (X8 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G606660 PE=4 SV=1)

HSP 1 Score: 179 bits (455), Expect = 8.15e-54
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 0

Query: 113 AAAPSGCVYPSSPSNAGTSPTNGGGTTPTMTPGTPSTTNPGMTPTVFGNGISPSGSGSGF 172
           A+APSGCVYPSSPSNAGTSPTNGGGTTPTMTPGTPSTTNPGMTPTVFGNGISPSGSGSGF
Sbjct: 98  ASAPSGCVYPSSPSNAGTSPTNGGGTTPTMTPGTPSTTNPGMTPTVFGNGISPSGSGSGF 157

Query: 173 NDGSGGVGFNENRNLLLAVGLSLWLSVLFLWG 204
           NDGSGGVGFNENRNLLLAVGLSLWLSVLFLWG
Sbjct: 158 NDGSGGVGFNENRNLLLAVGLSLWLSVLFLWG 189

BLAST of CsGy5G023810 vs. ExPASy TrEMBL
Match: A0A5A7SU26 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00090 PE=4 SV=1)

HSP 1 Score: 163 bits (413), Expect = 2.21e-47
Identity = 86/98 (87.76%), Postives = 89/98 (90.82%), Query Frame = 0

Query: 113 AAAPSGCVYPSSPSNAGTSPTNGG------GTTPTMTPGTPSTTNPGMTPTVFGNGISPS 172
           A+ PSGCVYPSSPSNAGTSPTNGG      GTTPTMTPGTPSTT PGMTPTVFGNGISPS
Sbjct: 98  ASVPSGCVYPSSPSNAGTSPTNGGTTPTNGGTTPTMTPGTPSTTTPGMTPTVFGNGISPS 157

Query: 173 GSGSGFNDGSGGVGFNENRNLLLAVGLSLWLSVLFLWG 204
           GSG+GFNDGSG VGFNENRNLLLAVGL+LWLSVLFLWG
Sbjct: 158 GSGTGFNDGSGCVGFNENRNLLLAVGLTLWLSVLFLWG 195

BLAST of CsGy5G023810 vs. ExPASy TrEMBL
Match: A0A1S3BF20 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Cucumis melo OX=3656 GN=LOC103489181 PE=4 SV=1)

HSP 1 Score: 163 bits (413), Expect = 2.21e-47
Identity = 86/98 (87.76%), Postives = 89/98 (90.82%), Query Frame = 0

Query: 113 AAAPSGCVYPSSPSNAGTSPTNGG------GTTPTMTPGTPSTTNPGMTPTVFGNGISPS 172
           A+ PSGCVYPSSPSNAGTSPTNGG      GTTPTMTPGTPSTT PGMTPTVFGNGISPS
Sbjct: 98  ASVPSGCVYPSSPSNAGTSPTNGGTTPTNGGTTPTMTPGTPSTTTPGMTPTVFGNGISPS 157

Query: 173 GSGSGFNDGSGGVGFNENRNLLLAVGLSLWLSVLFLWG 204
           GSG+GFNDGSG VGFNENRNLLLAVGL+LWLSVLFLWG
Sbjct: 158 GSGTGFNDGSGCVGFNENRNLLLAVGLTLWLSVLFLWG 195

BLAST of CsGy5G023810 vs. ExPASy TrEMBL
Match: A0A6J1G024 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Cucurbita moschata OX=3662 GN=LOC111449448 PE=4 SV=1)

HSP 1 Score: 135 bits (341), Expect = 1.03e-36
Identity = 72/88 (81.82%), Postives = 76/88 (86.36%), Query Frame = 0

Query: 113 AAAPSGCVYPSSPSNAGTSPTNGGGTTPTMTPGTPSTTNPGMTPTVFGNGISPSGSGSGF 172
           A+ PSGCVYPSSPSNAGTSPTN GGTTP        TTNPGMTPTVFGNGISPSGSG+GF
Sbjct: 98  ASVPSGCVYPSSPSNAGTSPTNSGGTTP-------GTTNPGMTPTVFGNGISPSGSGAGF 157

Query: 173 NDGSGGVGFNENRNLLLAVGLSLWLSVL 200
           NDGSGGVGFNE  NLLL+VGL+LWLSVL
Sbjct: 158 NDGSGGVGFNEKMNLLLSVGLTLWLSVL 178

BLAST of CsGy5G023810 vs. ExPASy TrEMBL
Match: A0A6J1GWB4 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like OS=Cucurbita moschata OX=3662 GN=LOC111458119 PE=4 SV=1)

HSP 1 Score: 135 bits (340), Expect = 2.36e-36
Identity = 73/101 (72.28%), Postives = 83/101 (82.18%), Query Frame = 0

Query: 113 AAAPSGCVYPSSPSNAGTSPTNGGGTTPTMTP---------GTPSTTNPGMTPTVFGNGI 172
           A  PSGCVYPSSPSNAGT+PT+  GTTPTMTP         GTPS+T+PGMTP+VF NGI
Sbjct: 98  ATVPSGCVYPSSPSNAGTTPTSPSGTTPTMTPPGMPTMTPPGTPSSTSPGMTPSVFNNGI 157

Query: 173 SPSGSGSGFNDGSGGVGFNENRNLLLAVGLSLWLSVLFLWG 204
           SPSGSG GFNDGSG VGF++NRNL LAVG +LWL+V+FLWG
Sbjct: 158 SPSGSG-GFNDGSGSVGFSDNRNLFLAVGSTLWLAVVFLWG 197

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_004135148.11.68e-5398.91PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Cucumis sativus][more]
XP_038892199.12.54e-5094.57PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Benincasa hispida][more]
XP_008446432.14.57e-4787.76PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Cucumis melo] >KAA0034470.1 ... [more]
KAE8648763.12.95e-4693.41hypothetical protein Csa_008532 [Cucumis sativus][more]
XP_022945109.12.12e-3681.82PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
A0A0A0KQT68.15e-5498.91X8 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G606660 PE=4 SV=... [more]
A0A5A7SU262.21e-4787.76PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A1S3BF202.21e-4787.76PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Cucumis melo OX=3656 GN=LOC103489181 ... [more]
A0A6J1G0241.03e-3681.82PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Cucurbita moschata OX=3662 GN=LOC1114... [more]
A0A6J1GWB42.36e-3672.28PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like OS=Cucurbita moschata OX=3662 GN=LO... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 124..160

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy5G023810.2CsGy5G023810.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009506 plasmodesma