CsGy5G023335 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy5G023335
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	50S ribosomal protein L18
Location	Gy14Chr5: 28356990 .. 28358220 (-)
RNA-Seq Expression	CsGy5G023335
Synteny	CsGy5G023335

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTCTCTACTTCTAAATACTTCAAATTTAAAAAAAGTTCATGGTGGAATGGCTTTTCAAAATGTTTCTGGTTTGCTACTGAAGACTTCTATGCCATTCGGGTTGCAGTCAAAACCATTTGACTTTCGCAGCTTGAAAACTAAACGTAAGTGAAGCAGTACATGCATTAGCTCACAATCTGTATGGTATTGATAATCAATAAATCATTTCTTGGATGGAATAAGTACCAAATACGTCAAGCAGTTGCTTTTGCCTTATAATGAGTTATACATTCTGTGTAGATTGCGATGTGAAGCCGTTGACGATCCAAGCAAGAGGAAACTCTAAAACAGAAAGTGCAAAAGTTAGAAATAGGAGGATGCAGAAAAAGGTGCGTAATCATCCTTCACTTCTCCTCAGTTTATTCTCTTGAAGGGGATGGTTTTTGTCGAGGGAGGAGATTGAGGAAGGTTAGGAATTTGATAACGGGGCAGCGCAGGGTATGTAGAGACCAAGAACCAAAAAATCCTATTGCTTCAATTGCAATGAATGCACAGTACGATGTTTGTTTTTTTAAGTACAAGTTGGGATGGGCTTCCGTTGGCTTATGACAGTTGCTTAATACACAATAAAATGTCTTACATAGGTAGAAGTTGCCTAAAAGAAATTAGCAGTTCAGTCTCATAACTTCCAAATTTGTGTCAAATAATTTAATTGTATAAGTTCGAAAGTTTAAATTTTATTGTTAGGAATTCCAATTTCTACAACTATTATAAGTTGAGGGATCCAAATTTAACACTTGTTGCTCATAGTTATAACCAATTTCTCATTACATTTGATGGTTTTCAACGGGAAGCAGTATAATGGCACTCCTACAAGACCAAGGCTTTCAGTGTTTTGTTCCGATAAACAGTTGTATGCAATGTTGGTTGACGATCAGAATAAGAAGTGTTTGTTTTATGGAAGCACCTTACAAAAATCCATGCGTCCAACTCCCTCATGCACCACCATCGTAAGTTTTTATTCTTGAAATCTGACTTGAAATTAAGACCACAAAATCTAAGCTTCCTTTTCTTTTCTTTGTTGGTGATTACAGGAAGCTGCTCAACATGTTGGTGAAGAACTTGTCAAAGTATGCATGGATTTGAATATACACGAAATATCATTGTACGATCGAAATGGGTTTGCTTGCGGAGAGAAGATGCAAGCCTTCGAAATTGCAATTTCGCGCTACGGGTTCTTACAATAG

mRNA sequence

ATGTCCTCTCTACTTCTAAATACTTCAAATTTAAAAAAAGTTCATGGTGGAATGGCTTTTCAAAATGTTTCTGGTTTGCTACTGAAGACTTCTATGCCATTCGGGTTGCAGTCAAAACCATTTGACTTTCGCAGCTTGAAAACTAAACATTGCGATGTGAAGCCGTTGACGATCCAAGCAAGAGGAAACTCTAAAACAGAAAGTGCAAAAGTTAGAAATAGGAGGATGCAGAAAAAGTATAATGGCACTCCTACAAGACCAAGGCTTTCAGTGTTTTGTTCCGATAAACAGTTGTATGCAATGTTGGTTGACGATCAGAATAAGAAGTGTTTGTTTTATGGAAGCACCTTACAAAAATCCATGCGTCCAACTCCCTCATGCACCACCATCGAAGCTGCTCAACATGTTGGTGAAGAACTTGTCAAAGTATGCATGGATTTGAATATACACGAAATATCATTGTACGATCGAAATGGGTTTGCTTGCGGAGAGAAGATGCAAGCCTTCGAAATTGCAATTTCGCGCTACGGGTTCTTACAATAG

Coding sequence (CDS)

ATGTCCTCTCTACTTCTAAATACTTCAAATTTAAAAAAAGTTCATGGTGGAATGGCTTTTCAAAATGTTTCTGGTTTGCTACTGAAGACTTCTATGCCATTCGGGTTGCAGTCAAAACCATTTGACTTTCGCAGCTTGAAAACTAAACATTGCGATGTGAAGCCGTTGACGATCCAAGCAAGAGGAAACTCTAAAACAGAAAGTGCAAAAGTTAGAAATAGGAGGATGCAGAAAAAGTATAATGGCACTCCTACAAGACCAAGGCTTTCAGTGTTTTGTTCCGATAAACAGTTGTATGCAATGTTGGTTGACGATCAGAATAAGAAGTGTTTGTTTTATGGAAGCACCTTACAAAAATCCATGCGTCCAACTCCCTCATGCACCACCATCGAAGCTGCTCAACATGTTGGTGAAGAACTTGTCAAAGTATGCATGGATTTGAATATACACGAAATATCATTGTACGATCGAAATGGGTTTGCTTGCGGAGAGAAGATGCAAGCCTTCGAAATTGCAATTTCGCGCTACGGGTTCTTACAATAG

Protein sequence

MSSLLLNTSNLKKVHGGMAFQNVSGLLLKTSMPFGLQSKPFDFRSLKTKHCDVKPLTIQARGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPTPSCTTIEAAQHVGEELVKVCMDLNIHEISLYDRNGFACGEKMQAFEIAISRYGFLQ*

Homology

[Close]

BLAST of CsGy5G023335 vs. ExPASy Swiss-Prot
Match: P82195 (50S ribosomal protein L18, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL18 PE=1 SV=3)

HSP 1 Score: 82.8 bits (203), Expect = 4.4e-15
Identity = 48/141 (34.04%), Postives = 79/141 (56.03%), Query Frame = 0


Query: 45  SLKTKHCDVKPLT---IQARGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYAM 104
           SL  K  + +P T   IQA+ +++ E    R+ R++KK  GTP RPRL VF S+K LY  
Sbjct: 26  SLPPKFVNFRPQTLPLIQAKAHTRREDRTARHVRIRKKVEGTPERPRLCVFRSNKHLYVQ 85

Query: 105 LVDDQNKKCLFYGSTLQKSMRPT---PSCTTIEAAQHVGEELVKVCMDLNIHEISLYDRN 164
           ++DD     L   ST+QK++       +  T+E AQ +GE + K C++  I +++ +DR 
Sbjct: 86  VIDDTKMHTLAAASTMQKAISENIDYSAGPTVEVAQKIGEMIAKSCLEKGITKVA-FDRG 145

Query: 165 GFACGEKMQAFEIAISRYGFL 180
           G+    +++A   A   +G +
Sbjct: 146 GYPYHGRVKALADAAREHGLV 165

[Close]

BLAST of CsGy5G023335 vs. ExPASy Swiss-Prot
Match: Q9SX68 (50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.8e-14
Identity = 46/146 (31.51%), Postives = 76/146 (52.05%), Query Frame = 0


Query: 35  GLQSKPFDFRSLKTKHCDVKPLTIQARGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCS 94
           GLQ +    +   +     + + ++A+  + +E    R+ R++KK NGT  RPRL VF S
Sbjct: 23  GLQHRAVFLKPWSSSSLQSRSMVVEAKTKTSSEDRIARHSRIRKKVNGTTERPRLCVFRS 82

Query: 95  DKQLYAMLVDDQNKKCLFYGSTLQKSMRPT---PSCTTIEAAQHVGEELVKVCMDLNIHE 154
           +K LY  ++DD     L   ST QK +       S  TIE A+ VGE + K C++  I +
Sbjct: 83  NKHLYVQVIDDTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITK 142

Query: 155 ISLYDRNGFACGEKMQAFEIAISRYG 178
           ++ +DR G+    +++A   A   +G
Sbjct: 143 VA-FDRGGYPYHGRIEALAAAAREHG 167

[Close]

BLAST of CsGy5G023335 vs. ExPASy Swiss-Prot
Match: A9FGF8 (50S ribosomal protein L18 OS=Sorangium cellulosum (strain So ce56) OX=448385 GN=rplR PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-12
Identity = 40/107 (37.38%), Postives = 63/107 (58.88%), Query Frame = 0


Query: 72  RNRRMQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPT-PSCTTI 131
           R  R++KK  GTP RPRLSVF S K +YA ++DD + K L + STL K ++ +      +
Sbjct: 11  RKLRIRKKVEGTPERPRLSVFRSSKHIYAQVIDDVSGKTLAHASTLSKDLKGSLDEDNKV 70

Query: 132 EAAQHVGEELVKVCMDLNIHEISLYDRNGFACGEKMQAFEIAISRYG 178
           EAA+ VG  + ++C +  I ++ ++DRNG+    ++ A   A    G
Sbjct: 71  EAAKKVGALIARICKERQIDKV-VFDRNGYLYHGRVSALAQAAREAG 116

[Close]

BLAST of CsGy5G023335 vs. ExPASy Swiss-Prot
Match: P04453 (50S ribosomal protein L18 OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) OX=340047 GN=rplR PE=3 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 4.5e-12
Identity = 42/106 (39.62%), Postives = 66/106 (62.26%), Query Frame = 0


Query: 64  SKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRP 123
           +KTE+ K R+ R++ K  GT  RPRL+VF S+   YA ++DD     L   STL+  ++ 
Sbjct: 4   TKTEARKRRHFRVRHKVVGTAERPRLNVFKSNTNFYAQIIDDTKGVTLVSASTLKMDLK- 63

Query: 124 TPSCTTIEAAQHVGEELVKVCMDLNIHEISLYDRNGFACGEKMQAF 170
             S + I+AA+ V EEL K  +  NI+++ ++DRNG+    K++AF
Sbjct: 64  --SKSNIQAAEKVAEELTKKALAANINQV-VFDRNGYLYHGKIKAF 105

[Close]

BLAST of CsGy5G023335 vs. ExPASy Swiss-Prot
Match: Q8SAY0 (50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.9e-12
Identity = 41/109 (37.61%), Postives = 63/109 (57.80%), Query Frame = 0


Query: 72  RNRRMQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPT---PSCT 131
           R+ R++KK +GT  RPRLSVF S+K LYA ++DD     L   ST+ KS+       +  
Sbjct: 60  RHVRLRKKVSGTTERPRLSVFRSNKHLYAQVIDDTKSCTLVSASTMHKSLSKDLEYSAGP 119

Query: 132 TIEAAQHVGEELVKVCMDLNIHEISLYDRNGFACGEKMQAFEIAISRYG 178
           T+E AQ +GE + K C++  I ++ ++DR GF    +++A   A    G
Sbjct: 120 TVEVAQKIGEVIAKSCLEKGITKV-VFDRGGFLYHGRIKALADAARENG 167

[Close]

BLAST of CsGy5G023335 vs. NCBI nr
Match: XP_004135173.1 (uncharacterized protein LOC101218434 [Cucumis sativus] >KGN51925.1 hypothetical protein Csa_008392 [Cucumis sativus])

HSP 1 Score: 362 bits (930), Expect = 2.57e-126
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0


Query: 1   MSSLLLNTSNLKKVHGGMAFQNVSGLLLKTSMPFGLQSKPFDFRSLKTKHCDVKPLTIQA 60
           MSSLLLNTSNLKKVHGGMAFQNVSGLLLKTSMPFGLQSKPFDFRSLKTKHCDVKPLTIQA
Sbjct: 1   MSSLLLNTSNLKKVHGGMAFQNVSGLLLKTSMPFGLQSKPFDFRSLKTKHCDVKPLTIQA 60

Query: 61  RGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120
           RGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS
Sbjct: 61  RGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120

Query: 121 MRPTPSCTTIEAAQHVGEELVKVCMDLNIHEISLYDRNGFACGEKMQAFEIAISRYGFLQ 180
           MRPTPSCTTIEAAQHVGEELVKVCMDLNIHEISLYDRNGFACGEKMQAFEIAISRYGFLQ
Sbjct: 121 MRPTPSCTTIEAAQHVGEELVKVCMDLNIHEISLYDRNGFACGEKMQAFEIAISRYGFLQ 180

[Close]

BLAST of CsGy5G023335 vs. NCBI nr
Match: XP_008446359.1 (PREDICTED: 50S ribosomal protein L18 [Cucumis melo] >XP_008446360.1 PREDICTED: 50S ribosomal protein L18 [Cucumis melo] >XP_008446361.1 PREDICTED: 50S ribosomal protein L18 [Cucumis melo] >TYK17710.1 50S ribosomal protein L18 [Cucumis melo var. makuwa])

HSP 1 Score: 339 bits (869), Expect = 5.33e-117
Identity = 171/180 (95.00%), Postives = 173/180 (96.11%), Query Frame = 0


Query: 1   MSSLLLNTSNLKKVHGGMAFQNVSGLLLKTSMPFGLQSKPFDFRSLKTKHCDVKPLTIQA 60
           MSSLLLNTSN KKVHGG+AFQNVSGLLLKTSMPFGLQSK FDFRSLKTKHCDVKPL IQA
Sbjct: 1   MSSLLLNTSNFKKVHGGVAFQNVSGLLLKTSMPFGLQSKSFDFRSLKTKHCDVKPLMIQA 60

Query: 61  RGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120
           RGNSKTESAKVRNRR+QKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS
Sbjct: 61  RGNSKTESAKVRNRRLQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120

Query: 121 MRPTPSCTTIEAAQHVGEELVKVCMDLNIHEISLYDRNGFACGEKMQAFEIAISRYGFLQ 180
           MRPT SCTTIEAAQHVGEELVKVC DLNIHEIS YDRNGFA GEKMQAFEIAISRYGFLQ
Sbjct: 121 MRPTLSCTTIEAAQHVGEELVKVCGDLNIHEISSYDRNGFARGEKMQAFEIAISRYGFLQ 180

[Close]

BLAST of CsGy5G023335 vs. NCBI nr
Match: XP_038891856.1 (50S ribosomal protein L18 isoform X2 [Benincasa hispida])

HSP 1 Score: 317 bits (811), Expect = 3.71e-108
Identity = 159/180 (88.33%), Postives = 166/180 (92.22%), Query Frame = 0


Query: 1   MSSLLLNTSNLKKVHGGMAFQNVSGLLLKTSMPFGLQSKPFDFRSLKTKHCDVKPLTIQA 60
           M SLLLNT NLKKV+GGMAF N  GLL KTS PFGLQSKPF+F SLKT++CDVKPLTIQA
Sbjct: 1   MPSLLLNTLNLKKVYGGMAFLNGPGLLSKTSTPFGLQSKPFNFPSLKTRNCDVKPLTIQA 60

Query: 61  RGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120
           RGNSKTESAK+ NRR+QKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS
Sbjct: 61  RGNSKTESAKITNRRLQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120

Query: 121 MRPTPSCTTIEAAQHVGEELVKVCMDLNIHEISLYDRNGFACGEKMQAFEIAISRYGFLQ 180
           MRP+PSCTTIEAAQHVGEELVK C DLNIHEIS YDRNGFA GEKMQAFEIAISRYG LQ
Sbjct: 121 MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIAISRYGLLQ 180

[Close]

BLAST of CsGy5G023335 vs. NCBI nr
Match: XP_038891854.1 (50S ribosomal protein L18 isoform X1 [Benincasa hispida] >XP_038891855.1 50S ribosomal protein L18 isoform X1 [Benincasa hispida])

HSP 1 Score: 317 bits (811), Expect = 1.83e-107
Identity = 159/180 (88.33%), Postives = 166/180 (92.22%), Query Frame = 0


Query: 1   MSSLLLNTSNLKKVHGGMAFQNVSGLLLKTSMPFGLQSKPFDFRSLKTKHCDVKPLTIQA 60
           M SLLLNT NLKKV+GGMAF N  GLL KTS PFGLQSKPF+F SLKT++CDVKPLTIQA
Sbjct: 47  MPSLLLNTLNLKKVYGGMAFLNGPGLLSKTSTPFGLQSKPFNFPSLKTRNCDVKPLTIQA 106

Query: 61  RGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120
           RGNSKTESAK+ NRR+QKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS
Sbjct: 107 RGNSKTESAKITNRRLQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 166

Query: 121 MRPTPSCTTIEAAQHVGEELVKVCMDLNIHEISLYDRNGFACGEKMQAFEIAISRYGFLQ 180
           MRP+PSCTTIEAAQHVGEELVK C DLNIHEIS YDRNGFA GEKMQAFEIAISRYG LQ
Sbjct: 167 MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIAISRYGLLQ 226

[Close]

BLAST of CsGy5G023335 vs. NCBI nr
Match: XP_022987454.1 (uncharacterized protein LOC111484997 [Cucurbita maxima])

HSP 1 Score: 303 bits (777), Expect = 5.64e-103
Identity = 153/180 (85.00%), Postives = 161/180 (89.44%), Query Frame = 0


Query: 1   MSSLLLNTSNLKKVHGGMAFQNVSGLLLKTSMPFGLQSKPFDFRSLKTKHCDVKPLTIQA 60
           M SL LNT N +KV+GGM F NV GLL KTS PF  QSKPF+F SLK +HCDVKPL IQA
Sbjct: 1   MPSLPLNTINFEKVNGGMHFLNVPGLLSKTSTPFWFQSKPFNFPSLKRRHCDVKPLMIQA 60

Query: 61  RGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120
           RGNSKTESAKVRNRR+QKKYNG+ T+PRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS
Sbjct: 61  RGNSKTESAKVRNRRLQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120

Query: 121 MRPTPSCTTIEAAQHVGEELVKVCMDLNIHEISLYDRNGFACGEKMQAFEIAISRYGFLQ 180
           MRP+PSCTTIEAAQHVGEELVK C DLNIHEIS YDRNGFA GEKMQAFEIAISRYGFLQ
Sbjct: 121 MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIAISRYGFLQ 180

[Close]

BLAST of CsGy5G023335 vs. ExPASy TrEMBL
Match: A0A0A0KQM5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G605190 PE=4 SV=1)

HSP 1 Score: 362 bits (930), Expect = 1.24e-126
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0


Query: 1   MSSLLLNTSNLKKVHGGMAFQNVSGLLLKTSMPFGLQSKPFDFRSLKTKHCDVKPLTIQA 60
           MSSLLLNTSNLKKVHGGMAFQNVSGLLLKTSMPFGLQSKPFDFRSLKTKHCDVKPLTIQA
Sbjct: 1   MSSLLLNTSNLKKVHGGMAFQNVSGLLLKTSMPFGLQSKPFDFRSLKTKHCDVKPLTIQA 60

Query: 61  RGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120
           RGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS
Sbjct: 61  RGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120

Query: 121 MRPTPSCTTIEAAQHVGEELVKVCMDLNIHEISLYDRNGFACGEKMQAFEIAISRYGFLQ 180
           MRPTPSCTTIEAAQHVGEELVKVCMDLNIHEISLYDRNGFACGEKMQAFEIAISRYGFLQ
Sbjct: 121 MRPTPSCTTIEAAQHVGEELVKVCMDLNIHEISLYDRNGFACGEKMQAFEIAISRYGFLQ 180

[Close]

BLAST of CsGy5G023335 vs. ExPASy TrEMBL
Match: A0A1S3BEE0 (50S ribosomal protein L18 OS=Cucumis melo OX=3656 GN=LOC103489126 PE=4 SV=1)

HSP 1 Score: 339 bits (869), Expect = 2.58e-117
Identity = 171/180 (95.00%), Postives = 173/180 (96.11%), Query Frame = 0


Query: 1   MSSLLLNTSNLKKVHGGMAFQNVSGLLLKTSMPFGLQSKPFDFRSLKTKHCDVKPLTIQA 60
           MSSLLLNTSN KKVHGG+AFQNVSGLLLKTSMPFGLQSK FDFRSLKTKHCDVKPL IQA
Sbjct: 1   MSSLLLNTSNFKKVHGGVAFQNVSGLLLKTSMPFGLQSKSFDFRSLKTKHCDVKPLMIQA 60

Query: 61  RGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120
           RGNSKTESAKVRNRR+QKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS
Sbjct: 61  RGNSKTESAKVRNRRLQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120

Query: 121 MRPTPSCTTIEAAQHVGEELVKVCMDLNIHEISLYDRNGFACGEKMQAFEIAISRYGFLQ 180
           MRPT SCTTIEAAQHVGEELVKVC DLNIHEIS YDRNGFA GEKMQAFEIAISRYGFLQ
Sbjct: 121 MRPTLSCTTIEAAQHVGEELVKVCGDLNIHEISSYDRNGFARGEKMQAFEIAISRYGFLQ 180

[Close]

BLAST of CsGy5G023335 vs. ExPASy TrEMBL
Match: A0A5D3D244 (50S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1932G00380 PE=4 SV=1)

HSP 1 Score: 339 bits (869), Expect = 2.58e-117
Identity = 171/180 (95.00%), Postives = 173/180 (96.11%), Query Frame = 0


Query: 1   MSSLLLNTSNLKKVHGGMAFQNVSGLLLKTSMPFGLQSKPFDFRSLKTKHCDVKPLTIQA 60
           MSSLLLNTSN KKVHGG+AFQNVSGLLLKTSMPFGLQSK FDFRSLKTKHCDVKPL IQA
Sbjct: 1   MSSLLLNTSNFKKVHGGVAFQNVSGLLLKTSMPFGLQSKSFDFRSLKTKHCDVKPLMIQA 60

Query: 61  RGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120
           RGNSKTESAKVRNRR+QKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS
Sbjct: 61  RGNSKTESAKVRNRRLQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120

Query: 121 MRPTPSCTTIEAAQHVGEELVKVCMDLNIHEISLYDRNGFACGEKMQAFEIAISRYGFLQ 180
           MRPT SCTTIEAAQHVGEELVKVC DLNIHEIS YDRNGFA GEKMQAFEIAISRYGFLQ
Sbjct: 121 MRPTLSCTTIEAAQHVGEELVKVCGDLNIHEISSYDRNGFARGEKMQAFEIAISRYGFLQ 180

[Close]

BLAST of CsGy5G023335 vs. ExPASy TrEMBL
Match: A0A6J1JIY0 (uncharacterized protein LOC111484997 OS=Cucurbita maxima OX=3661 GN=LOC111484997 PE=4 SV=1)

HSP 1 Score: 303 bits (777), Expect = 2.73e-103
Identity = 153/180 (85.00%), Postives = 161/180 (89.44%), Query Frame = 0


Query: 1   MSSLLLNTSNLKKVHGGMAFQNVSGLLLKTSMPFGLQSKPFDFRSLKTKHCDVKPLTIQA 60
           M SL LNT N +KV+GGM F NV GLL KTS PF  QSKPF+F SLK +HCDVKPL IQA
Sbjct: 1   MPSLPLNTINFEKVNGGMHFLNVPGLLSKTSTPFWFQSKPFNFPSLKRRHCDVKPLMIQA 60

Query: 61  RGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120
           RGNSKTESAKVRNRR+QKKYNG+ T+PRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS
Sbjct: 61  RGNSKTESAKVRNRRLQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120

Query: 121 MRPTPSCTTIEAAQHVGEELVKVCMDLNIHEISLYDRNGFACGEKMQAFEIAISRYGFLQ 180
           MRP+PSCTTIEAAQHVGEELVK C DLNIHEIS YDRNGFA GEKMQAFEIAISRYGFLQ
Sbjct: 121 MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIAISRYGFLQ 180

[Close]

BLAST of CsGy5G023335 vs. ExPASy TrEMBL
Match: A0A6J1GYP6 (uncharacterized protein LOC111458689 OS=Cucurbita moschata OX=3662 GN=LOC111458689 PE=4 SV=1)

HSP 1 Score: 298 bits (763), Expect = 3.71e-101
Identity = 151/180 (83.89%), Postives = 158/180 (87.78%), Query Frame = 0


Query: 1   MSSLLLNTSNLKKVHGGMAFQNVSGLLLKTSMPFGLQSKPFDFRSLKTKHCDVKPLTIQA 60
           M SL LNT N +KV+GGM F NV GLL KT  PF  QSKPF+F SLK +HCDVKPL IQA
Sbjct: 1   MPSLPLNTINFEKVNGGMHFLNVPGLLSKTPTPFWFQSKPFNFPSLKRRHCDVKPLMIQA 60

Query: 61  RGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120
           RGNSKTESAKVRNRR QKKYNG+ T+PRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS
Sbjct: 61  RGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKS 120

Query: 121 MRPTPSCTTIEAAQHVGEELVKVCMDLNIHEISLYDRNGFACGEKMQAFEIAISRYGFLQ 180
           MRP+PSCTTIEAAQHVGEELVK C DLNIHEIS YDRNGFA GEKMQAFEIAIS YGFLQ
Sbjct: 121 MRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIAISGYGFLQ 180

[Close]

BLAST of CsGy5G023335 vs. TAIR 10
Match: AT1G14205.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 188.3 bits (477), Expect = 5.2e-48
Identity = 98/162 (60.49%), Postives = 119/162 (73.46%), Query Frame = 0


Query: 19  AFQNVSGLLLKTSMPFGLQSKPF-DFRSLKTKHCDVKPLTIQARGNSKTESAKVRNRRMQ 78
           A  ++S +  + S   G + KP+  F    T    VKP  I+ARGN++ ES K RNRR +
Sbjct: 3   ALTSLSTVQFRVSDILGTRLKPYPQFPIRITTMSVVKPFVIEARGNTRVESPKTRNRRSR 62

Query: 79  KKYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPTPSCTTIEAAQHVG 138
           KK+ GT T+PRLSVFCSDKQLYAMLVDD NKKCLFY STLQKS+R  P CT IEAA+ VG
Sbjct: 63  KKFTGTQTKPRLSVFCSDKQLYAMLVDDFNKKCLFYASTLQKSIRGDPPCTVIEAAKRVG 122

Query: 139 EELVKVCMDLNIHEISLYDRNGFACGEKMQAFEIAISRYGFL 180
           EEL+K  +DL I+EIS YDRNG   GE+MQAFEIAI+++GFL
Sbjct: 123 EELIKASIDLKINEISSYDRNGNKRGERMQAFEIAIAQHGFL 164

[Close]

BLAST of CsGy5G023335 vs. TAIR 10
Match: AT1G48350.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 79.3 bits (194), Expect = 3.4e-15
Identity = 46/146 (31.51%), Postives = 76/146 (52.05%), Query Frame = 0


Query: 35  GLQSKPFDFRSLKTKHCDVKPLTIQARGNSKTESAKVRNRRMQKKYNGTPTRPRLSVFCS 94
           GLQ +    +   +     + + ++A+  + +E    R+ R++KK NGT  RPRL VF S
Sbjct: 23  GLQHRAVFLKPWSSSSLQSRSMVVEAKTKTSSEDRIARHSRIRKKVNGTTERPRLCVFRS 82

Query: 95  DKQLYAMLVDDQNKKCLFYGSTLQKSMRPT---PSCTTIEAAQHVGEELVKVCMDLNIHE 154
           +K LY  ++DD     L   ST QK +       S  TIE A+ VGE + K C++  I +
Sbjct: 83  NKHLYVQVIDDTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITK 142

Query: 155 ISLYDRNGFACGEKMQAFEIAISRYG 178
           ++ +DR G+    +++A   A   +G
Sbjct: 143 VA-FDRGGYPYHGRIEALAAAAREHG 167

The following BLAST results are available for this feature:

BLAST of CsGy5G023335 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82195	4.4e-15	34.04	50S ribosomal protein L18, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL18 P...	[more]
Q9SX68	4.8e-14	31.51	50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1...	[more]
A9FGF8	1.2e-12	37.38	50S ribosomal protein L18 OS=Sorangium cellulosum (strain So ce56) OX=448385 GN=...	[more]
P04453	4.5e-12	39.62	50S ribosomal protein L18 OS=Mycoplasma capricolum subsp. capricolum (strain Cal...	[more]
Q8SAY0	5.9e-12	37.61	50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica OX=3994...	[more]

BLAST of CsGy5G023335 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135173.1	2.57e-126	100.00	uncharacterized protein LOC101218434 [Cucumis sativus] >KGN51925.1 hypothetical ...	[more]
XP_008446359.1	5.33e-117	95.00	PREDICTED: 50S ribosomal protein L18 [Cucumis melo] >XP_008446360.1 PREDICTED: 5...	[more]
XP_038891856.1	3.71e-108	88.33	50S ribosomal protein L18 isoform X2 [Benincasa hispida]	[more]
XP_038891854.1	1.83e-107	88.33	50S ribosomal protein L18 isoform X1 [Benincasa hispida] >XP_038891855.1 50S rib...	[more]
XP_022987454.1	5.64e-103	85.00	uncharacterized protein LOC111484997 [Cucurbita maxima]	[more]

BLAST of CsGy5G023335 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQM5	1.24e-126	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G605190 PE=4 SV=1	[more]
A0A1S3BEE0	2.58e-117	95.00	50S ribosomal protein L18 OS=Cucumis melo OX=3656 GN=LOC103489126 PE=4 SV=1	[more]
A0A5D3D244	2.58e-117	95.00	50S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1JIY0	2.73e-103	85.00	uncharacterized protein LOC111484997 OS=Cucurbita maxima OX=3661 GN=LOC111484997...	[more]
A0A6J1GYP6	3.71e-101	83.89	uncharacterized protein LOC111458689 OS=Cucurbita moschata OX=3662 GN=LOC1114586...	[more]

BLAST of CsGy5G023335 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14205.1	5.2e-48	60.49	Ribosomal L18p/L5e family protein	[more]
AT1G48350.1	3.4e-15	31.51	Ribosomal L18p/L5e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 64..169 e-value: 2.0E-17 score: 63.6
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 28..179
None	No IPR available	GENE3D	3.30.420.100		coord: 64..178 e-value: 1.2E-21 score: 79.3
None	No IPR available	PANTHER	PTHR12899:SF8	RIBOSOMAL L18P/L5E FAMILY PROTEIN	coord: 28..179
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 77..178 e-value: 2.51108E-22 score: 84.1287
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 65..174

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G023335.1	CsGy5G023335.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome