CsGy5G021820 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy5G021820
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	cyclin-dependent protein kinase inhibitor SMR6-like
Location	Gy14Chr5: 27451760 .. 27452253 (-)
RNA-Seq Expression	CsGy5G021820
Synteny	CsGy5G021820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGTTCTCAGAAAACTTCCGTAAGGACATGGGGTTCGAATTTGACCCCGAAAAATGGGTCATTACTGGAATTCAATTACGACCTCCTCTATTGCTCACCATTAACAAAGAACACAGTCATTGCGACAATGAAGACCAACCGCCGACGCCTACTGGAGATGAATGCCGGATCCTATCGGGTTCCAAATGCCCACCCGCCCCTAAGAAGCCTAAATCTTCGTTGAAATTCAACCACGGCAACGTGCGCCAATTCTTCAAGCCTCCCGACTTAGAGGTTGTTTTTAGCCGACATGTCGAAAGGGCTAATTGAATAACAGCTCCATGGCTTCTTAACTTTAGCTATTACCCTTTCCAATCTTTGTTTTTTCTCTTTTTTTTGTTCGTTTCTTTTCTTAGTTGGTGCACTGTATAGAGATTGTAAAACGTAGCCAGTCAAAGCTGGTGGTTTCTGCCATTCAGATGGGCAGGAAGAACCAAAATTTTACCTTCTAA

mRNA sequence

ATGCCGTTCTCAGAAAACTTCCGTAAGGACATGGGGTTCGAATTTGACCCCGAAAAATGGGTCATTACTGGAATTCAATTACGACCTCCTCTATTGCTCACCATTAACAAAGAACACAGTCATTGCGACAATGAAGACCAACCGCCGACGCCTACTGGAGATGAATGCCGGATCCTATCGGGTTCCAAATGCCCACCCGCCCCTAAGAAGCCTAAATCTTCGTTGAAATTCAACCACGGCAACGTGCGCCAATTCTTCAAGCCTCCCGACTTAGAGTTGGTGCACTGTATAGAGATTGTAAAACGTAGCCAGTCAAAGCTGGTGGTTTCTGCCATTCAGATGGGCAGGAAGAACCAAAATTTTACCTTCTAA

Coding sequence (CDS)

ATGCCGTTCTCAGAAAACTTCCGTAAGGACATGGGGTTCGAATTTGACCCCGAAAAATGGGTCATTACTGGAATTCAATTACGACCTCCTCTATTGCTCACCATTAACAAAGAACACAGTCATTGCGACAATGAAGACCAACCGCCGACGCCTACTGGAGATGAATGCCGGATCCTATCGGGTTCCAAATGCCCACCCGCCCCTAAGAAGCCTAAATCTTCGTTGAAATTCAACCACGGCAACGTGCGCCAATTCTTCAAGCCTCCCGACTTAGAGTTGGTGCACTGTATAGAGATTGTAAAACGTAGCCAGTCAAAGCTGGTGGTTTCTGCCATTCAGATGGGCAGGAAGAACCAAAATTTTACCTTCTAA

Protein sequence

MPFSENFRKDMGFEFDPEKWVITGIQLRPPLLLTINKEHSHCDNEDQPPTPTGDECRILSGSKCPPAPKKPKSSLKFNHGNVRQFFKPPDLELVHCIEIVKRSQSKLVVSAIQMGRKNQNFTF*

Homology

[Close]

BLAST of CsGy5G021820 vs. ExPASy Swiss-Prot
Match: Q29Q81 (Cyclin-dependent protein kinase inhibitor SMR6 OS=Arabidopsis thaliana OX=3702 GN=SMR6 PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.8e-11
Identity = 41/107 (38.32%), Postives = 58/107 (54.21%), Query Frame = 0


Query: 1   MPFSENFRKDMGFEFDPEKWVITGIQLR------------PPLLLTINKEHSHCDNEDQP 60
           M FS+  + + G E D +KWVI GI +R            PP ++T  +E  + + E+  
Sbjct: 1   MGFSKKSQFEGGLESDGKKWVIAGISIRASLKPVKTKLRAPPEIVTEVEEDCYNEEEECS 60

Query: 61  PTPTGDECRILSGSKCPPAPKKPKSSLKFNHGNVRQFFKPP-DLELV 95
            TPT  E +I    +CPPAP+K + +LK     VR+FF PP DLE V
Sbjct: 61  TTPTAKETKIPELLECPPAPRKRRPALKCRSNVVREFFTPPSDLETV 107

[Close]

BLAST of CsGy5G021820 vs. ExPASy Swiss-Prot
Match: Q1G3Y4 (Cyclin-dependent protein kinase inhibitor SMR15 OS=Arabidopsis thaliana OX=3702 GN=SMR15 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.1e-09
Identity = 37/80 (46.25%), Postives = 48/80 (60.00%), Query Frame = 0


Query: 18  EKWVITGIQLR---PPLLLTINKEHSHCDNEDQPPTPTGDECRILSGSKCPPAPKKPKSS 77
           +K VITGI L     P+ L+ +   +  D +  P TPT D  RI +   CPPAPKK K +
Sbjct: 22  KKCVITGISLHSTVKPISLSSSAVSNTEDEDLCPTTPTADSVRIPTVIPCPPAPKKRKLT 81

Query: 78  LKFNHGNVRQFFKPPDLELV 95
           LK ++G  R+FF PPDLE V
Sbjct: 82  LKVSYG-PREFFSPPDLETV 100

[Close]

BLAST of CsGy5G021820 vs. NCBI nr
Match: KAE8648709.1 (hypothetical protein Csa_009216 [Cucumis sativus])

HSP 1 Score: 230 bits (586), Expect = 1.34e-75
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MPFSENFRKDMGFEFDPEKWVITGIQLRPPLLLTINKEHSHCDNEDQPPTPTGDECRILS 60
           MPFSENFRKDMGFEFDPEKWVITGIQLRPPLLLTINKEHSHCDNEDQPPTPTGDECRILS
Sbjct: 1   MPFSENFRKDMGFEFDPEKWVITGIQLRPPLLLTINKEHSHCDNEDQPPTPTGDECRILS 60

Query: 61  GSKCPPAPKKPKSSLKFNHGNVRQFFKPPDLELVHCIEIVKRSQSKL 107
           GSKCPPAPKKPKSSLKFNHGNVRQFFKPPDLELVHCIEIVKRSQSKL
Sbjct: 61  GSKCPPAPKKPKSSLKFNHGNVRQFFKPPDLELVHCIEIVKRSQSKL 107

[Close]

BLAST of CsGy5G021820 vs. NCBI nr
Match: KAA0034281.1 (hypothetical protein E6C27_scaffold65G002800 [Cucumis melo var. makuwa] >TYK15638.1 hypothetical protein E5676_scaffold35G001350 [Cucumis melo var. makuwa])

HSP 1 Score: 175 bits (444), Expect = 1.78e-54
Identity = 79/84 (94.05%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 11 MGFEFDPEKWVITGIQLRPPLLLTINKEHSHCDNEDQPPTPTGDECRILSGSKCPPAPKK 70
          MGFEFDPEKWVITGIQLRPPLLLTINKEH+HCDNEDQPPTPTGDECRI SGSKCPPAPKK
Sbjct: 1  MGFEFDPEKWVITGIQLRPPLLLTINKEHNHCDNEDQPPTPTGDECRIRSGSKCPPAPKK 60

Query: 71 PKSSLKFNHGNVRQFFKPPDLELV 94
          PKSSLKFNH N+RQFFKPPDLE+V
Sbjct: 61 PKSSLKFNHSNMRQFFKPPDLEVV 84

[Close]

BLAST of CsGy5G021820 vs. NCBI nr
Match: XP_022957284.1 (cyclin-dependent protein kinase inhibitor SMR6-like [Cucurbita moschata])

HSP 1 Score: 158 bits (400), Expect = 1.39e-47
Identity = 75/98 (76.53%), Postives = 82/98 (83.67%), Query Frame = 0


Query: 1  MPFSENFRKDMGFEFDPEKWVITGIQLRPPLLLT----INKEHSHCDNEDQPPTPTGDEC 60
          M FSENF+  MGF+FDP KWVITGIQ RPPL+      I+KE  HCD EDQPPTPTGD+C
Sbjct: 1  MGFSENFQDHMGFQFDPRKWVITGIQSRPPLVPIYTNLIHKELDHCDTEDQPPTPTGDDC 60

Query: 61 RILSGSKCPPAPKKPKSSLKFNHGNVRQFFKPPDLELV 94
          RI SGSKCPPAPKK KSS+KFNHGNVRQFFKPPDLE+V
Sbjct: 61 RIRSGSKCPPAPKKRKSSMKFNHGNVRQFFKPPDLEVV 98

[Close]

BLAST of CsGy5G021820 vs. NCBI nr
Match: KAG6601529.1 (Cyclin-dependent protein kinase inhibitor SMR8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 147 bits (371), Expect = 2.68e-43
Identity = 69/88 (78.41%), Postives = 75/88 (85.23%), Query Frame = 0


Query: 11 MGFEFDPEKWVITGIQLRPPLLLT----INKEHSHCDNEDQPPTPTGDECRILSGSKCPP 70
          MGF+FDP KWVITGIQ RPPL+      I+KE  HCD EDQPPTPTGD+CRI SGSKCPP
Sbjct: 1  MGFQFDPRKWVITGIQSRPPLVPIYTNPIHKELDHCDTEDQPPTPTGDDCRIRSGSKCPP 60

Query: 71 APKKPKSSLKFNHGNVRQFFKPPDLELV 94
          APKK KSS+KFNHGNVRQFFKPPDLE+V
Sbjct: 61 APKKRKSSMKFNHGNVRQFFKPPDLEVV 88

[Close]

BLAST of CsGy5G021820 vs. NCBI nr
Match: KAE9613356.1 (hypothetical protein Lalb_Chr05g0216591 [Lupinus albus] >KAF1873110.1 hypothetical protein Lal_00016241 [Lupinus albus])

HSP 1 Score: 84.7 bits (208), Expect = 2.17e-18
Identity = 46/87 (52.87%), Postives = 54/87 (62.07%), Query Frame = 0


Query: 16  DPEKWVITGIQLRPPL----LLTINKEHSHCDNEDQ--PPTPTGDECRILSGSKCPPAPK 75
           D  KWVI GI LR PL     + + KE   CD E++    TPTG+E R+ S   CPPAPK
Sbjct: 14  DNRKWVIHGISLRAPLKPIYTIPVEKEEGECDTEEECSTTTPTGEEARVPSTMTCPPAPK 73

Query: 76  KPKSSLKFNH--GNVRQFFKPPDLELV 94
           K K SLKFN+  G  R+FF PPDLE V
Sbjct: 74  KRKPSLKFNYLGGGAREFFTPPDLETV 100

[Close]

BLAST of CsGy5G021820 vs. ExPASy TrEMBL
Match: A0A0A0KVI5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G598740 PE=4 SV=1)

HSP 1 Score: 261 bits (667), Expect = 2.19e-88
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MPFSENFRKDMGFEFDPEKWVITGIQLRPPLLLTINKEHSHCDNEDQPPTPTGDECRILS 60
           MPFSENFRKDMGFEFDPEKWVITGIQLRPPLLLTINKEHSHCDNEDQPPTPTGDECRILS
Sbjct: 1   MPFSENFRKDMGFEFDPEKWVITGIQLRPPLLLTINKEHSHCDNEDQPPTPTGDECRILS 60

Query: 61  GSKCPPAPKKPKSSLKFNHGNVRQFFKPPDLELVHCIEIVKRSQSKLVVSAIQMGRKNQN 120
           GSKCPPAPKKPKSSLKFNHGNVRQFFKPPDLELVHCIEIVKRSQSKLVVSAIQMGRKNQN
Sbjct: 61  GSKCPPAPKKPKSSLKFNHGNVRQFFKPPDLELVHCIEIVKRSQSKLVVSAIQMGRKNQN 120

Query: 121 FTF 123
           FTF
Sbjct: 121 FTF 123

[Close]

BLAST of CsGy5G021820 vs. ExPASy TrEMBL
Match: A0A5A7SXV2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001350 PE=4 SV=1)

HSP 1 Score: 175 bits (444), Expect = 8.60e-55
Identity = 79/84 (94.05%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 11 MGFEFDPEKWVITGIQLRPPLLLTINKEHSHCDNEDQPPTPTGDECRILSGSKCPPAPKK 70
          MGFEFDPEKWVITGIQLRPPLLLTINKEH+HCDNEDQPPTPTGDECRI SGSKCPPAPKK
Sbjct: 1  MGFEFDPEKWVITGIQLRPPLLLTINKEHNHCDNEDQPPTPTGDECRIRSGSKCPPAPKK 60

Query: 71 PKSSLKFNHGNVRQFFKPPDLELV 94
          PKSSLKFNH N+RQFFKPPDLE+V
Sbjct: 61 PKSSLKFNHSNMRQFFKPPDLEVV 84

[Close]

BLAST of CsGy5G021820 vs. ExPASy TrEMBL
Match: A0A6J1H1H9 (cyclin-dependent protein kinase inhibitor SMR6-like OS=Cucurbita moschata OX=3662 GN=LOC111458725 PE=4 SV=1)

HSP 1 Score: 158 bits (400), Expect = 6.74e-48
Identity = 75/98 (76.53%), Postives = 82/98 (83.67%), Query Frame = 0


Query: 1  MPFSENFRKDMGFEFDPEKWVITGIQLRPPLLLT----INKEHSHCDNEDQPPTPTGDEC 60
          M FSENF+  MGF+FDP KWVITGIQ RPPL+      I+KE  HCD EDQPPTPTGD+C
Sbjct: 1  MGFSENFQDHMGFQFDPRKWVITGIQSRPPLVPIYTNLIHKELDHCDTEDQPPTPTGDDC 60

Query: 61 RILSGSKCPPAPKKPKSSLKFNHGNVRQFFKPPDLELV 94
          RI SGSKCPPAPKK KSS+KFNHGNVRQFFKPPDLE+V
Sbjct: 61 RIRSGSKCPPAPKKRKSSMKFNHGNVRQFFKPPDLEVV 98

[Close]

BLAST of CsGy5G021820 vs. ExPASy TrEMBL
Match: A0A2P2IWJ2 (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.40e-20
Identity = 47/95 (49.47%), Postives = 61/95 (64.21%), Query Frame = 0


Query: 1  MPFSENFRKDMGFEFDPEKWVITGIQLRPPLL-LTINKEHSHCDNEDQPPTPTGDECRIL 60
          M  SE  + D G EFD +KWVI GI LR PL  +  N      ++E+   TPTG+E RI 
Sbjct: 1  MGISEKPQVDGGLEFDGKKWVIAGISLRAPLKPIYTNPVEKDSESEECSTTPTGEEARIP 60

Query: 61 SGSKCPPAPKKPKSSLKFNHGNVRQFFKPPDLELV 94
          + S CPPAP+K K++LK N+  V++FF PPDLE V
Sbjct: 61 AISTCPPAPRKRKATLKCNYSGVKEFFTPPDLETV 95

[Close]

BLAST of CsGy5G021820 vs. ExPASy TrEMBL
Match: A0A6A5MPF7 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00016241 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.05e-18
Identity = 46/87 (52.87%), Postives = 54/87 (62.07%), Query Frame = 0


Query: 16  DPEKWVITGIQLRPPL----LLTINKEHSHCDNEDQ--PPTPTGDECRILSGSKCPPAPK 75
           D  KWVI GI LR PL     + + KE   CD E++    TPTG+E R+ S   CPPAPK
Sbjct: 14  DNRKWVIHGISLRAPLKPIYTIPVEKEEGECDTEEECSTTTPTGEEARVPSTMTCPPAPK 73

Query: 76  KPKSSLKFNH--GNVRQFFKPPDLELV 94
           K K SLKFN+  G  R+FF PPDLE V
Sbjct: 74  KRKPSLKFNYLGGGAREFFTPPDLETV 100

[Close]

BLAST of CsGy5G021820 vs. TAIR 10
Match: AT5G40460.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27630.1); Has 87 Blast hits to 87 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 68.6 bits (166), Expect = 4.2e-12
Identity = 41/107 (38.32%), Postives = 58/107 (54.21%), Query Frame = 0


Query: 1   MPFSENFRKDMGFEFDPEKWVITGIQLR------------PPLLLTINKEHSHCDNEDQP 60
           M FS+  + + G E D +KWVI GI +R            PP ++T  +E  + + E+  
Sbjct: 1   MGFSKKSQFEGGLESDGKKWVIAGISIRASLKPVKTKLRAPPEIVTEVEEDCYNEEEECS 60

Query: 61  PTPTGDECRILSGSKCPPAPKKPKSSLKFNHGNVRQFFKPP-DLELV 95
            TPT  E +I    +CPPAP+K + +LK     VR+FF PP DLE V
Sbjct: 61  TTPTAKETKIPELLECPPAPRKRRPALKCRSNVVREFFTPPSDLETV 107

[Close]

BLAST of CsGy5G021820 vs. TAIR 10
Match: AT1G60783.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10690.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 61.6 bits (148), Expect = 5.1e-10
Identity = 37/80 (46.25%), Postives = 48/80 (60.00%), Query Frame = 0


Query: 18  EKWVITGIQLR---PPLLLTINKEHSHCDNEDQPPTPTGDECRILSGSKCPPAPKKPKSS 77
           +K VITGI L     P+ L+ +   +  D +  P TPT D  RI +   CPPAPKK K +
Sbjct: 22  KKCVITGISLHSTVKPISLSSSAVSNTEDEDLCPTTPTADSVRIPTVIPCPPAPKKRKLT 81

Query: 78  LKFNHGNVRQFFKPPDLELV 95
           LK ++G  R+FF PPDLE V
Sbjct: 82  LKVSYG-PREFFSPPDLETV 100

The following BLAST results are available for this feature:

BLAST of CsGy5G021820 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q29Q81	5.8e-11	38.32	Cyclin-dependent protein kinase inhibitor SMR6 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q1G3Y4	7.1e-09	46.25	Cyclin-dependent protein kinase inhibitor SMR15 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of CsGy5G021820 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648709.1	1.34e-75	100.00	hypothetical protein Csa_009216 [Cucumis sativus]	[more]
KAA0034281.1	1.78e-54	94.05	hypothetical protein E6C27_scaffold65G002800 [Cucumis melo var. makuwa] >TYK1563...	[more]
XP_022957284.1	1.39e-47	76.53	cyclin-dependent protein kinase inhibitor SMR6-like [Cucurbita moschata]	[more]
KAG6601529.1	2.68e-43	78.41	Cyclin-dependent protein kinase inhibitor SMR8, partial [Cucurbita argyrosperma ...	[more]
KAE9613356.1	2.17e-18	52.87	hypothetical protein Lalb_Chr05g0216591 [Lupinus albus] >KAF1873110.1 hypothetic...	[more]

BLAST of CsGy5G021820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVI5	2.19e-88	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G598740 PE=4 SV=1	[more]
A0A5A7SXV2	8.60e-55	94.05	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1H1H9	6.74e-48	76.53	cyclin-dependent protein kinase inhibitor SMR6-like OS=Cucurbita moschata OX=366...	[more]
A0A2P2IWJ2	1.40e-20	49.47	Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]
A0A6A5MPF7	1.05e-18	52.87	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00016241 PE=4 SV=1	[more]

BLAST of CsGy5G021820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G40460.1	4.2e-12	38.32	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G60783.1	5.1e-10	46.25	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..60
None	No IPR available	PANTHER	PTHR33142:SF48	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR15	coord: 1..97
IPR040389	Cyclin-dependent protein kinase inhibitor SMR	PANTHER	PTHR33142	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 1..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G021820.2	CsGy5G021820.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032875	regulation of DNA endoreduplication