CsGy5G021310 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy5G021310
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	PHD finger protein ALFIN-LIKE 1-like
Location	Gy14Chr5: 27072858 .. 27073778 (-)
RNA-Seq Expression	CsGy5G021310
Synteny	CsGy5G021310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGTGAATTCTACGGCCTTTGTGATTCAGGTGATGCGGCTTTCTAAATTCTGGGCACTATCTTTCTACATCGTTTTTGCTTCGTGTCTTTTTTTTTTTTTTTTACTGTTTTTTGTTAAATGTCAAATTTATGGCTCGTTTGACAAGCTTTTGATGCGTATTGTTTCCTAATCACTTTTGATTACATAGTATTGGCAATTGATTCAGATTAAATGTTTGTTTCTTGAATTCGAAGTGTTCAATTTTTATAATTTCTGCAGCGTTTTTATCTAGATGGTTTTTTTTTTAATAAATGATATTTACTGTTAATTTCTGGCGAATTTAAACGAGATAACGAGTAGAGGTATTATATTCTAGTCTCTTTTAGTGACAAAGGATTGGGAGTTGCTTCAGATTTAATGTTTTTTCCTTGAATTCGAAGTATAACTTTTATGATGTTGCATCGAGATCCTGGAATTGTTTTCAAATACACTTACCGACTTACGTTTATTTTAATTAGACAGTAACTGGTGTGTACCAGGATCGGTTTTCTATTTCAATTCTTCTCTGAGAGTTGGGATTTACTATCGTTTTATGACGAAGCTTCTCATATATTTTAAACTTTGATTACTACTTTTTCAGGTGAGGAAATTTTTTGTCTGTATGGACATCCTAATGAAACATGGGAAATGGTTCTTCCAGTAGGCAGAGGTTCCACCGGAGCTTCTAGAGCCTGCACTTGGAATTAATTTTGCAACAGATGGCATGGACAGAAAATATTGGCGACCTCTTGTTGCTGTACATGGTGATTCCTGTTTGCTCTCTGTGGCTTTCTATTTTGGAGCAAGACTTGACCGAAGCAAAAGGTACAACTGTTCCACTTTTGAATTTTTGCTTGTGGGCTTTAAGTTAGGTTCTGTTAAATGCAATTCTTTTTAA

mRNA sequence

ATGTTTGTGAATTCTACGGCCTTTGTGATTCAGGCAGAGGTTCCACCGGAGCTTCTAGAGCCTGCACTTGGAATTAATTTTGCAACAGATGGCATGGACAGAAAATATTGGCGACCTCTTGTTGCTGTACATGGTGATTCCTGTTTGCTCTCTGTGGCTTTCTATTTTGGAGCAAGACTTGACCGAAGCAAAAGGTACAACTGTTCCACTTTTGAATTTTTGCTTGTGGGCTTTAAGTTAGGTTCTGTTAAATGCAATTCTTTTTAA

Coding sequence (CDS)

ATGTTTGTGAATTCTACGGCCTTTGTGATTCAGGCAGAGGTTCCACCGGAGCTTCTAGAGCCTGCACTTGGAATTAATTTTGCAACAGATGGCATGGACAGAAAATATTGGCGACCTCTTGTTGCTGTACATGGTGATTCCTGTTTGCTCTCTGTGGCTTTCTATTTTGGAGCAAGACTTGACCGAAGCAAAAGGTACAACTGTTCCACTTTTGAATTTTTGCTTGTGGGCTTTAAGTTAGGTTCTGTTAAATGCAATTCTTTTTAA

Protein sequence

MFVNSTAFVIQAEVPPELLEPALGINFATDGMDRKYWRPLVAVHGDSCLLSVAFYFGARLDRSKRYNCSTFEFLLVGFKLGSVKCNSF*

Homology

[Close]

BLAST of CsGy5G021310 vs. ExPASy Swiss-Prot
Match: Q9SRM4 (PHD finger protein ALFIN-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=AL2 PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.3e-16
Identity = 40/53 (75.47%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 13  EVPPELLEPALGINFATDGMDRKYWRPLVAVHGDSCLLSVAFYFGARLDRSKR 66
           EVPPEL EPALGINFA DGM RK W  LVAVH D  LLSV+FYFGARL+R++R
Sbjct: 67  EVPPELPEPALGINFARDGMQRKDWLSLVAVHSDCWLLSVSFYFGARLNRNER 119

[Close]

BLAST of CsGy5G021310 vs. ExPASy Swiss-Prot
Match: B8B8I3 (PHD finger protein ALFIN-LIKE 2 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_25444 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.8e-15
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 13  EVPPELLEPALGINFATDGMDRKYWRPLVAVHGDSCLLSVAFYFGARLDRSKR 66
           EVPPEL EPALGINFA DGM R+ W  LVAVH DS LLSVAF+FGARL+ ++R
Sbjct: 68  EVPPELPEPALGINFARDGMHRRDWLSLVAVHSDSWLLSVAFFFGARLNGNER 120

[Close]

BLAST of CsGy5G021310 vs. ExPASy Swiss-Prot
Match: Q8H383 (PHD finger protein ALFIN-LIKE 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0233300 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.8e-15
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 13  EVPPELLEPALGINFATDGMDRKYWRPLVAVHGDSCLLSVAFYFGARLDRSKR 66
           EVPPEL EPALGINFA DGM R+ W  LVAVH DS LLSVAF+FGARL+ ++R
Sbjct: 68  EVPPELPEPALGINFARDGMHRRDWLSLVAVHSDSWLLSVAFFFGARLNGNER 120

[Close]

BLAST of CsGy5G021310 vs. ExPASy Swiss-Prot
Match: Q9FFF5 (PHD finger protein ALFIN-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=AL1 PE=1 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.7e-15
Identity = 39/53 (73.58%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 13  EVPPELLEPALGINFATDGMDRKYWRPLVAVHGDSCLLSVAFYFGARLDRSKR 66
           EVPPEL EPALGINFA DGM RK W  LVAVH D  LLSV+ YFGARL+R++R
Sbjct: 65  EVPPELPEPALGINFARDGMQRKDWLSLVAVHSDCWLLSVSSYFGARLNRNER 117

[Close]

BLAST of CsGy5G021310 vs. ExPASy Swiss-Prot
Match: Q8S8M9 (PHD finger protein ALFIN-LIKE 6 OS=Arabidopsis thaliana OX=3702 GN=AL6 PE=1 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 8.2e-15
Identity = 40/62 (64.52%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 13  EVPPELLEPALGINFATDGMDRKYWRPLVAVHGDSCLLSVAFYFGARLDRSKRYNCSTFE 72
           EVPPEL EPALGINFA DGM  K W  LVAVH DS LLSVAFYFGAR    K      F+
Sbjct: 66  EVPPELPEPALGINFARDGMQEKDWVSLVAVHSDSWLLSVAFYFGARFGFGKNERKRLFQ 125

Query: 73  FL 75
            +
Sbjct: 126 MI 127

[Close]

BLAST of CsGy5G021310 vs. NCBI nr
Match: KAE8651982.1 (hypothetical protein Csa_016936 [Cucumis sativus])

HSP 1 Score: 126 bits (316), Expect = 2.82e-35
Identity = 62/74 (83.78%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 15  PPELLEPALGINFATDGMDRKYWRPLVAVHGDSCLLSVAFYFGARLDRSKRYNCSTFEFL 74
           P E  E  L +    DGMDRKYWRPLVAVHGDSCLLSVAFYFGARLDRSKRYNCSTFEFL
Sbjct: 45  PNETWEMVLPVG--RDGMDRKYWRPLVAVHGDSCLLSVAFYFGARLDRSKRYNCSTFEFL 104

Query: 75  LVGFKLGSVKCNSF 88
           LV FKLGSVKCNSF
Sbjct: 105 LVSFKLGSVKCNSF 116

[Close]

BLAST of CsGy5G021310 vs. NCBI nr
Match: XP_020081407.1 (PHD finger protein ALFIN-LIKE 2-like [Ananas comosus])

HSP 1 Score: 89.0 bits (219), Expect = 3.22e-20
Identity = 43/54 (79.63%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 13  EVPPELLEPALGINFATDGMDRKYWRPLVAVHGDSCLLSVAFYFGARLDRSKRY 66
           EVPPEL EPALGINFA DGM+RK W  LVAVH DS LLSVAFYFGARL+R++RY
Sbjct: 67  EVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYFGARLNRNERY 120

[Close]

BLAST of CsGy5G021310 vs. NCBI nr
Match: KAF7133473.1 (hypothetical protein RHSIM_Rhsim09G0177500 [Rhododendron simsii])

HSP 1 Score: 92.0 bits (227), Expect = 3.90e-20
Identity = 44/56 (78.57%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 13  EVPPELLEPALGINFATDGMDRKYWRPLVAVHGDSCLLSVAFYFGARLDRSKRYNC 68
           EVPPEL EPALGINFA DGM R+ W  LVAVH DS LLSVAFYFGARL+R++RYNC
Sbjct: 67  EVPPELPEPALGINFARDGMKRRDWLSLVAVHTDSWLLSVAFYFGARLNRNERYNC 122

[Close]

BLAST of CsGy5G021310 vs. NCBI nr
Match: MBA0598408.1 (hypothetical protein [Gossypium raimondii] >MBA0694816.1 hypothetical protein [Gossypium aridum])

HSP 1 Score: 87.0 bits (214), Expect = 4.10e-20
Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 13 EVPPELLEPALGINFATDGMDRKYWRPLVAVHGDSCLLSVAFYFGARLDRSKRY 66
          EVPPEL EPALGINFA DGM+RK W  LVAVH D  LLSVAFYFGARL+R++RY
Sbjct: 22 EVPPELPEPALGINFARDGMNRKDWLSLVAVHSDCWLLSVAFYFGARLNRNERY 75

[Close]

BLAST of CsGy5G021310 vs. NCBI nr
Match: EXB88396.1 (hypothetical protein L484_007679 [Morus notabilis])

HSP 1 Score: 88.2 bits (217), Expect = 4.60e-20
Identity = 47/75 (62.67%), Postives = 52/75 (69.33%), Query Frame = 0


Query: 13  EVPPELLEPALGINFATDGMDRKYWRPLVAVHGDSCLLSVAFYFGARLDRSKRYNCSTFE 72
           EVPPEL EPALGINFA DGM RK W  LVAVH DS LLSVAFYFGARL+R++RY      
Sbjct: 66  EVPPELPEPALGINFARDGMKRKDWLSLVAVHTDSWLLSVAFYFGARLNRNERY------ 125

Query: 73  FLLVGFKLGSVKCNS 87
                    S++CNS
Sbjct: 126 ---------SIRCNS 125

[Close]

BLAST of CsGy5G021310 vs. ExPASy TrEMBL
Match: A0A0A0KPZ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G592790 PE=4 SV=1)

HSP 1 Score: 126 bits (316), Expect = 1.36e-35
Identity = 62/74 (83.78%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 15  PPELLEPALGINFATDGMDRKYWRPLVAVHGDSCLLSVAFYFGARLDRSKRYNCSTFEFL 74
           P E  E  L +    DGMDRKYWRPLVAVHGDSCLLSVAFYFGARLDRSKRYNCSTFEFL
Sbjct: 45  PNETWEMVLPVG--RDGMDRKYWRPLVAVHGDSCLLSVAFYFGARLDRSKRYNCSTFEFL 104

Query: 75  LVGFKLGSVKCNSF 88
           LV FKLGSVKCNSF
Sbjct: 105 LVSFKLGSVKCNSF 116

[Close]

BLAST of CsGy5G021310 vs. ExPASy TrEMBL
Match: A0A6P5EDS8 (PHD finger protein ALFIN-LIKE 2-like OS=Ananas comosus OX=4615 GN=LOC109705055 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.56e-20
Identity = 43/54 (79.63%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 13  EVPPELLEPALGINFATDGMDRKYWRPLVAVHGDSCLLSVAFYFGARLDRSKRY 66
           EVPPEL EPALGINFA DGM+RK W  LVAVH DS LLSVAFYFGARL+R++RY
Sbjct: 67  EVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYFGARLNRNERY 120

[Close]

BLAST of CsGy5G021310 vs. ExPASy TrEMBL
Match: A0A7J8QAD2 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=Gorai_008172 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.98e-20
Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 13 EVPPELLEPALGINFATDGMDRKYWRPLVAVHGDSCLLSVAFYFGARLDRSKRY 66
          EVPPEL EPALGINFA DGM+RK W  LVAVH D  LLSVAFYFGARL+R++RY
Sbjct: 22 EVPPELPEPALGINFARDGMNRKDWLSLVAVHSDCWLLSVAFYFGARLNRNERY 75

[Close]

BLAST of CsGy5G021310 vs. ExPASy TrEMBL
Match: A0A7J8Y5G1 (Uncharacterized protein OS=Gossypium aridum OX=34290 GN=Goari_005087 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.98e-20
Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 13 EVPPELLEPALGINFATDGMDRKYWRPLVAVHGDSCLLSVAFYFGARLDRSKRY 66
          EVPPEL EPALGINFA DGM+RK W  LVAVH D  LLSVAFYFGARL+R++RY
Sbjct: 22 EVPPELPEPALGINFARDGMNRKDWLSLVAVHSDCWLLSVAFYFGARLNRNERY 75

[Close]

BLAST of CsGy5G021310 vs. ExPASy TrEMBL
Match: W9RFJ8 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_007679 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.23e-20
Identity = 47/75 (62.67%), Postives = 52/75 (69.33%), Query Frame = 0


Query: 13  EVPPELLEPALGINFATDGMDRKYWRPLVAVHGDSCLLSVAFYFGARLDRSKRYNCSTFE 72
           EVPPEL EPALGINFA DGM RK W  LVAVH DS LLSVAFYFGARL+R++RY      
Sbjct: 66  EVPPELPEPALGINFARDGMKRKDWLSLVAVHTDSWLLSVAFYFGARLNRNERY------ 125

Query: 73  FLLVGFKLGSVKCNS 87
                    S++CNS
Sbjct: 126 ---------SIRCNS 125

[Close]

BLAST of CsGy5G021310 vs. TAIR 10
Match: AT3G11200.1 (alfin-like 2 )

HSP 1 Score: 85.1 bits (209), Expect = 3.1e-17
Identity = 40/53 (75.47%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 13  EVPPELLEPALGINFATDGMDRKYWRPLVAVHGDSCLLSVAFYFGARLDRSKR 66
           EVPPEL EPALGINFA DGM RK W  LVAVH D  LLSV+FYFGARL+R++R
Sbjct: 67  EVPPELPEPALGINFARDGMQRKDWLSLVAVHSDCWLLSVSFYFGARLNRNER 119

[Close]

BLAST of CsGy5G021310 vs. TAIR 10
Match: AT3G11200.2 (alfin-like 2 )

HSP 1 Score: 85.1 bits (209), Expect = 3.1e-17
Identity = 40/53 (75.47%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 13  EVPPELLEPALGINFATDGMDRKYWRPLVAVHGDSCLLSVAFYFGARLDRSKR 66
           EVPPEL EPALGINFA DGM RK W  LVAVH D  LLSV+FYFGARL+R++R
Sbjct: 54  EVPPELPEPALGINFARDGMQRKDWLSLVAVHSDCWLLSVSFYFGARLNRNER 106

[Close]

BLAST of CsGy5G021310 vs. TAIR 10
Match: AT5G05610.1 (alfin-like 1 )

HSP 1 Score: 82.0 bits (201), Expect = 2.6e-16
Identity = 39/53 (73.58%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 13  EVPPELLEPALGINFATDGMDRKYWRPLVAVHGDSCLLSVAFYFGARLDRSKR 66
           EVPPEL EPALGINFA DGM RK W  LVAVH D  LLSV+ YFGARL+R++R
Sbjct: 65  EVPPELPEPALGINFARDGMQRKDWLSLVAVHSDCWLLSVSSYFGARLNRNER 117

[Close]

BLAST of CsGy5G021310 vs. TAIR 10
Match: AT5G05610.2 (alfin-like 1 )

HSP 1 Score: 82.0 bits (201), Expect = 2.6e-16
Identity = 39/53 (73.58%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 13  EVPPELLEPALGINFATDGMDRKYWRPLVAVHGDSCLLSVAFYFGARLDRSKR 66
           EVPPEL EPALGINFA DGM RK W  LVAVH D  LLSV+ YFGARL+R++R
Sbjct: 65  EVPPELPEPALGINFARDGMQRKDWLSLVAVHSDCWLLSVSSYFGARLNRNER 117

[Close]

BLAST of CsGy5G021310 vs. TAIR 10
Match: AT2G02470.1 (alfin-like 6 )

HSP 1 Score: 80.9 bits (198), Expect = 5.8e-16
Identity = 40/62 (64.52%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 13  EVPPELLEPALGINFATDGMDRKYWRPLVAVHGDSCLLSVAFYFGARLDRSKRYNCSTFE 72
           EVPPEL EPALGINFA DGM  K W  LVAVH DS LLSVAFYFGAR    K      F+
Sbjct: 66  EVPPELPEPALGINFARDGMQEKDWVSLVAVHSDSWLLSVAFYFGARFGFGKNERKRLFQ 125

Query: 73  FL 75
            +
Sbjct: 126 MI 127

The following BLAST results are available for this feature:

BLAST of CsGy5G021310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SRM4	4.3e-16	75.47	PHD finger protein ALFIN-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=AL2 PE=1 SV=1	[more]
B8B8I3	2.8e-15	73.58	PHD finger protein ALFIN-LIKE 2 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_25...	[more]
Q8H383	2.8e-15	73.58	PHD finger protein ALFIN-LIKE 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07...	[more]
Q9FFF5	3.7e-15	73.58	PHD finger protein ALFIN-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=AL1 PE=1 SV=1	[more]
Q8S8M9	8.2e-15	64.52	PHD finger protein ALFIN-LIKE 6 OS=Arabidopsis thaliana OX=3702 GN=AL6 PE=1 SV=1	[more]

BLAST of CsGy5G021310 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651982.1	2.82e-35	83.78	hypothetical protein Csa_016936 [Cucumis sativus]	[more]
XP_020081407.1	3.22e-20	79.63	PHD finger protein ALFIN-LIKE 2-like [Ananas comosus]	[more]
KAF7133473.1	3.90e-20	78.57	hypothetical protein RHSIM_Rhsim09G0177500 [Rhododendron simsii]	[more]
MBA0598408.1	4.10e-20	77.78	hypothetical protein [Gossypium raimondii] >MBA0694816.1 hypothetical protein [G...	[more]
EXB88396.1	4.60e-20	62.67	hypothetical protein L484_007679 [Morus notabilis]	[more]

BLAST of CsGy5G021310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPZ8	1.36e-35	83.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G592790 PE=4 SV=1	[more]
A0A6P5EDS8	1.56e-20	79.63	PHD finger protein ALFIN-LIKE 2-like OS=Ananas comosus OX=4615 GN=LOC109705055 P...	[more]
A0A7J8QAD2	1.98e-20	77.78	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=Gorai_008172 PE=4 SV=...	[more]
A0A7J8Y5G1	1.98e-20	77.78	Uncharacterized protein OS=Gossypium aridum OX=34290 GN=Goari_005087 PE=4 SV=1	[more]
W9RFJ8	2.23e-20	62.67	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_007679 PE=4 SV=1	[more]

BLAST of CsGy5G021310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G11200.1	3.1e-17	75.47	alfin-like 2	[more]
AT3G11200.2	3.1e-17	75.47	alfin-like 2	[more]
AT5G05610.1	2.6e-16	73.58	alfin-like 1	[more]
AT5G05610.2	2.6e-16	73.58	alfin-like 1	[more]
AT2G02470.1	5.8e-16	64.52	alfin-like 6	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021998	Alfin, N-terminal	PFAM	PF12165	Alfin	coord: 11..66 e-value: 1.5E-20 score: 73.2
IPR045104	Alfin	PANTHER	PTHR12321	CPG BINDING PROTEIN	coord: 12..69
None	No IPR available	PANTHER	PTHR12321:SF98	PHD FINGER PROTEIN ALFIN-LIKE 5	coord: 12..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G021310.2	CsGy5G021310.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006325	chromatin organization
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0042393	histone binding
molecular_function	GO:0046872	metal ion binding